Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0277 Punica granatum HOM05D002903 ORTHO05D003066 2.2e-124 449.1 253 100.0
Eucgr.J01339 Eucalyptus grandis HOM05D002903 ORTHO05D003066 3.5e-37 159.5 265 46.0
Dinv24393 Davidia involucrata HOM05D002903 ORTHO05D003066 1.2e-26 124.4 217 41.0
FAN19G0913 Fragaria x ananassa HOM05D002903 ORTHO05D003066 1.4e-25 120.9 251 39.0
Eucgr.J01342 Eucalyptus grandis HOM05D002903 ORTHO05D003066 4.0e-25 119.4 268 42.9
FvH4_1g24530 Fragaria vesca HOM05D002903 ORTHO05D003066 2.0e-24 117.1 251 38.2
Gorai.012G036500 Gossypium raimondii HOM05D002903 ORTHO05D003066 2.6e-24 116.7 255 38.0
FAN28G2835 Fragaria x ananassa HOM05D002903 ORTHO05D003066 7.5e-24 115.2 251 37.8
Gohir.D04G032100 Gossypium hirsutum HOM05D002903 ORTHO05D003066 9.9e-24 114.8 255 37.6
FAN26G0773 Fragaria x ananassa HOM05D002903 ORTHO05D003066 2.2e-23 113.6 251 37.8
Gohir.A05G383200 Gossypium hirsutum HOM05D002903 ORTHO05D003066 3.7e-23 112.8 255 38.4
Dinv19537 Davidia involucrata HOM05D002903 ORTHO05D003066 1.1e-22 111.3 167 44.3
Duzib187G0480 Durio zibethinus HOM05D002903 ORTHO05D003066 3.2e-22 109.8 212 43.4
FAN23G0840 Fragaria x ananassa HOM05D002903 ORTHO05D003066 5.4e-22 109.0 251 37.1
Prupe.4G272900 Prunus persica HOM05D002903 ORTHO05D003066 9.2e-22 108.2 214 38.8
RcHm_v2.0_Chr2g0121941 Rosa chinensis HOM05D002903 ORTHO05D003066 1.2e-21 107.8 215 38.6
Thecc.01G134700 Theobroma cacao HOM05D002903 ORTHO05D003066 1.2e-21 107.8 234 38.5
QL10p043057 Quercus lobata HOM05D002903 ORTHO05D003066 4.6e-21 105.9 213 41.8
Actinidia12224 Actinidia chinensis HOM05D002903 ORTHO05D003066 3.0e-20 103.2 217 45.6
Actinidia20071 Actinidia chinensis HOM05D002903 ORTHO05D003066 3.9e-20 102.8 222 41.0
Rhsim08G0001600 Rhododendron simsii HOM05D002903 ORTHO05D003066 3.9e-20 102.8 191 38.7
TWI79G0835 Tripterygium wilfordii HOM05D000001 ORTHO05D010162 5.1e-20 102.4 223 43.0
Haze_25272 Corylus avellana HOM05D002903 ORTHO05D003066 6.6e-20 102.1 260 34.6
Potri.005G064700 Populus trichocarpa HOM05D002903 ORTHO05D003066 1.1e-19 101.3 215 41.9
Haze_25271 Corylus avellana HOM05D002903 ORTHO05D003066 2.5e-19 100.1 260 34.2
Haze_25273 Corylus avellana HOM05D002903 ORTHO05D003066 2.5e-19 100.1 260 34.2
Oeu058296.1 Olea europaea HOM05D002903 ORTHO05D003066 2.5e-19 100.1 166 43.4
GSVIVG01022345001 Vitis vinifera HOM05D002903 ORTHO05D003066 3.3e-19 99.8 201 35.3
CiPaw.04G081400 Carya illinoinensis HOM05D002903 ORTHO05D003066 4.3e-19 99.4 261 31.8
CiPaw.03G119900 Carya illinoinensis HOM05D002903 ORTHO05D003066 2.1e-18 97.1 214 39.7
Sabra05G0053700 Salix brachista HOM05D002903 ORTHO05D003066 2.1e-18 97.1 166 39.8
Actinidia06611 Actinidia chinensis HOM05D002903 ORTHO05D003066 8.1e-18 95.1 197 40.1
Potri.007G104500 Populus trichocarpa HOM05D002903 ORTHO05D003066 1.4e-17 94.4 202 36.6
COL.COLO4_35772 Corchorus olitorius HOM05D002903 ORTHO05D003066 3.1e-17 93.2 211 35.5
Hma1.2p1_0539F.1_g174540 Hydrangea macrophylla HOM05D002903 ORTHO05D003066 4.0e-17 92.8 151 41.1
Cfa002912 Carpinus fangiana HOM05D002903 ORTHO05D003066 6.8e-17 92.0 217 35.0
Nn5g28499 Nelumbo nucifera HOM05D002903 ORTHO05D003066 1.5e-16 90.9 229 32.8
Sabra07G0085500 Salix brachista HOM05D002903 ORTHO05D003066 1.5e-16 90.9 199 37.2
Nn1g06302 Nelumbo nucifera HOM05D002903 ORTHO05D003066 2.6e-16 90.1 173 41.0
DCAR_001203 Daucus carota HOM05D002903 ORTHO05D003066 2.2e-15 87.0 188 39.4
Nitab4.5_0000496g0210 Nicotiana tabacum HOM05D002903 ORTHO05D003066 4.9e-15 85.9 159 37.7
TAR625G1102 Trochodendron aralioides HOM05D002903 ORTHO05D003066 8.4e-15 85.1 161 41.0
Manes.12G157200 Manihot esculenta HOM05D002903 ORTHO05D003066 1.1e-14 84.7 229 36.2
TWI75G0819 Tripterygium wilfordii HOM05D002903 ORTHO05D003066 4.1e-14 82.8 110 44.5
Lj7P356T43 Lonicera japonica HOM05D002903 ORTHO05D003066 1.2e-13 81.3 159 34.6
Aqoxy5G02305 Aquilegia oxysepala HOM05D002903 ORTHO05D003066 1.6e-13 80.9 195 34.4
Atru.chr4.939 Acer truncatum HOM05D002903 ORTHO05D003066 2.1e-13 80.5 224 33.0
Cpa.g.sc26.66 Carica papaya HOM05D002903 ORTHO05D003066 2.7e-13 80.1 167 38.9
Peaxi162Scf00353g00026 Petunia axillaris HOM05D002903 ORTHO05D003066 3.5e-13 79.7 153 37.3
Ciclev10003587m.g Citrus clementina HOM05D002903 ORTHO05D003066 4.6e-13 79.3 165 40.0
Eucgr.F02770 Eucalyptus grandis HOM05D002903 ORTHO05D003066 4.6e-13 79.3 170 34.1
Oeu004513.1 Olea europaea HOM05D002903 ORTHO05D003066 6.0e-13 79.0 241 30.3
QL09p029695 Quercus lobata HOM05D002903 ORTHO05D003066 6.0e-13 79.0 205 34.6
VMungo0647G0886 Vigna mungo HOM05D002903 ORTHO05D003066 1.7e-12 77.4 203 40.9
Glyma.13G036100 Glycine max HOM05D002903 ORTHO05D003066 2.3e-12 77.0 227 35.2
Phvul.001G065100 Phaseolus vulgaris HOM05D002903 ORTHO05D003066 2.3e-12 77.0 203 39.9
Sopen05g034770 Solanum pennellii HOM05D002903 ORTHO05D003066 2.3e-12 77.0 145 37.9
Lalb_Chr10g0101441 Lupinus albus HOM05D002903 ORTHO05D003066 3.0e-12 76.6 190 35.8
Lj1g0027406 Lotus japonicus HOM05D002903 ORTHO05D003066 3.9e-12 76.3 233 37.3
Gohir.D02G076000 Gossypium hirsutum HOM05D002903 ORTHO05D003066 5.1e-12 75.9 173 34.1
Gorai.005G085300 Gossypium raimondii HOM05D002903 ORTHO05D003066 5.1e-12 75.9 173 34.1
Duzib093G1863 Durio zibethinus HOM05D002903 ORTHO05D003066 6.6e-12 75.5 183 33.3
Sed0027661 Sechium edule HOM05D002903 ORTHO05D003066 6.6e-12 75.5 204 39.2
DCAR_014329 Daucus carota HOM05D002903 ORTHO05D003066 1.1e-11 74.7 202 29.7
Migut.H00687 Erythranthe guttata HOM05D002903 ORTHO05D003066 1.1e-11 74.7 166 36.7
Solyc05g056380.3 Solanum lycopersicum HOM05D002903 ORTHO05D003066 1.1e-11 74.7 161 34.2
MSTRG.1394 Avicennia marina HOM05D002903 ORTHO05D003066 1.5e-11 74.3 157 37.6
Duzib041G0628 Durio zibethinus HOM05D002903 ORTHO05D003066 1.9e-11 73.9 178 33.1
Dinv25773 Davidia involucrata HOM05D002903 ORTHO05D003066 3.3e-11 73.2 164 31.1
Thecc.08G137400 Theobroma cacao HOM05D002903 ORTHO05D003066 3.3e-11 73.2 175 34.3
MBI03_g20844_MAGBIO Magnolia biondii HOM05D002903 ORTHO05D003066 4.3e-11 72.8 156 39.1
Thecc.06G085500 Theobroma cacao HOM05D002903 ORTHO05D003066 4.3e-11 72.8 113 48.7
ClCG08G006250 Citrullus lanatus HOM05D002903 ORTHO05D003066 5.6e-11 72.4 187 33.7
Psat6g040160 Pisum sativum HOM05D002903 ORTHO05D003066 5.6e-11 72.4 206 30.1
Thecc.06G085300 Theobroma cacao HOM05D002903 ORTHO05D003066 5.6e-11 72.4 113 47.8
Thecc.06G085900 Theobroma cacao HOM05D002903 ORTHO05D003066 5.6e-11 72.4 113 47.8
CiPaw.16G019600 Carya illinoinensis HOM05D002903 ORTHO05D003066 7.3e-11 72.0 201 34.8
Manes.02G172300 Manihot esculenta HOM05D002903 ORTHO05D003066 7.3e-11 72.0 198 33.3
Medtr1g029550 Medicago truncatula HOM05D002903 ORTHO05D003066 7.3e-11 72.0 248 29.0
Sed0005775 Sechium edule HOM05D002903 ORTHO05D003066 7.3e-11 72.0 181 38.7
CiPaw.15G024600 Carya illinoinensis HOM05D002903 ORTHO05D003066 1.2e-10 71.2 189 34.9
Migut.N03253 Erythranthe guttata HOM05D002903 ORTHO05D003066 1.2e-10 71.2 139 38.8
Cpa.g.sc42.173 Carica papaya HOM05D002903 ORTHO05D003066 1.6e-10 70.9 201 38.8
CsaV3_6G031200 Cucumis sativus L. HOM05D002903 ORTHO05D003066 1.6e-10 70.9 193 33.2
Gorai.013G109100 Gossypium raimondii HOM05D002903 ORTHO05D003066 2.1e-10 70.5 213 29.6
Gohir.A02G112000 Gossypium hirsutum HOM05D002903 ORTHO05D003066 2.8e-10 70.1 213 29.6
MELO3C008433.2 Cucumis melo HOM05D002903 ORTHO05D003066 3.6e-10 69.7 192 32.3
Glyma.14G158800 Glycine max HOM05D002903 ORTHO05D003066 3.6e-10 69.7 157 35.0
Manes.18G084700 Manihot esculenta HOM05D002903 ORTHO05D003066 4.7e-10 69.3 140 38.6
FvH4_2g15290 Fragaria vesca HOM05D002903 ORTHO05D003066 6.2e-10 68.9 162 35.8
FAN24G3523 Fragaria x ananassa HOM05D002903 ORTHO05D003066 6.2e-10 68.9 162 35.8
FAN27G1654 Fragaria x ananassa HOM05D002903 ORTHO05D003066 6.2e-10 68.9 164 36.0
Solyc06g059860.3 Solanum lycopersicum HOM05D002903 ORTHO05D003066 6.2e-10 68.9 183 35.5
Sopen06g019940 Solanum pennellii HOM05D002903 ORTHO05D003066 1.1e-09 68.2 195 30.3
Haze_17666 Corylus avellana HOM05D002903 ORTHO05D003066 1.4e-09 67.8 192 33.9
Gohir.D03G062500 Gossypium hirsutum HOM05D002903 ORTHO05D003066 1.4e-09 67.8 176 30.7
Lj1g0005014 Lotus japonicus HOM05D002903 ORTHO05D003066 1.4e-09 67.8 166 36.1
Sc26g0002820 Simmondsia chinensis HOM05D002903 ORTHO05D003066 1.4e-09 67.8 140 37.9
Actinidia03429 Actinidia chinensis HOM05D002903 ORTHO05D003066 1.8e-09 67.4 198 31.8
BcaB07g32128 Brassica carinata HOM05D002903 ORTHO05D003066 1.8e-09 67.4 205 31.2
Gohir.D05G241400 Gossypium hirsutum HOM05D002903 ORTHO05D003066 1.8e-09 67.4 169 31.4
PGSC0003DMG400023449 Solanum tuberosum HOM05D002903 ORTHO05D003066 1.8e-09 67.4 125 39.2
arahy.Tifrunner.gnm1.ann1.TSX9B2 Arachis hypogaea HOM05D002903 ORTHO05D003066 2.4e-09 67.0 195 35.9
Gorai.009G250800 Gossypium raimondii HOM05D002903 ORTHO05D003066 2.4e-09 67.0 169 31.4
Oeu047153.1 Olea europaea HOM05D002903 ORTHO05D003066 2.4e-09 67.0 170 33.5
EL10Ac1g01404 Beta vulgaris HOM05D002903 ORTHO05D003066 3.1e-09 66.6 175 40.0
FAN20G1459 Fragaria x ananassa HOM05D002903 ORTHO05D003066 3.1e-09 66.6 162 34.6
RcHm_v2.0_Chr6g0278041 Rosa chinensis HOM05D002903 ORTHO05D003066 4.0e-09 66.2 163 36.2
TAR376G0422 Trochodendron aralioides HOM05D002903 ORTHO05D003066 4.0e-09 66.2 152 36.8
MSTRG.25346 Avicennia marina HOM05D002903 ORTHO05D003066 5.2e-09 65.9 159 36.5
Cfa018400 Carpinus fangiana HOM05D002903 ORTHO05D003066 5.2e-09 65.9 183 35.0
Cc10_g13350 Coffea canephora HOM05D002903 ORTHO05D003066 5.2e-09 65.9 166 33.1
Gohir.A02G069300 Gossypium hirsutum HOM05D002903 ORTHO05D003066 5.2e-09 65.9 173 31.8
Psat5g061200 Pisum sativum HOM05D009467 ORTHO05D010918 5.2e-09 65.9 148 35.8
TPR.G30561 Trifolium pratense HOM05D002903 ORTHO05D003066 5.2e-09 65.9 146 32.2
Lj1g0005492 Lotus japonicus HOM05D002903 ORTHO05D003066 6.9e-09 65.5 159 37.1
MD05G1009200 Malus domestica HOM05D002903 ORTHO05D003066 6.9e-09 65.5 269 29.4
PGSC0003DMG400013037 Solanum tuberosum HOM05D002903 ORTHO05D003066 6.9e-09 65.5 156 35.9
Peaxi162Scf00505g00053 Petunia axillaris HOM05D002903 ORTHO05D003066 9.0e-09 65.1 172 35.5
Lalb_Chr08g0240931 Lupinus albus HOM05D002903 ORTHO05D003066 1.2e-08 64.7 157 34.4
PGR044G0841 Punica granatum HOM05D002903 ORTHO05D003066 1.2e-08 64.7 171 32.7
BcaC05g26046 Brassica carinata HOM05D002903 ORTHO05D003066 1.5e-08 64.3 209 32.1
C05p20270 Brassica napus HOM05D000744 ORTHO05D000332 1.5e-08 64.3 213 31.0
BolC5t30721H Brassica oleracea HOM05D002903 ORTHO05D003066 1.5e-08 64.3 211 31.8
Carub.0001s2080 Capsella rubella HOM05D002903 ORTHO05D003066 1.5e-08 64.3 209 30.1
CDE08G0104 Ceratophyllum demersum HOM05D002903 ORTHO05D003066 1.5e-08 64.3 186 34.4
Nitab4.5_0006582g0050 Nicotiana tabacum HOM05D002903 ORTHO05D003066 1.5e-08 64.3 154 35.7
SGA_v2.0_scaffold20G09019 Striga asiatica HOM05D002903 ORTHO05D003066 1.5e-08 64.3 190 31.6
VMungo1309G2413 Vigna mungo HOM05D002903 ORTHO05D003066 1.5e-08 64.3 170 34.7
THA.LOC104813698 Tarenaya hassleriana HOM05D002903 ORTHO05D003066 2.0e-08 63.9 149 36.9
Gohir.A05G240200 Gossypium hirsutum HOM05D002903 ORTHO05D003066 2.6e-08 63.5 168 30.4
MBI06_g27454_MAGBIO Magnolia biondii HOM05D002903 ORTHO05D003066 3.4e-08 63.2 229 33.6
Nitab4.5_0002270g0020 Nicotiana tabacum HOM05D002903 ORTHO05D003066 3.4e-08 63.2 218 33.9
arahy.Tifrunner.gnm1.ann1.I47HGM Arachis hypogaea HOM05D002903 ORTHO05D003066 4.4e-08 62.8 43 69.8
Atru.chr13.1637 Acer truncatum HOM05D002903 ORTHO05D003066 5.8e-08 62.4 160 33.1
Hund26764 Selenicereus undatus HOM05D002903 ORTHO05D003066 5.8e-08 62.4 151 43.7
Nitab4.5_0005642g0020 Nicotiana tabacum HOM05D002903 ORTHO05D003066 7.6e-08 62.0 178 29.8
AL1G34490 Arabidopsis lyrata HOM05D002903 ORTHO05D003066 9.9e-08 61.6 201 34.3
arahy.Tifrunner.gnm1.ann1.4FGN3C Arachis hypogaea HOM05D002903 ORTHO05D003066 9.9e-08 61.6 177 37.3
CSS0044801 Camellia sinensis var. sinensis HOM05D002903 ORTHO05D003066 9.9e-08 61.6 136 35.3
BraA06t24841Z Brassica rapa HOM05D002903 ORTHO05D003066 1.3e-07 61.2 206 31.6
SalBow6G1573 Salvia bowleyana HOM05D002903 ORTHO05D003066 1.3e-07 61.2 55 61.8
Dinv41151 Davidia involucrata HOM05D002903 ORTHO05D003066 2.2e-07 60.5 161 31.1
FAN15G2216 Fragaria x ananassa HOM05D002903 ORTHO05D003066 2.2e-07 60.5 159 34.0
CARHR021780 Cardamine hirsuta HOM05D002903 ORTHO05D003066 2.9e-07 60.1 200 29.5
Ca_16630_v3 Cicer arietinum L. HOM05D002903 ORTHO05D003066 2.9e-07 60.1 214 27.6
Nitab4.5_0008281g0010 Nicotiana tabacum HOM05D002903 ORTHO05D003066 2.9e-07 60.1 167 32.9
Potri.002G075400 Populus trichocarpa HOM05D002903 ORTHO05D003066 2.9e-07 60.1 183 32.8
A06p17430 Brassica napus HOM05D000744 ORTHO05D000332 4.9e-07 59.3 178 32.6
CAN.G1156.31 Capsicum annuum HOM05D013549 ORTHO05D003066 4.9e-07 59.3 136 33.1
COL.COLO4_38160 Corchorus olitorius HOM05D002903 ORTHO05D003066 4.9e-07 59.3 171 32.2
Oeu045975.1 Olea europaea HOM05D002903 ORTHO05D003066 4.9e-07 59.3 172 31.4
AUR62007679 Chenopodium quinoa HOM05D002903 ORTHO05D003066 6.4e-07 58.9 168 39.3
Glyma.04G243500 Glycine max HOM05D002903 ORTHO05D003066 6.4e-07 58.9 184 29.9
Hma1.2p1_1125F.1_g259580 Hydrangea macrophylla HOM05D002903 ORTHO05D003066 6.4e-07 58.9 156 34.0
MD10G1007900 Malus domestica HOM05D002903 ORTHO05D003066 6.4e-07 58.9 191 30.9
SalBow7G1710 Salvia bowleyana HOM05D002903 ORTHO05D003066 6.4e-07 58.9 155 36.1
Sp1g18940 Schrenkiella parvula HOM05D002903 ORTHO05D003066 6.4e-07 58.9 217 29.0
Aqoxy1G01928 Aquilegia oxysepala HOM05D002903 ORTHO05D003066 8.4e-07 58.5 46 63.0
Medtr3g096450 Medicago truncatula HOM05D002903 ORTHO05D003066 8.4e-07 58.5 236 31.4
Sabra05G0141500 Salix brachista HOM05D002903 ORTHO05D003066 8.4e-07 58.5 170 30.6
THA.LOC104812056 Tarenaya hassleriana HOM05D002903 ORTHO05D003066 8.4e-07 58.5 127 36.2
Thhalv10008635m.g Eutrema salsugineum HOM05D002903 ORTHO05D003066 1.1e-06 58.2 212 33.0
TWI60G0469 Tripterygium wilfordii HOM05D002903 ORTHO05D003066 1.1e-06 58.2 167 34.7
Thhalv10019082m.g Eutrema salsugineum HOM05D002903 ORTHO05D003066 1.9e-06 57.4 171 30.4
PGR042G1875 Punica granatum HOM05D002903 ORTHO05D003066 1.9e-06 57.4 118 37.3
arahy.Tifrunner.gnm1.ann1.Y173KB Arachis hypogaea HOM05D002903 ORTHO05D003066 2.4e-06 57.0 67 52.2
MSTRG.24179 Avicennia marina HOM05D002903 ORTHO05D003066 2.4e-06 57.0 203 30.0
CDE06G2796 Ceratophyllum demersum HOM05D002903 ORTHO05D003066 2.4e-06 57.0 221 29.4
Glyma.06G119800 Glycine max HOM05D002903 ORTHO05D003066 2.4e-06 57.0 184 31.0
Glyma.06G154700 Glycine max HOM05D002903 ORTHO05D003066 3.2e-06 56.6 214 31.3
vmacro00875 Vaccinium macrocarpon HOM05D002903 ORTHO05D003066 3.2e-06 56.6 207 34.8
HanXRQChr10g0309091 Helianthus annuus HOM05D002903 ORTHO05D003066 4.2e-06 56.2 169 30.8
Potri.005G185200 Populus trichocarpa HOM05D002903 ORTHO05D003066 4.2e-06 56.2 170 30.6
Sabra02G0058900 Salix brachista HOM05D002903 ORTHO05D003066 4.2e-06 56.2 179 30.7
Sopen08g029160 Solanum pennellii HOM05D002903 ORTHO05D003066 4.2e-06 56.2 193 32.6
BcaC05g26048 Brassica carinata HOM05D002903 ORTHO05D003066 5.4e-06 55.8 75 48.0
Hund17367 Selenicereus undatus HOM05D002903 ORTHO05D003066 5.4e-06 55.8 172 39.5
Lsat_1_v5_gn_1_9061 Lactuca sativa HOM05D002903 ORTHO05D003066 9.3e-06 55.1 179 31.8
VMungo1309G1474 Vigna mungo HOM05D002903 ORTHO05D003066 9.3e-06 55.1 135 33.3


User provided reference genes

Program Settings