Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0329 Punica granatum HOM05D000529 ORTHO05D010311 1.4e-120 436.4 239 100.0
PGR102G1711 Punica granatum HOM05D000529 ORTHO05D000472 3.1e-67 259.2 150 88.7
Dinv39897 Davidia involucrata HOM05D000529 ORTHO05D000472 1.1e-19 101.3 122 41.8
Psat4g088680 Pisum sativum HOM05D000529 ORTHO05D000472 2.9e-17 93.2 122 35.2
Medtr8g479430 Medicago truncatula HOM05D000529 ORTHO05D000472 6.5e-17 92.0 134 35.1
Ciclev10024907m.g Citrus clementina HOM05D000529 ORTHO05D000472 3.2e-16 89.7 141 32.6
Medtr8g479450 Medicago truncatula HOM05D000529 ORTHO05D000472 4.2e-16 89.4 118 34.7
Ciclev10018897m.g Citrus clementina HOM05D000529 ORTHO05D000472 1.6e-15 87.4 146 33.6
Dinv29949 Davidia involucrata HOM05D000529 ORTHO05D000472 1.6e-15 87.4 148 35.1
CSS0017568 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 3.5e-15 86.3 144 36.1
CiPaw.01G025000 Carya illinoinensis HOM05D000529 ORTHO05D000472 3.5e-15 86.3 120 38.3
Potri.007G039300 Populus trichocarpa HOM05D000529 ORTHO05D000472 3.5e-15 86.3 118 33.9
CiPaw.01G024500 Carya illinoinensis HOM05D000529 ORTHO05D000472 4.6e-15 85.9 120 38.3
Cfa021022 Carpinus fangiana HOM05D000529 ORTHO05D010311 2.3e-14 83.6 140 35.0
GSVIVG01003572001 Vitis vinifera HOM05D000529 ORTHO05D000472 2.3e-14 83.6 134 38.1
Haze_15451 Corylus avellana HOM05D000529 ORTHO05D000472 5.1e-14 82.4 130 33.1
Dinv29950 Davidia involucrata HOM05D000529 ORTHO05D000472 6.7e-14 82.0 152 32.2
Glyma.17G180300 Glycine max HOM05D000529 ORTHO05D000472 1.1e-13 81.3 136 35.3
Manes.12G094100 Manihot esculenta HOM05D000529 ORTHO05D000472 1.1e-13 81.3 135 32.6
RhsimUnG0071100 Rhododendron simsii HOM05D000529 ORTHO05D000472 1.9e-13 80.5 140 33.6
Haze_15450 Corylus avellana HOM05D000529 ORTHO05D000472 5.7e-13 79.0 128 35.2
Cfa003970 Carpinus fangiana HOM05D000529 ORTHO05D000472 9.7e-13 78.2 128 35.2
TWI09G1247 Tripterygium wilfordii HOM05D000529 ORTHO05D000472 1.3e-12 77.8 122 34.4
CiPaw.01G024000 Carya illinoinensis HOM05D000529 ORTHO05D000472 2.2e-12 77.0 121 33.9
GSVIVG01003571001 Vitis vinifera HOM05D000529 ORTHO05D000472 2.8e-12 76.6 155 30.3
Sed0023813 Sechium edule HOM05D000456 ORTHO05D373143 4.8e-12 75.9 127 34.6
GSVIVG01003569001 Vitis vinifera HOM05D000529 ORTHO05D019823 1.1e-11 74.7 155 31.0
Sabra07G0035100 Salix brachista HOM05D000529 ORTHO05D000472 1.4e-11 74.3 129 30.2
GSVIVG01007144001 Vitis vinifera HOM05D000529 ORTHO05D000472 1.8e-11 73.9 155 30.3
Lj4g0017861 Lotus japonicus HOM05D000529 ORTHO05D000472 2.4e-11 73.6 137 28.5
Rhsim08G0104500 Rhododendron simsii HOM05D000529 ORTHO05D000472 4.1e-11 72.8 132 34.8
CsaV3_6G043030 Cucumis sativus L. HOM05D000529 ORTHO05D000472 9.0e-11 71.6 151 33.1
ClCG01G016630 Citrullus lanatus HOM05D000529 ORTHO05D000472 1.2e-10 71.2 139 33.8
Gorai.007G210000 Gossypium raimondii HOM05D000529 ORTHO05D000472 2.0e-10 70.5 121 33.9
arahy.Tifrunner.gnm1.ann1.50YJF0 Arachis hypogaea HOM05D000033 ORTHO05D085538 3.4e-10 69.7 156 32.1
arahy.Tifrunner.gnm1.ann1.AANK3P Arachis hypogaea HOM05D000033 ORTHO05D083727 3.4e-10 69.7 134 33.6
MELO3C007539.2 Cucumis melo HOM05D000529 ORTHO05D000472 3.4e-10 69.7 151 32.5
Rhsim08G0104400 Rhododendron simsii HOM05D000529 ORTHO05D000472 5.9e-10 68.9 132 31.1
Nn5g29352 Nelumbo nucifera HOM05D000529 ORTHO05D000472 1.0e-09 68.2 138 28.3
MD02G1164700 Malus domestica HOM05D000529 ORTHO05D000472 1.3e-09 67.8 96 38.5
Phvul.003G247601 Phaseolus vulgaris HOM05D000529 ORTHO05D000472 1.3e-09 67.8 134 31.3
Sabra07G0035300 Salix brachista HOM05D000529 ORTHO05D000472 1.3e-09 67.8 129 27.9
Oeu001181.2 Olea europaea HOM05D000529 ORTHO05D000472 1.7e-09 67.4 116 33.6
Duzib264G0157 Durio zibethinus HOM05D000529 ORTHO05D000472 2.9e-09 66.6 132 31.1
Ca_24796_v3 Cicer arietinum L. HOM05D000529 ORTHO05D000472 3.8e-09 66.2 142 31.7
Cc07_g05700 Coffea canephora HOM05D000529 ORTHO05D000472 5.0e-09 65.9 122 31.1
Dinv19756 Davidia involucrata HOM05D003049 ORTHO05D003531 6.5e-09 65.5 94 36.2
Sabra07G0031700 Salix brachista HOM05D000529 ORTHO05D000472 6.5e-09 65.5 120 35.8
TPR.G11364 Trifolium pratense HOM05D000529 ORTHO05D000472 6.5e-09 65.5 142 27.5
Dinv42680 Davidia involucrata HOM05D000529 ORTHO05D010311 8.5e-09 65.1 94 35.1
QL06p042829 Quercus lobata HOM05D000529 ORTHO05D000472 8.5e-09 65.1 118 32.2
QL01p034905 Quercus lobata HOM05D000529 ORTHO05D000472 1.1e-08 64.7 120 29.2
Sabra07G0035000 Salix brachista HOM05D000529 ORTHO05D000472 1.1e-08 64.7 124 33.9
TAR381G0813 Trochodendron aralioides HOM05D000529 ORTHO05D000472 1.1e-08 64.7 137 32.1
CSS0019496 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 1.4e-08 64.3 132 29.5
CSS0009849 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 1.9e-08 63.9 132 29.5
MD15G1276900 Malus domestica HOM05D000529 ORTHO05D000472 2.5e-08 63.5 118 34.7
Manes.13G128600 Manihot esculenta HOM05D000529 ORTHO05D000472 2.5e-08 63.5 124 31.5
Cpa.g.sc6.402 Carica papaya HOM05D000529 ORTHO05D000472 3.2e-08 63.2 132 28.8
Duzib264G0020 Durio zibethinus HOM05D000529 ORTHO05D000472 3.2e-08 63.2 121 31.4
Rhsim08G0202200 Rhododendron simsii HOM05D001266 ORTHO05D010311 3.2e-08 63.2 113 31.9
TPR.G30328 Trifolium pratense HOM05D000529 ORTHO05D000472 3.2e-08 63.2 138 25.4
arahy.Tifrunner.gnm1.ann1.4KB2JU Arachis hypogaea HOM05D000529 ORTHO05D000472 4.2e-08 62.8 124 30.6
arahy.Tifrunner.gnm1.ann1.XFEU61 Arachis hypogaea HOM05D000139 ORTHO05D000103 4.2e-08 62.8 121 32.2
QL01p034705 Quercus lobata HOM05D000529 ORTHO05D000472 4.2e-08 62.8 121 27.3
arahy.Tifrunner.gnm1.ann1.3N9TDM Arachis hypogaea HOM05D000033 ORTHO05D019823 5.5e-08 62.4 132 31.8
arahy.Tifrunner.gnm1.ann1.RP061L Arachis hypogaea HOM05D000033 ORTHO05D038917 5.5e-08 62.4 132 31.8
arahy.Tifrunner.gnm1.ann1.W15MA1 Arachis hypogaea HOM05D000139 ORTHO05D000103 5.5e-08 62.4 132 30.3
HanXRQChr04g0095241 Helianthus annuus HOM05D000529 ORTHO05D000472 5.5e-08 62.4 129 32.6
Haze_15456 Corylus avellana HOM05D008738 ORTHO05D010755 7.2e-08 62.0 131 31.3
MD02G1165300 Malus domestica HOM05D000529 ORTHO05D000472 7.2e-08 62.0 132 31.8
Ca_24798_v3 Cicer arietinum L. HOM05D000909 ORTHO05D000928 9.4e-08 61.6 142 30.3
Glyma.01G183400 Glycine max HOM05D000529 ORTHO05D000472 9.4e-08 61.6 135 26.7
MD02G1164800 Malus domestica HOM05D000529 ORTHO05D000472 9.4e-08 61.6 132 31.8
Medtr5g018060 Medicago truncatula HOM05D000529 ORTHO05D000472 9.4e-08 61.6 132 30.3
Prupe.5G127600 Prunus persica HOM05D000529 ORTHO05D010311 9.4e-08 61.6 129 28.7
Duzib147G1638 Durio zibethinus HOM05D000529 ORTHO05D000472 1.2e-07 61.2 121 29.8
Lalb_Chr05g0226741 Lupinus albus HOM05D000529 ORTHO05D010311 1.2e-07 61.2 140 30.0
QL06p043260 Quercus lobata HOM05D000529 ORTHO05D000472 1.2e-07 61.2 120 28.3
QL06p043215 Quercus lobata HOM05D000529 ORTHO05D000472 2.7e-07 60.1 112 33.0
GSVIVG01003565001 Vitis vinifera HOM05D000529 ORTHO05D000472 2.7e-07 60.1 130 30.0
FAN04G0459 Fragaria x ananassa HOM05D000529 ORTHO05D010311 3.6e-07 59.7 144 27.1
CAN.G836.52 Capsicum annuum HOM05D000529 ORTHO05D000472 4.6e-07 59.3 138 29.0
Cfa003965 Carpinus fangiana HOM05D008738 ORTHO05D010755 4.6e-07 59.3 128 30.5
DCAR_021433 Daucus carota HOM05D000529 ORTHO05D000472 4.6e-07 59.3 132 25.0
MD02G1164300 Malus domestica HOM05D000529 ORTHO05D000472 4.6e-07 59.3 120 30.8
Potri.009G091700 Populus trichocarpa HOM05D000529 ORTHO05D038917 4.6e-07 59.3 93 33.3
QL03p072768 Quercus lobata HOM05D000529 ORTHO05D000472 4.6e-07 59.3 119 29.4
QL03p072647 Quercus lobata HOM05D000529 ORTHO05D000472 6.1e-07 58.9 104 29.8
CAN.G836.51 Capsicum annuum HOM05D000529 ORTHO05D000472 7.9e-07 58.5 130 30.8
MD06G1115400 Malus domestica HOM05D000529 ORTHO05D025806 7.9e-07 58.5 143 28.0
Prupe.5G127900 Prunus persica HOM05D000529 ORTHO05D012517 7.9e-07 58.5 131 29.0
PGR102G1567 Punica granatum HOM05D000529 ORTHO05D000472 1.0e-06 58.2 98 36.7
CANSAT01G0169 Cannabis sativa HOM05D000529 ORTHO05D000472 1.4e-06 57.8 127 32.3
DCAR_010928 Daucus carota HOM05D000529 ORTHO05D000472 1.4e-06 57.8 107 28.0
Prupe.7G140400 Prunus persica HOM05D000529 ORTHO05D020679 1.4e-06 57.8 132 27.3
QL06p042852 Quercus lobata HOM05D000529 ORTHO05D000472 1.4e-06 57.8 120 28.3
FAN08G3343 Fragaria x ananassa HOM05D000529 ORTHO05D010311 1.8e-06 57.4 119 28.6
QL02p078112 Quercus lobata HOM05D000529 ORTHO05D000472 1.8e-06 57.4 126 31.0
QL93p0205_0245 Quercus lobata HOM05D000529 ORTHO05D000472 1.8e-06 57.4 126 31.0
CiPaw.01G103200 Carya illinoinensis HOM05D000529 ORTHO05D000472 2.3e-06 57.0 128 29.7
FAN28G0855 Fragaria x ananassa HOM05D000529 ORTHO05D000472 2.3e-06 57.0 137 29.9
Lj2g0013161 Lotus japonicus HOM05D000529 ORTHO05D000472 2.3e-06 57.0 139 26.6
CSS0009502 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 3.0e-06 56.6 132 29.5
FAN18G1889 Fragaria x ananassa HOM05D000529 ORTHO05D010311 3.0e-06 56.6 144 27.8
Peaxi162Scf00993g00326 Petunia axillaris HOM05D000529 ORTHO05D000472 3.0e-06 56.6 130 29.2
Sed0020887 Sechium edule HOM05D000529 ORTHO05D000472 3.0e-06 56.6 123 28.5
Solyc02g090380.4 Solanum lycopersicum HOM05D000529 ORTHO05D000472 3.0e-06 56.6 131 29.8
Sopen02g035080 Solanum pennellii HOM05D000529 ORTHO05D000472 3.0e-06 56.6 132 29.5
GSVIVG01007146001 Vitis vinifera HOM05D000529 ORTHO05D000472 3.0e-06 56.6 130 29.2
Glyma.11G058900 Glycine max HOM05D000529 ORTHO05D000472 3.9e-06 56.2 124 27.4
FvH4_5g32820 Fragaria vesca HOM05D000529 ORTHO05D010311 5.1e-06 55.8 119 29.4
MD02G1165800 Malus domestica HOM05D000529 ORTHO05D010311 5.1e-06 55.8 106 34.0
Psat2g164720 Pisum sativum HOM05D000529 ORTHO05D000472 5.1e-06 55.8 110 29.1
QL01p034712 Quercus lobata HOM05D000529 ORTHO05D000472 5.1e-06 55.8 120 27.5
QL04p095514 Quercus lobata HOM05D000083 ORTHO05D002708 5.1e-06 55.8 139 33.1
QL06p043050 Quercus lobata HOM05D000529 ORTHO05D000472 5.1e-06 55.8 121 28.9
ECA238G2361 Erigeron canadensis HOM05D000529 ORTHO05D000472 6.7e-06 55.5 125 28.0
GSVIVG01003555001 Vitis vinifera HOM05D000529 ORTHO05D000472 6.7e-06 55.5 129 29.5
QL01p035125 Quercus lobata HOM05D000529 ORTHO05D000472 8.8e-06 55.1 110 30.0
QL03p070309 Quercus lobata HOM05D000529 ORTHO05D000472 8.8e-06 55.1 110 30.0


User provided reference genes

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