Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0252 Punica granatum HOM05D006346 ORTHO05D007910 0.0e+00 1399.0 711 100.0
Atru.chr7.350 Acer truncatum HOM05D006346 ORTHO05D007910 2.8e-294 1015.0 710 73.5
Ciclev10007623m.g Citrus clementina HOM05D006346 ORTHO05D007910 2.6e-292 1008.4 716 73.3
Prupe.7G265700 Prunus persica HOM05D006346 ORTHO05D007910 3.0e-288 995.0 714 72.3
Potri.018G103700 Populus trichocarpa HOM05D006346 ORTHO05D007910 1.2e-287 993.0 681 73.4
Dinv42829 Davidia involucrata HOM05D006346 ORTHO05D007910 7.5e-287 990.3 671 74.7
Dinv43271 Davidia involucrata HOM05D006346 ORTHO05D007910 7.5e-287 990.3 671 74.7
QL02p093888 Quercus lobata HOM05D006346 ORTHO05D007910 1.1e-285 986.5 719 71.5
Cfa020798 Carpinus fangiana HOM05D006346 ORTHO05D007910 1.4e-285 986.1 717 72.0
Thecc.09G152100 Theobroma cacao HOM05D006346 ORTHO05D007910 9.1e-285 983.4 677 73.7
Lj9A719T56 Lonicera japonica HOM05D006346 ORTHO05D007910 1.2e-284 983.0 678 74.0
CiPaw.15G165500 Carya illinoinensis HOM05D006346 ORTHO05D007910 2.0e-284 982.2 716 71.4
Lalb_Chr08g0234231 Lupinus albus HOM05D006346 ORTHO05D007910 1.0e-283 979.9 728 69.6
Lj6g0013256 Lotus japonicus HOM05D006346 ORTHO05D007910 1.9e-282 975.7 681 72.7
COL.COLO4_23953 Corchorus olitorius HOM05D006346 ORTHO05D007910 2.1e-281 972.2 708 70.5
Hma1.2p1_0028F.1_g017690 Hydrangea macrophylla HOM05D006346 ORTHO05D007910 2.7e-281 971.8 679 72.0
CSS0042716 Camellia sinensis var. sinensis HOM05D006346 ORTHO05D007910 3.6e-281 971.5 679 72.9
CANSAT11G2498 Cannabis sativa HOM05D006346 ORTHO05D007910 3.6e-281 971.5 715 69.9
Gohir.A04G059826 Gossypium hirsutum HOM05D006346 ORTHO05D007910 3.6e-281 971.5 708 70.3
FAN28G1995 Fragaria x ananassa HOM05D006346 ORTHO05D007910 4.7e-281 971.1 711 70.9
FvH4_1g00650 Fragaria vesca HOM05D006346 ORTHO05D007910 8.0e-281 970.3 711 70.9
Gorai.012G099000 Gossypium raimondii HOM05D006346 ORTHO05D007910 1.0e-280 969.9 708 70.5
RcHm_v2.0_Chr2g0085271 Rosa chinensis HOM05D006346 ORTHO05D007910 1.4e-280 969.5 673 72.8
Sabra18G0089100 Salix brachista HOM05D006346 ORTHO05D007910 1.2e-279 966.5 720 69.3
Gohir.D04G088700 Gossypium hirsutum HOM05D006346 ORTHO05D007910 1.5e-279 966.1 708 70.3
FAN26G0534 Fragaria x ananassa HOM05D006346 ORTHO05D007910 7.5e-279 963.8 709 70.7
THA.LOC104803912 Tarenaya hassleriana HOM05D006346 ORTHO05D007910 1.7e-278 962.6 712 69.2
DCAR_019414 Daucus carota HOM05D006346 ORTHO05D007910 1.2e-276 956.4 679 71.0
HanXRQChr10g0313691 Helianthus annuus HOM05D006346 ORTHO05D007910 3.8e-275 951.4 683 71.4
GSVIVG01008451001 Vitis vinifera HOM05D006346 ORTHO05D007910 6.6e-275 950.7 677 71.9
Glyma.07G102300 Glycine max HOM05D006346 ORTHO05D007910 1.5e-274 949.5 679 71.9
Phvul.003G072700 Phaseolus vulgaris HOM05D006346 ORTHO05D007910 1.5e-274 949.5 681 71.5
TWI34G0405 Tripterygium wilfordii HOM05D006346 ORTHO05D007910 4.2e-274 948.0 703 69.8
Sed0021167 Sechium edule HOM05D006346 ORTHO05D007910 5.5e-274 947.6 706 68.8
Sopen07g001980 Solanum pennellii HOM05D006346 ORTHO05D007910 5.5e-274 947.6 718 68.7
Nitab4.5_0003551g0040 Nicotiana tabacum HOM05D006346 ORTHO05D007910 7.2e-274 947.2 709 69.1
CsaV3_2G007650 Cucumis sativus L. HOM05D006346 ORTHO05D007910 1.2e-273 946.4 712 69.5
PSO782G0769 Papaver somniferum HOM05D006346 ORTHO05D007910 8.0e-273 943.7 691 69.8
Rhsim01G0026600 Rhododendron simsii HOM05D006346 ORTHO05D007910 1.4e-272 943.0 711 68.9
Thhalv10024548m.g Eutrema salsugineum HOM05D006346 ORTHO05D007910 3.0e-272 941.8 714 67.8
PSO063G0785 Papaver somniferum HOM05D006346 ORTHO05D007910 3.0e-272 941.8 683 69.7
arahy.Tifrunner.gnm1.ann1.ID3JIZ Arachis hypogaea HOM05D006346 ORTHO05D007910 5.2e-272 941.0 717 69.5
Carub.0007s0978 Capsella rubella HOM05D006346 ORTHO05D007910 2.0e-271 939.1 703 68.3
Nn8g39991 Nelumbo nucifera HOM05D006346 ORTHO05D007910 2.0e-271 939.1 699 69.4
AL7G21400 Arabidopsis lyrata HOM05D006346 ORTHO05D007910 3.4e-271 938.3 711 67.5
Haze_19155 Corylus avellana HOM05D006346 ORTHO05D007910 3.4e-271 938.3 723 69.6
BcaNung01563 Brassica carinata HOM05D006346 ORTHO05D007910 7.5e-271 937.2 676 70.3
AT4G30720 Arabidopsis thaliana HOM05D006346 ORTHO05D007910 1.3e-270 936.4 711 67.5
BraA03t15070Z Brassica rapa HOM05D006346 ORTHO05D007910 2.2e-270 935.6 676 70.0
A03p60280 Brassica napus HOM05D006346 ORTHO05D007910 2.8e-270 935.3 676 70.0
CAN.G160.15 Capsicum annuum HOM05D006346 ORTHO05D007910 6.3e-270 934.1 711 68.8
Sp7g28630 Schrenkiella parvula HOM05D006346 ORTHO05D007910 2.4e-269 932.2 704 68.6
AUR62028356 Chenopodium quinoa HOM05D006346 ORTHO05D007910 1.6e-268 929.5 709 67.8
BcaNung02744 Brassica carinata HOM05D006346 ORTHO05D007910 3.5e-268 928.3 676 69.1
C07p58190 Brassica napus HOM05D006346 ORTHO05D007910 3.5e-268 928.3 676 69.1
ClCG02G014350 Citrullus lanatus HOM05D006346 ORTHO05D007910 1.0e-267 926.8 721 67.1
ECA234G1139 Erigeron canadensis HOM05D006346 ORTHO05D007910 1.0e-267 926.8 677 70.0
vmacro16782 Vaccinium macrocarpon HOM05D006346 ORTHO05D007910 1.0e-267 926.8 682 69.4
BolC7t46278H Brassica oleracea HOM05D006346 ORTHO05D007910 1.3e-267 926.4 681 68.6
Aqoxy7G03359 Aquilegia oxysepala HOM05D006346 ORTHO05D007910 3.9e-267 924.9 679 71.3
Medtr8g467050 Medicago truncatula HOM05D006346 ORTHO05D007910 3.9e-267 924.9 714 68.6
Aa31LG2G19630 Aethionema arabicum HOM05D006346 ORTHO05D007910 1.1e-266 923.3 678 68.7
Cc06_g14630 Coffea canephora HOM05D006346 ORTHO05D007910 1.6e-265 919.5 711 67.4
EL10Ac8g18923 Beta vulgaris HOM05D006346 ORTHO05D007910 2.1e-265 919.1 695 68.1
Hund08940 Selenicereus undatus HOM05D006346 ORTHO05D007910 3.6e-265 918.3 739 66.7
Nitab4.5_0002611g0100 Nicotiana tabacum HOM05D006346 ORTHO05D007910 1.4e-264 916.4 710 67.2
MSTRG.6156 Avicennia marina HOM05D006346 ORTHO05D007910 5.8e-263 911.0 718 66.7
Lsat_1_v5_gn_5_89421 Lactuca sativa HOM05D006346 ORTHO05D007910 7.5e-263 910.6 693 69.3
MELO3C004121.2 Cucumis melo HOM05D006346 ORTHO05D007910 2.4e-261 905.6 716 67.3
Ca_22901_v3 Cicer arietinum L. HOM05D006346 ORTHO05D007910 6.6e-259 897.5 677 68.5
FAN23G2716 Fragaria x ananassa HOM05D006346 ORTHO05D007910 1.9e-258 896.0 701 67.3
Migut.J01382 Erythranthe guttata HOM05D006346 ORTHO05D007910 8.3e-254 880.6 679 67.0
SGA_v2.0_scaffold45G17017 Striga asiatica HOM05D006346 ORTHO05D007910 2.1e-252 875.9 744 63.2
MD02G1005300 Malus domestica HOM05D006346 ORTHO05D007910 7.8e-252 874.0 634 71.9
Actinidia38309 Actinidia chinensis HOM05D006346 ORTHO05D007910 3.1e-248 862.1 609 71.3
HPP92_020605 Vanilla planifolia HOM05D006346 ORTHO05D007910 4.4e-247 858.2 673 64.9
Oeu052219.3 Olea europaea HOM05D006346 ORTHO05D007910 2.2e-246 855.9 740 62.3
Os05g0411200 Oryza sativa ssp. japonica HOM05D006346 ORTHO05D007910 6.4e-246 854.4 677 65.6
CDE12G0948 Ceratophyllum demersum HOM05D006346 ORTHO05D007910 1.5e-242 843.2 705 63.8
Solyc07g005870.3 Solanum lycopersicum HOM05D006346 ORTHO05D007910 8.9e-240 833.9 717 63.0
Peaxi162Scf00401g00218 Petunia axillaris HOM05D006346 ORTHO05D007910 1.3e-238 830.1 716 63.1
ATR0739G030 Amborella trichopoda HOM05D006346 ORTHO05D007910 1.7e-238 829.7 602 70.1
arahy.Tifrunner.gnm1.ann1.VMKR8Z Arachis hypogaea HOM05D006346 ORTHO05D007910 2.9e-238 828.9 602 71.1
Zm00001eb288040 Zea mays HOM05D006346 ORTHO05D007910 3.3e-234 815.5 646 63.3
Sc14g0000950 Simmondsia chinensis HOM05D006346 ORTHO05D007910 4.3e-234 815.1 613 69.2
Ah.09g228750 Amaranthus hybridus HOM05D006346 ORTHO05D007910 8.4e-230 800.8 703 61.2
Psat4g134640 Pisum sativum HOM05D006346 ORTHO05D007910 6.4e-222 774.6 620 65.3
Manes.14G142800 Manihot esculenta HOM05D006346 ORTHO05D007910 8.4e-222 774.2 583 69.1
SalBow1G6401 Salvia bowleyana HOM05D006346 ORTHO05D007910 3.2e-221 772.3 580 68.1
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 1.1e-218 763.8 633 62.7
TPR.G10032 Trifolium pratense HOM05D006346 ORTHO05D007910 1.2e-196 690.6 1255 38.0
Mapoly0021s0085 Marchantia polymorpha HOM05D006346 ORTHO05D007910 2.6e-183 646.4 653 52.7
Pp3c23_14180 Physcomitrium patens HOM05D006346 ORTHO05D007910 5.9e-183 645.2 627 54.9
SMO146G0018 Selaginella moellendorffii HOM05D006346 ORTHO05D007910 3.3e-178 629.4 622 54.0
AagrBONN_evm.TU.Sc2ySwM_344.1120 Anthoceros agrestis HOM05D006346 ORTHO05D007910 2.8e-177 626.3 659 51.4
Hma1.2p1_0028F.1_g017700 Hydrangea macrophylla HOM05D006346 ORTHO05D007910 4.0e-171 605.9 434 71.0
Cpa.g.sc46.182 Carica papaya HOM05D006346 ORTHO05D007910 1.7e-161 573.9 400 70.2
Glyma.04G155100 Glycine max HOM05D006346 ORTHO05D007910 8.0e-156 555.1 401 69.1
TAR383G0381 Trochodendron aralioides HOM05D006346 ORTHO05D007910 7.0e-152 542.0 395 71.1
Eucgr.C02507 Eucalyptus grandis HOM05D006346 ORTHO05D007910 2.6e-138 496.9 332 73.5
Cre17.g744997 Chlamydomonas reinhardtii HOM05D006346 ORTHO05D007910 2.8e-132 476.9 730 41.8
PRCOL_00000449 Prasinoderma coloniale HOM05D006346 ORTHO05D007910 1.4e-131 474.6 619 45.2
MCO14G279 Micromonas commoda HOM05D006346 ORTHO05D007910 7.6e-130 468.8 474 53.2
VMungo0251G1020 Vigna mungo HOM05D006346 ORTHO05D007910 2.4e-112 410.6 273 74.7
Eucgr.C02508 Eucalyptus grandis HOM05D006346 ORTHO05D007910 7.4e-109 399.1 315 69.8
TAR383G0466 Trochodendron aralioides HOM05D006346 ORTHO05D007910 5.5e-96 356.3 215 80.0
AUR62025356 Chenopodium quinoa HOM05D006346 ORTHO05D007910 1.1e-91 342.0 315 61.3
CAN.G160.19 Capsicum annuum HOM05D006346 ORTHO05D007910 5.3e-91 339.7 467 45.8
Cpa.g.sc46.183 Carica papaya HOM05D006346 ORTHO05D007910 7.2e-88 329.3 252 69.0
CARHR238600 Cardamine hirsuta HOM05D006346 ORTHO05D007910 9.7e-85 318.9 273 62.6
AUR62025355 Chenopodium quinoa HOM05D006346 ORTHO05D007910 6.5e-81 306.2 203 74.9
PGSC0003DMG400011203 Solanum tuberosum HOM05D006346 ORTHO05D007910 3.2e-80 303.9 203 74.9
Actinidia24372 Actinidia chinensis HOM05D006346 ORTHO05D007910 8.8e-78 295.8 630 34.8
FAN23G0300 Fragaria x ananassa HOM05D006346 ORTHO05D007910 6.3e-60 236.5 155 75.5
SEGI_02941 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 2.3e-46 191.4 147 66.0
Glyma.04G155150 Glycine max HOM05D006346 ORTHO05D007910 4.1e-43 180.6 151 65.6
CAN.G1961.3 Capsicum annuum HOM05D006346 ORTHO05D007910 6.1e-39 166.8 203 49.8
SEGI_30041 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 7.3e-32 143.3 102 66.7
MD15G1149600 Malus domestica HOM05D006346 ORTHO05D007910 6.2e-31 140.2 202 45.5
SalBow1G2918 Salvia bowleyana HOM05D006346 ORTHO05D007910 5.4e-27 127.1 122 59.0
Glyma.04G155200 Glycine max HOM05D006346 ORTHO05D007910 2.0e-26 125.2 100 66.0
SEGI_23921 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 5.4e-19 100.5 117 44.4
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 3.9e-17 94.4 80 66.2
ECA238G2318 Erigeron canadensis HOM05D006346 ORTHO05D007910 3.3e-16 91.3 68 61.8
HanXRQChr01g0001911 Helianthus annuus HOM05D006346 ORTHO05D007910 2.1e-15 88.6 56 73.2
A05p44400 Brassica napus HOM05D034890 ORTHO05D100541 3.0e-09 68.2 68 51.5


User provided reference genes

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