Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 0.0e+00 1987.6 1008 100.0
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1361.7 1010 68.2
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1351.7 1008 68.0
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 0.0e+00 1338.2 1010 67.6
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1325.8 984 67.6
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1324.7 1008 66.3
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1319.7 1008 66.0
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1319.7 1009 66.7
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1317.4 1008 66.2
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1312.4 1007 66.4
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1310.4 1011 66.1
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1310.4 1007 66.5
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1310.0 1009 66.7
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1310.0 1008 66.4
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1308.1 1008 66.2
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1305.4 1014 66.0
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1303.1 989 66.5
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 1302.3 1073 63.1
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1295.0 1008 65.6
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1295.0 995 66.5
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1291.9 995 66.1
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1290.8 1012 65.8
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1289.6 1011 64.7
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 1282.7 1009 65.5
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 0.0e+00 1274.2 1008 64.4
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1269.6 1009 63.5
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1268.1 1008 64.0
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 0.0e+00 1267.7 1007 64.8
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1259.2 1013 64.0
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1256.1 1001 63.6
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 0.0e+00 1255.0 1075 61.9
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1239.2 1013 63.3
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1235.3 987 63.0
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1234.2 1013 62.9
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1232.6 1012 63.0
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 0.0e+00 1231.9 1009 61.7
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 0.0e+00 1230.3 1013 61.9
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 0.0e+00 1229.2 1010 62.1
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1226.5 1009 62.0
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 0.0e+00 1222.6 1011 60.8
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 0.0e+00 1221.1 1009 62.3
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1217.2 1008 61.6
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 0.0e+00 1217.2 1010 61.2
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 0.0e+00 1215.3 1058 60.0
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 0.0e+00 1214.9 1008 61.8
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 0.0e+00 1214.5 1013 62.1
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1213.0 1012 62.0
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 0.0e+00 1210.7 1013 61.5
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 0.0e+00 1210.7 1011 61.2
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 0.0e+00 1207.6 1012 61.3
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 0.0e+00 1207.6 1013 62.5
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 0.0e+00 1207.2 1012 62.2
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1206.8 1011 61.6
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1206.8 1008 61.2
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 0.0e+00 1205.3 1013 61.5
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 0.0e+00 1204.5 1011 61.0
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 0.0e+00 1202.2 1013 61.9
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 0.0e+00 1201.0 1016 61.5
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 0.0e+00 1200.7 1012 60.0
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 0.0e+00 1195.6 1029 60.0
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 0.0e+00 1191.0 1021 60.4
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 0.0e+00 1191.0 1019 60.1
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 0.0e+00 1186.4 1012 61.2
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1185.6 1008 60.5
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1184.9 1010 60.6
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1182.5 1012 60.5
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 0.0e+00 1182.5 1012 60.7
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1177.5 1012 60.3
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1176.4 1008 60.9
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1174.1 1010 60.0
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 0.0e+00 1174.1 1010 60.0
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1156.7 1010 59.0
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1155.2 1010 58.8
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 0.0e+00 1151.7 1007 59.5
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 0.0e+00 1149.0 1014 59.0
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1139.8 1016 58.5
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 0.0e+00 1131.7 1013 58.6
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1125.2 1011 58.3
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 0.0e+00 1100.9 1010 57.7
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 0.0e+00 1080.9 982 58.7
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 2.2e-308 1062.4 783 69.1
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 2.7e-306 1055.4 1012 55.2
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 1.2e-295 1020.0 783 67.7
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 1.4e-294 1016.5 797 65.6
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 7.6e-293 1010.7 1017 52.8
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 1.1e-288 996.9 1008 52.7
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 3.0e-273 945.7 695 67.8
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 5.7e-256 888.3 975 49.6
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 5.0e-252 875.2 608 70.7
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 3.6e-250 869.0 594 71.7
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 3.6e-234 815.8 748 56.7
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 3.7e-231 805.8 1030 44.5
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 1.0e-228 797.7 1032 44.3
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 3.2e-227 792.7 984 45.3
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 2.0e-221 773.5 772 52.2
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 4.1e-214 749.2 864 47.5
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 3.6e-210 736.1 1009 43.8
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 6.6e-196 688.7 504 66.3
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 1.9e-195 687.2 526 65.4
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 4.3e-187 659.4 453 74.4
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 7.8e-181 638.6 542 59.4
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 1.1e-179 634.8 434 74.0
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 1.4e-177 627.9 1024 38.2
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 1.2e-176 624.8 1043 37.9
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 4.6e-173 612.8 520 61.0
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.5e-171 607.1 572 56.6
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 4.6e-157 559.7 1018 35.5
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 1.9e-150 537.7 421 64.4
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 2.1e-149 534.3 508 55.3
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 3.1e-145 520.4 511 54.0
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 1.8e-137 494.6 458 54.8
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 1.5e-131 474.9 623 45.4
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 1.8e-116 424.9 1070 30.0
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 3.1e-113 414.1 236 83.9
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 2.1e-109 401.4 275 73.1
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 3.2e-102 377.5 236 78.4
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 4.2e-102 377.1 532 41.7
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.5e-99 368.6 427 48.7
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 3.2e-89 334.3 296 56.8
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.3e-68 265.0 315 47.0
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 5.8e-67 260.4 330 46.1
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.9e-65 255.4 315 46.0
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 7.8e-64 250.0 452 37.4
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 3.6e-53 214.5 410 37.1
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 4.8e-53 214.2 270 44.8
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 2.2e-50 205.3 270 44.1
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 7.1e-49 200.3 110 85.5
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 2.7e-48 198.4 146 69.2
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 2.7e-48 198.4 146 69.2
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 1.3e-45 189.5 763 27.0
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 7.1e-41 173.7 811 25.4
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 2.1e-40 172.2 228 42.5
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 5.1e-39 167.5 396 32.8
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 7.4e-38 163.7 754 24.0
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 1.6e-37 162.5 392 31.9
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 1.0e-34 153.3 311 35.0
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 1.9e-33 149.1 160 50.6
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 1.3e-31 142.9 114 65.8
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 1.6e-29 136.0 283 34.6
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 4.8e-29 134.4 119 63.0
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 5.3e-28 131.0 76 84.2
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 4.6e-24 117.9 185 38.4
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 1.3e-23 116.3 94 61.7
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 3.7e-21 108.2 154 40.9
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 2.9e-18 98.6 184 34.8
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 1.1e-17 96.7 54 87.0
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 1.1e-17 96.7 89 52.8
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 9.7e-14 83.6 446 23.3
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 3.7e-13 81.6 71 62.0
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 4.8e-13 81.3 46 80.4
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 1.8e-12 79.3 65 58.5
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 9.1e-12 77.0 49 69.4
BcaB06g26910 Brassica carinata HOM05D000375 ORTHO05D000240 1.3e-10 73.2 90 44.4
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 7.2e-09 67.4 105 46.7


User provided reference genes

Program Settings