Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 3.4e-132 474.9 232 100.0
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 1.1e-82 310.5 222 68.5
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 1.9e-82 309.7 230 62.2
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 4.3e-82 308.5 211 67.8
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 7.3e-82 307.8 208 67.3
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 4.7e-81 305.1 222 63.5
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 1.1e-80 303.9 208 69.2
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 4.0e-80 302.0 220 66.4
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 8.9e-80 300.8 213 69.0
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 8.9e-80 300.8 200 68.0
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 1.2e-79 300.4 208 66.8
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 4.4e-79 298.5 226 62.8
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 1.7e-78 296.6 220 63.6
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 2.9e-78 295.8 230 62.6
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 4.9e-78 295.0 213 62.9
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 8.3e-78 294.3 232 60.8
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 1.9e-77 293.1 200 66.5
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 3.2e-77 292.4 221 64.3
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 3.2e-77 292.4 199 68.3
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 5.4e-77 291.6 222 63.1
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 7.0e-77 291.2 234 59.4
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 9.2e-77 290.8 208 65.4
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 2.7e-76 289.3 207 65.2
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 1.7e-75 286.6 211 62.6
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 2.3e-75 286.2 230 60.0
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 6.6e-75 284.6 217 61.8
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 6.6e-75 284.6 211 62.6
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 8.6e-75 284.3 211 61.1
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.5e-74 283.5 223 58.7
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 1.9e-74 283.1 207 65.2
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 4.3e-74 282.0 215 61.9
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 4.3e-74 282.0 220 60.9
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 4.3e-74 282.0 220 62.3
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 5.6e-74 281.6 201 64.2
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 5.6e-74 281.6 211 61.6
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 7.3e-74 281.2 219 58.9
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 1.2e-73 280.4 213 62.9
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 1.2e-73 280.4 194 66.0
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 3.6e-73 278.9 211 61.1
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 3.6e-73 278.9 201 64.2
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 4.7e-73 278.5 212 60.8
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 6.2e-73 278.1 217 59.4
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 8.1e-73 277.7 222 58.6
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 1.1e-72 277.3 229 57.6
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 1.4e-72 276.9 224 58.0
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 1.8e-72 276.6 199 63.8
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 5.2e-72 275.0 211 60.7
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 5.2e-72 275.0 175 69.1
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 6.8e-72 274.6 222 59.5
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 8.9e-72 274.2 234 57.7
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 8.9e-72 274.2 199 64.3
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 3.4e-71 272.3 232 56.9
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 4.4e-71 271.9 228 56.1
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 1.3e-70 270.4 232 57.3
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 8.3e-70 267.7 217 60.4
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.4e-69 266.9 195 62.1
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 3.2e-69 265.8 199 61.3
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 4.1e-69 265.4 233 57.1
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 4.1e-69 265.4 231 56.3
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 9.2e-69 264.2 222 56.8
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 9.2e-69 264.2 220 57.7
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 1.2e-68 263.8 202 58.4
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 1.6e-68 263.5 198 61.6
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 2.1e-68 263.1 229 56.8
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 2.1e-68 263.1 221 56.1
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 2.7e-68 262.7 205 59.5
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 7.8e-68 261.2 216 56.5
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 1.0e-67 260.8 219 56.6
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 1.3e-67 260.4 226 54.0
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 1.3e-67 260.4 230 56.5
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 1.7e-67 260.0 229 55.9
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 1.7e-67 260.0 230 56.1
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 1.7e-67 260.0 209 56.0
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 3.0e-67 259.2 209 55.0
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 3.0e-67 259.2 226 53.5
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 5.1e-67 258.5 229 55.5
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 6.6e-67 258.1 225 56.0
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 6.6e-67 258.1 211 57.8
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 6.6e-67 258.1 229 55.0
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 8.6e-67 257.7 229 55.0
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 1.5e-66 256.9 226 54.0
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 4.3e-66 255.4 229 55.0
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 4.3e-66 255.4 229 55.0
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 4.3e-66 255.4 173 69.9
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 5.6e-66 255.0 226 53.5
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 4.7e-65 251.9 221 57.0
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 4.7e-65 251.9 203 58.1
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 8.1e-65 251.1 223 56.1
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 1.8e-64 250.0 219 55.3
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 2.4e-64 249.6 189 60.3
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 5.2e-64 248.4 219 53.0
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 2.0e-63 246.5 221 52.5
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 2.6e-63 246.1 221 52.5
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 3.4e-63 245.7 196 56.6
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 7.6e-63 244.6 221 52.5
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 7.6e-63 244.6 221 52.5
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 4.9e-62 241.9 155 68.4
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 8.4e-62 241.1 192 56.8
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 1.4e-61 240.4 198 56.6
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.9e-61 240.0 199 58.8
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.9e-61 240.0 199 54.8
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 9.2e-61 237.7 198 53.0
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 2.1e-60 236.5 173 61.3
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 7.8e-60 234.6 186 65.1
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 2.3e-59 233.0 173 61.3
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.5e-58 229.6 252 46.0
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 3.3e-58 229.2 200 52.0
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 9.6e-58 227.6 206 53.9
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 2.1e-57 226.5 202 55.9
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 1.1e-56 224.2 168 60.1
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.1e-56 224.2 200 52.5
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.4e-56 223.0 242 51.2
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 2.6e-55 219.5 214 52.3
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 1.7e-54 216.9 247 46.6
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 4.2e-53 212.2 159 63.5
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 3.5e-52 209.1 190 49.5
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.3e-51 207.2 234 45.7
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 1.3e-51 207.2 196 49.0
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 1.7e-51 206.8 121 71.1
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.8e-48 196.8 201 52.2
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.8e-48 196.8 253 42.3
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 9.0e-48 194.5 199 52.3
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 4.5e-47 192.2 215 43.3
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 3.8e-46 189.1 220 45.0
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.6e-44 183.7 241 45.6
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 4.6e-44 182.2 198 41.4
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 6.0e-44 181.8 194 50.5
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 1.9e-42 176.8 109 71.6
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 2.5e-42 176.4 134 65.7
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 1.1e-37 161.0 129 50.4
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 7.6e-31 138.3 155 46.5
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.8e-25 119.8 113 55.8
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 1.8e-24 117.1 81 58.0
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.7e-22 110.5 77 57.1
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 2.3e-19 100.1 59 72.9
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 1.1e-18 97.8 83 53.0
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 3.3e-18 96.3 101 52.5
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 5.7e-18 95.5 86 52.3
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 1.4e-16 90.9 73 52.1
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 3.1e-16 89.7 100 51.0
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 3.4e-15 86.3 125 46.4
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 5.9e-15 85.5 99 48.5
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 2.9e-14 83.2 44 70.5
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 1.9e-13 80.5 65 52.3
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 9.4e-13 78.2 104 45.2
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.6e-12 77.4 53 64.2
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 3.6e-12 76.3 86 48.8
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 6.7e-11 72.0 51 62.7
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 4.4e-10 69.3 50 62.0
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 7.4e-10 68.6 33 75.8
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 1.1e-08 64.7 122 32.8
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 1.1e-08 64.7 154 27.9
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 5.9e-07 58.9 45 53.3
Actinidia18259 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.7e-06 57.4 52 55.8


User provided reference genes

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