Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 6.7e-90 334.0 163 100.0
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 9.0e-87 323.6 163 96.9
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 2.1e-67 259.2 160 78.1
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 2.7e-67 258.8 163 77.9
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 6.1e-67 257.7 163 79.1
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 1.0e-66 256.9 156 78.8
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.0e-66 256.9 156 78.8
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 1.4e-66 256.5 160 78.8
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 1.4e-66 256.5 160 78.1
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 1.8e-66 256.1 163 76.7
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 1.8e-66 256.1 163 76.1
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 3.0e-66 255.4 156 78.2
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 5.1e-66 254.6 163 77.9
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 1.5e-65 253.1 163 76.7
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 1.5e-65 253.1 163 73.6
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 2.0e-65 252.7 161 76.4
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.0e-65 252.7 161 78.9
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 2.0e-65 252.7 161 78.9
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 2.0e-65 252.7 163 77.3
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 3.3e-65 251.9 159 78.0
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 4.3e-65 251.5 159 78.6
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 4.3e-65 251.5 159 78.6
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 5.7e-65 251.1 161 78.3
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 5.7e-65 251.1 160 76.2
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 5.7e-65 251.1 163 76.7
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 7.4e-65 250.8 162 74.7
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 9.7e-65 250.4 162 75.3
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.3e-64 250.0 163 75.5
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.3e-64 250.0 163 76.1
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 1.7e-64 249.6 163 76.1
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 1.7e-64 249.6 163 76.1
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 2.2e-64 249.2 163 73.6
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 2.2e-64 249.2 160 74.4
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 2.2e-64 249.2 156 76.9
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 2.8e-64 248.8 159 75.5
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 2.8e-64 248.8 161 77.0
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 3.7e-64 248.4 160 78.1
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 3.7e-64 248.4 163 73.0
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 4.8e-64 248.1 161 73.9
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 6.3e-64 247.7 160 75.6
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 1.1e-63 246.9 163 72.4
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 1.4e-63 246.5 158 77.2
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 1.8e-63 246.1 159 76.1
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 2.4e-63 245.7 163 74.8
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 3.1e-63 245.4 158 74.1
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 5.3e-63 244.6 163 73.0
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 5.3e-63 244.6 159 76.1
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 5.3e-63 244.6 163 72.4
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 5.3e-63 244.6 159 73.6
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 9.1e-63 243.8 164 75.6
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 2.0e-62 242.7 160 74.4
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 2.0e-62 242.7 163 74.8
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 2.0e-62 242.7 158 75.9
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 2.0e-62 242.7 158 75.9
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 2.6e-62 242.3 160 76.9
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 3.4e-62 241.9 158 75.9
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 5.9e-62 241.1 144 81.2
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 5.9e-62 241.1 165 70.9
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 1.0e-61 240.4 144 79.9
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 1.0e-61 240.4 166 71.7
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 1.7e-61 239.6 163 69.9
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 2.2e-61 239.2 159 70.4
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 2.2e-61 239.2 156 75.0
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 2.9e-61 238.8 166 72.9
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 2.9e-61 238.8 162 73.5
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 2.9e-61 238.8 159 73.0
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 6.5e-61 237.7 157 74.5
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 8.5e-61 237.3 158 75.3
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 1.4e-60 236.5 165 69.7
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 1.9e-60 236.1 159 72.3
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 2.5e-60 235.7 144 77.8
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 2.5e-60 235.7 159 69.8
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 4.2e-60 235.0 160 74.4
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 1.2e-59 233.4 157 71.3
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 1.2e-59 233.4 159 71.7
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 1.2e-59 233.4 142 78.9
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 1.2e-59 233.4 141 80.1
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 1.2e-59 233.4 152 75.0
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 2.1e-59 232.6 187 65.2
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 2.1e-59 232.6 158 73.4
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 4.7e-59 231.5 141 80.1
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 6.1e-59 231.1 158 69.6
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 1.0e-58 230.3 141 79.4
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 1.4e-58 229.9 159 69.8
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 1.4e-58 229.9 159 73.0
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 1.8e-58 229.6 163 70.6
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 2.3e-58 229.2 159 72.3
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 2.3e-58 229.2 156 73.7
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 3.0e-58 228.8 158 70.3
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 3.0e-58 228.8 164 71.3
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 8.8e-58 227.3 159 70.4
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 1.1e-57 226.9 159 66.0
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 5.7e-57 224.6 139 76.3
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 5.7e-57 224.6 164 68.9
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 5.7e-57 224.6 155 70.3
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 9.7e-57 223.8 137 76.6
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 9.7e-57 223.8 141 76.6
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 9.7e-57 223.8 181 63.5
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 2.2e-56 222.6 143 74.1
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 2.8e-56 222.2 156 69.9
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 2.4e-55 219.2 142 74.6
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 5.3e-55 218.0 160 70.0
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 7.0e-55 217.6 181 62.4
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 9.1e-55 217.2 141 73.8
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 1.5e-54 216.5 156 68.6
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 3.5e-54 215.3 142 71.8
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 3.8e-53 211.8 143 69.9
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 6.5e-53 211.1 156 67.3
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 6.5e-53 211.1 141 71.6
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 6.5e-53 211.1 141 71.6
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 6.5e-53 211.1 141 71.6
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 8.5e-53 210.7 202 55.4
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 1.5e-52 209.9 141 70.9
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 1.6e-51 206.5 141 70.2
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 1.6e-51 206.5 141 70.2
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 6.1e-51 204.5 141 68.8
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 6.1e-51 204.5 141 68.8
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 2.6e-49 199.1 115 82.6
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 3.3e-49 198.7 165 61.2
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 8.5e-45 184.1 159 62.3
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 1.9e-44 183.0 128 70.3
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 2.3e-42 176.0 154 55.8
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 8.8e-42 174.1 129 62.0
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 2.2e-40 169.5 116 69.8
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 2.5e-36 156.0 90 84.4
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 4.7e-35 151.8 104 69.2
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 1.2e-33 147.1 91 75.8
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 7.5e-33 144.4 151 48.3
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 3.7e-32 142.1 156 46.8
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 5.9e-30 134.8 87 74.7
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 9.5e-28 127.5 141 48.2
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 1.2e-27 127.1 98 64.3
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 3.5e-22 109.0 75 69.3
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 1.4e-18 97.1 114 44.7
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 2.6e-17 92.8 114 43.0
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 4.1e-15 85.5 50 84.0
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 3.9e-13 79.0 48 79.2


User provided reference genes

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