Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 0.0e+00 1330.5 670 100.0
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 2.1e-307 1058.5 670 78.5
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 6.4e-288 993.8 660 75.8
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 3.2e-287 991.5 657 75.2
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 3.5e-286 988.0 660 76.2
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 2.3e-282 975.3 669 74.0
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 8.9e-282 973.4 670 73.7
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 8.9e-282 973.4 669 74.0
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 1.5e-281 972.6 669 72.8
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 4.9e-280 967.6 672 72.8
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 6.4e-280 967.2 670 73.0
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 1.9e-279 965.7 660 73.5
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 4.1e-279 964.5 656 73.3
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 5.4e-279 964.1 669 72.9
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 7.0e-279 963.8 662 73.6
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 4.6e-278 961.1 671 72.7
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 7.8e-278 960.3 670 72.8
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 1.0e-277 959.9 662 73.4
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 1.3e-277 959.5 667 73.8
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 1.7e-277 959.1 661 73.8
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 5.1e-277 957.6 661 73.4
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 6.6e-277 957.2 672 72.2
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 1.1e-276 956.4 662 73.6
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 1.2e-275 953.0 670 71.8
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 2.8e-275 951.8 661 74.1
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 1.1e-274 949.9 672 72.5
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 3.4e-273 944.9 667 72.6
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 5.8e-273 944.1 660 70.9
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 4.1e-271 937.9 670 70.3
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 4.6e-270 934.5 669 69.2
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 7.8e-270 933.7 665 69.3
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 8.6e-269 930.2 659 70.9
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 3.3e-268 928.3 670 70.4
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 4.3e-268 927.9 660 70.5
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 2.1e-267 925.6 670 70.3
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 4.7e-267 924.5 629 74.7
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 4.7e-267 924.5 661 70.7
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 8.1e-267 923.7 672 70.8
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 8.1e-267 923.7 671 70.0
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 8.1e-267 923.7 660 70.8
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 8.1e-267 923.7 669 69.8
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 2.4e-263 912.1 665 68.6
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 4.6e-262 907.9 667 67.8
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 1.6e-259 899.4 655 68.9
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 3.6e-259 898.3 650 69.2
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 3.6e-259 898.3 660 68.8
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 1.4e-258 896.3 657 68.6
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 1.8e-258 896.0 657 68.9
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 4.4e-257 891.3 653 68.9
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 4.4e-257 891.3 664 67.6
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 8.4e-256 887.1 670 68.2
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 1.9e-255 885.9 676 67.9
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 3.2e-255 885.2 651 69.1
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 9.3e-255 883.6 664 67.3
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 9.3e-255 883.6 651 69.0
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 2.1e-254 882.5 670 67.2
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 2.7e-254 882.1 677 67.8
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 2.7e-254 882.1 583 76.0
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 3.9e-253 878.2 658 67.0
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 1.8e-250 869.4 658 66.7
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 2.4e-250 869.0 658 65.8
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 2.4e-250 869.0 658 65.8
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 2.4e-250 869.0 658 65.8
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 3.1e-250 868.6 670 66.7
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 4.0e-250 868.2 658 65.8
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 9.0e-250 867.1 658 65.5
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 2.0e-249 865.9 658 66.1
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 2.0e-249 865.9 652 66.7
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 8.4e-248 860.5 669 64.7
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 4.2e-247 858.2 658 66.4
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 6.0e-246 854.4 664 66.1
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 7.9e-246 854.0 625 68.3
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 1.5e-244 849.7 677 66.3
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 9.6e-244 847.0 678 64.9
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 2.0e-241 839.3 675 65.5
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 6.5e-240 834.3 661 63.5
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 1.4e-239 833.2 663 63.3
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 2.3e-237 825.9 655 63.5
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 1.5e-236 823.2 678 63.4
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 1.9e-236 822.8 657 63.3
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 7.4e-236 820.8 652 65.3
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 6.2e-235 817.8 657 63.2
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 4.0e-234 815.1 670 64.2
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 1.9e-231 806.2 657 62.3
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 4.6e-230 801.6 657 62.7
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 3.7e-227 792.0 688 62.1
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 6.9e-226 787.7 669 63.1
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 5.0e-216 755.0 659 61.2
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 2.5e-215 752.7 534 70.6
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 5.5e-215 751.5 565 65.1
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 2.6e-201 706.1 627 60.4
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 3.5e-201 705.7 559 66.4
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 7.2e-199 698.0 663 58.4
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 2.1e-198 696.4 658 57.9
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 5.2e-197 691.8 631 58.6
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 2.0e-193 679.9 661 58.1
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 5.8e-172 608.6 590 57.1
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 2.7e-169 599.7 446 67.5
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 9.5e-167 591.3 664 51.7
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 6.2e-166 588.6 665 47.8
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 3.4e-164 582.8 634 48.9
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 4.9e-163 578.9 509 60.1
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 2.0e-156 557.0 679 44.8
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 9.2e-154 548.1 664 44.7
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 8.7e-128 461.8 623 40.6
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 4.5e-84 316.6 233 65.7
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 1.0e-83 315.5 342 52.0
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 2.9e-54 217.6 282 47.9
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 5.6e-50 203.4 121 81.8
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 1.5e-47 195.3 153 64.7
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 1.6e-44 185.3 290 39.7
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 5.1e-43 180.3 110 82.7
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 3.3e-42 177.6 160 59.4
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 4.3e-42 177.2 107 78.5
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 3.6e-41 174.1 107 77.6
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 3.8e-38 164.1 164 55.5
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 8.4e-38 162.9 218 46.8
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 8.4e-38 162.9 94 85.1
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 3.0e-35 154.5 159 54.7
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 6.6e-35 153.3 135 55.6
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 2.5e-34 151.4 237 36.7
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 4.3e-34 150.6 159 52.8
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 1.5e-31 142.1 85 77.6
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 7.6e-31 139.8 100 67.0
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 8.7e-27 126.3 83 72.3
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.1e-26 125.9 92 66.3
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 4.8e-25 120.6 80 72.5
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 4.9e-22 110.5 105 53.3
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 1.4e-16 92.4 94 54.3
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 5.3e-16 90.5 89 53.9
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 4.5e-15 87.4 54 77.8
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 1.3e-14 85.9 91 51.6
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 2.4e-13 81.6 48 79.2
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 4.6e-12 77.4 200 30.0
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 6.0e-12 77.0 473 22.6
SMO117G0241 Selaginella moellendorffii HOM05D067901 ORTHO05D006758 1.7e-06 58.9 172 29.1


User provided reference genes

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