Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 0.0e+00 2585.8 1329 100.0
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 0.0e+00 1083.2 1332 48.5
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 1.0e-297 1027.3 1356 45.2
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 1.4e-294 1016.9 1380 44.4
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 6.9e-294 1014.6 1352 44.7
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 9.0e-294 1014.2 1375 44.4
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 1.6e-290 1003.4 1332 46.1
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 2.3e-289 999.6 1338 45.4
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 3.0e-289 999.2 1346 45.0
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 3.7e-287 992.3 1354 44.7
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 1.4e-286 990.3 1358 44.0
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 1.8e-286 989.9 1345 45.3
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 1.8e-286 989.9 1360 44.6
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 4.2e-283 978.8 1287 45.3
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 3.3e-280 969.1 1348 44.0
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 3.7e-279 965.7 1348 44.8
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 1.0e-276 957.6 1336 44.7
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 1.9e-275 953.4 1381 44.4
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 5.5e-275 951.8 1356 44.9
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 1.2e-274 950.7 1370 43.6
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 1.6e-274 950.3 1251 45.0
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 2.7e-274 949.5 1253 45.3
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 3.0e-273 946.0 1373 43.2
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 8.8e-273 944.5 1243 45.5
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 7.4e-272 941.4 1373 43.1
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 2.2e-271 939.9 1304 43.9
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 1.4e-270 937.2 1374 43.0
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 1.2e-269 934.1 1317 43.9
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 1.5e-269 933.7 1495 40.5
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 1.2e-266 924.1 1280 44.7
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 2.1e-266 923.3 1268 44.7
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 1.8e-265 920.2 1329 43.8
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 3.9e-265 919.1 1342 42.9
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 5.2e-265 918.7 1241 45.1
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 7.7e-261 904.8 1353 40.9
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 2.2e-260 903.3 1155 45.6
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 1.1e-254 884.4 1211 45.0
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 9.1e-254 881.3 1330 41.4
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 4.5e-253 879.0 1312 42.4
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 1.9e-251 873.6 1364 40.7
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 3.4e-248 862.8 1314 41.0
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 2.4e-246 856.7 1345 41.0
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 5.4e-246 855.5 1184 43.1
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 5.4e-246 855.5 1365 40.2
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 4.5e-245 852.4 1318 40.8
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 5.9e-245 852.0 1328 40.5
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 5.6e-243 845.5 1325 41.4
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 1.4e-241 840.9 1304 40.6
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 2.3e-241 840.1 1280 40.6
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 3.0e-241 839.7 1331 40.2
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 8.9e-241 838.2 1313 40.4
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 7.5e-240 835.1 1165 42.3
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 9.2e-238 828.2 1338 39.7
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 5.9e-237 825.5 1267 40.6
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 8.6e-236 821.6 1363 40.1
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 1.9e-235 820.5 1167 42.2
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 4.3e-235 819.3 1267 40.3
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 8.0e-234 815.1 1323 40.4
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 5.2e-233 812.4 1225 41.1
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 1.2e-232 811.2 1242 40.5
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 9.8e-232 808.1 1303 40.3
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 4.9e-231 805.8 1324 39.8
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 1.4e-230 804.3 1362 38.4
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 1.4e-230 804.3 1225 40.0
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 1.4e-230 804.3 1337 39.5
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 4.1e-230 802.7 1188 42.1
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 3.9e-228 796.2 1250 41.0
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 5.6e-227 792.3 1342 39.7
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 3.1e-225 786.6 1293 39.6
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 7.1e-222 775.4 1330 39.1
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 3.9e-212 743.0 1317 37.0
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 9.6e-211 738.4 1180 40.1
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 9.3e-206 721.8 1351 37.9
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 5.3e-201 706.1 1194 38.7
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 9.3e-190 668.7 1290 36.2
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 1.3e-186 658.3 1247 36.2
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 4.8e-186 656.4 1359 35.7
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 1.3e-180 638.3 1233 35.9
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 4.3e-179 633.3 1196 37.8
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.8e-177 627.9 1078 39.1
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 7.6e-176 622.5 1180 36.8
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 2.5e-174 617.5 1111 36.9
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 4.6e-173 613.2 1163 38.5
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 5.9e-168 596.3 1107 37.2
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 2.2e-162 577.8 1152 35.5
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 4.5e-160 570.1 1209 35.1
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 3.2e-158 563.9 1008 37.9
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 5.1e-156 556.6 720 46.4
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.3e-154 552.0 698 47.1
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 3.8e-151 540.4 1185 34.0
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 8.5e-151 539.3 1062 36.3
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 6.1e-149 533.1 1183 33.8
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 1.1e-142 512.3 663 44.5
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 6.1e-125 453.4 707 41.3
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 1.6e-120 438.7 647 42.0
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 4.0e-116 424.1 707 39.3
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 1.6e-112 412.1 646 41.6
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 3.1e-108 397.9 823 36.3
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 9.2e-105 386.3 576 40.6
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 1.5e-102 379.0 712 37.2
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 9.5e-102 376.3 769 35.0
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 3.9e-95 354.4 642 36.1
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 3.0e-87 328.2 801 31.5
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 5.6e-86 323.9 689 36.4
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 5.6e-86 323.9 665 37.9
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.1e-84 319.7 810 30.7
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 6.9e-84 317.0 664 35.1
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 7.6e-83 313.5 313 50.8
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 3.0e-63 248.4 881 27.9
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 4.5e-59 234.6 380 35.8
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 2.7e-56 225.3 770 26.2
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 5.3e-36 157.9 292 34.9
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 3.5e-35 155.2 184 45.1
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 4.8e-29 134.8 567 29.5
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 1.1e-25 123.6 111 57.7
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 3.6e-24 118.6 267 30.0
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 4.0e-23 115.2 554 28.2
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 2.0e-22 112.8 360 25.6
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 1.2e-19 103.6 358 27.4
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 2.8e-16 92.4 163 34.4
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 1.8e-15 89.7 162 35.2
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 7.5e-14 84.3 304 25.7
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 7.0e-12 77.8 139 34.5
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 5.0e-10 71.6 480 24.4
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 3.3e-09 68.9 554 26.5
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 5.6e-09 68.2 187 31.6
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 5.6e-09 68.2 210 32.4
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 2.3e-07 62.8 536 26.1
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 4.0e-07 62.0 296 30.7
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 4.0e-07 62.0 296 30.7
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 1.2e-06 60.5 119 36.1
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 2.6e-06 59.3 82 37.8


User provided reference genes

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