Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0077 Punica granatum HOM05D004062 ORTHO05D004417 7.8e-74 280.4 145 100.0
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 9.6e-32 140.6 139 53.2
Eucgr.B02857 Eucalyptus grandis HOM05D004062 ORTHO05D004417 1.2e-26 123.6 141 51.8
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 1.6e-26 123.2 143 47.6
Ciclev10017934m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.8e-25 119.8 135 48.9
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 3.3e-24 115.5 143 47.6
Ciclev10017837m.g Citrus clementina HOM05D004062 ORTHO05D004417 9.6e-24 114.0 136 50.0
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 2.8e-23 112.5 143 46.2
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 2.8e-23 112.5 147 46.9
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 2.8e-23 112.5 143 46.9
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 3.7e-23 112.1 144 45.1
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 1.1e-22 110.5 136 48.5
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.4e-22 110.2 148 45.9
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 4.0e-22 108.6 148 45.9
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.0e-22 108.6 148 45.9
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.0e-22 108.6 148 45.9
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.0e-22 108.6 142 45.1
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.0e-22 108.6 148 45.3
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 1.2e-21 107.1 144 45.1
FAN07G0530 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.0e-21 106.3 151 47.7
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 2.0e-21 106.3 144 45.8
Ciclev10018020m.g Citrus clementina HOM05D004062 ORTHO05D004417 5.8e-21 104.8 138 47.1
Haze_00662 Corylus avellana HOM05D004062 ORTHO05D004417 7.6e-21 104.4 137 48.9
Dinv16146 Davidia involucrata HOM05D004062 ORTHO05D004417 7.6e-21 104.4 134 44.8
RcHm_v2.0_Chr4g0434241 Rosa chinensis HOM05D004062 ORTHO05D004417 1.3e-20 103.6 148 46.6
Ciclev10018255m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.7e-20 103.2 143 43.4
FvH4_4g26620 Fragaria vesca HOM05D004062 ORTHO05D004417 2.2e-20 102.8 151 46.4
FAN12G1602 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.2e-20 102.8 151 46.4
FAN12G1821 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.9e-20 102.4 151 47.0
TWI31G0152 Tripterygium wilfordii HOM05D004062 ORTHO05D004417 4.9e-20 101.7 132 45.5
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 4.9e-20 101.7 139 43.9
Hma1.2p1_0767F.1_g215470 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 6.5e-20 101.3 146 43.2
FvH4_4g26590 Fragaria vesca HOM05D004062 ORTHO05D004417 1.4e-19 100.1 151 45.7
Cpa.g.sc314.3 Carica papaya HOM05D004062 ORTHO05D004417 3.2e-19 99.0 132 44.7
Atru.chr11.263 Acer truncatum HOM05D004062 ORTHO05D004417 5.5e-19 98.2 144 39.6
Atru.chr11.283 Acer truncatum HOM05D004062 ORTHO05D004417 5.5e-19 98.2 144 39.6
FAN17G2061 Fragaria x ananassa HOM05D004062 ORTHO05D004417 5.5e-19 98.2 144 45.8
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 5.5e-19 98.2 133 45.9
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 7.1e-19 97.8 144 43.1
FvH4_4g26582 Fragaria vesca HOM05D004062 ORTHO05D004417 9.3e-19 97.4 147 41.5
FAN22G1944 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.1e-18 96.3 147 41.5
FAN12G3833 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.7e-18 95.9 148 44.6
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 4.6e-18 95.1 142 43.0
Manes.14G107900 Manihot esculenta HOM05D004062 ORTHO05D004417 4.6e-18 95.1 136 43.4
FAN22G1832 Fragaria x ananassa HOM05D004062 ORTHO05D004417 7.9e-18 94.4 144 45.1
Ciclev10017483m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.0e-17 94.0 134 46.3
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 1.0e-17 94.0 144 41.0
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 5.1e-17 91.7 131 43.5
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.5e-16 90.1 144 43.1
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.9e-16 89.7 148 41.2
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 1.9e-16 89.7 141 39.7
CANSAT01G2259 Cannabis sativa HOM05D004062 ORTHO05D004417 2.5e-16 89.4 140 42.1
Actinidia14929 Actinidia chinensis HOM05D004062 ORTHO05D004417 3.3e-16 89.0 142 41.5
Eucgr.G02232 Eucalyptus grandis HOM05D004062 ORTHO05D004417 3.3e-16 89.0 137 40.1
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 4.3e-16 88.6 138 44.2
Rhsim09G0103200 Rhododendron simsii HOM05D004062 ORTHO05D004417 7.4e-16 87.8 136 38.2
ClCG01G005940 Citrullus lanatus HOM05D004062 ORTHO05D004417 1.3e-15 87.0 143 42.0
Cfa015828 Carpinus fangiana HOM05D004062 ORTHO05D004417 2.2e-15 86.3 144 42.4
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 3.7e-15 85.5 145 40.0
Dinv31584 Davidia involucrata HOM05D004062 ORTHO05D004417 3.7e-15 85.5 117 43.6
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 3.7e-15 85.5 144 39.6
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 3.7e-15 85.5 144 43.8
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 6.3e-15 84.7 145 38.6
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 8.2e-15 84.3 142 36.6
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 2.4e-14 82.8 142 35.9
Rhsim09G0103100 Rhododendron simsii HOM05D004062 ORTHO05D004417 2.4e-14 82.8 138 37.0
Cc11_g09580 Coffea canephora HOM05D004062 ORTHO05D004417 4.1e-14 82.0 144 40.3
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 5.3e-14 81.6 140 35.7
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 9.0e-14 80.9 141 34.0
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.0e-13 79.7 133 36.8
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 2.6e-13 79.3 132 41.7
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 3.4e-13 79.0 138 36.2
Cfa015829 Carpinus fangiana HOM05D004062 ORTHO05D004417 3.4e-13 79.0 106 47.2
CiPaw.05G243400 Carya illinoinensis HOM05D004062 ORTHO05D004417 4.5e-13 78.6 127 38.6
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 4.5e-13 78.6 136 41.2
Atru.chr1.1607 Acer truncatum HOM05D004062 ORTHO05D004417 7.7e-13 77.8 147 36.7
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 7.7e-13 77.8 142 38.0
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 7.7e-13 77.8 143 37.8
MELO3C005337.2 Cucumis melo HOM05D004062 ORTHO05D004417 7.7e-13 77.8 135 38.5
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 1.0e-12 77.4 131 35.9
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 1.3e-12 77.0 144 35.4
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 1.3e-12 77.0 131 36.6
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.3e-12 77.0 132 37.9
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 2.9e-12 75.9 139 34.5
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 2.9e-12 75.9 139 34.5
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 6.5e-12 74.7 138 37.0
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.1e-11 73.9 139 41.7
Ciclev10013069m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.1e-11 73.9 141 36.9
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.1e-11 73.9 136 33.1
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 2.5e-11 72.8 130 35.4
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 2.5e-11 72.8 136 34.6
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 7.2e-11 71.2 142 35.9
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 7.2e-11 71.2 142 35.9
Rhsim10G0073300 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.6e-10 70.1 139 35.3
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 2.7e-10 69.3 136 34.6
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 4.6e-10 68.6 144 36.1
Aqoxy3G00188 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 7.9e-10 67.8 136 36.8
Nn3g21602 Nelumbo nucifera HOM05D003529 ORTHO05D004106 7.9e-10 67.8 136 37.5
PGSC0003DMG400016976 Solanum tuberosum HOM05D004062 ORTHO05D004417 1.0e-09 67.4 130 33.8
PGSC0003DMG400030667 Solanum tuberosum HOM05D004062 ORTHO05D004417 1.0e-09 67.4 130 33.8
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 1.4e-09 67.0 136 35.3
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 1.8e-09 66.6 130 34.6
VMungo1383G0607 Vigna mungo HOM05D004062 ORTHO05D004417 1.8e-09 66.6 142 35.2
Ciclev10013071m.g Citrus clementina HOM05D004062 ORTHO05D004417 2.3e-09 66.2 140 33.6
DCAR_023626 Daucus carota HOM05D004062 ORTHO05D004417 3.0e-09 65.9 134 33.6
PGSC0003DMG400036326 Solanum tuberosum HOM05D004062 ORTHO05D004417 3.0e-09 65.9 138 32.6
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 3.9e-09 65.5 130 34.6
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 3.9e-09 65.5 140 32.9
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 3.9e-09 65.5 129 35.7
CsaV3_5G028760 Cucumis sativus L. HOM05D004062 ORTHO05D004417 6.7e-09 64.7 139 33.1
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 8.8e-09 64.3 130 33.8
Medtr7g082730 Medicago truncatula HOM05D004062 ORTHO05D004417 1.1e-08 63.9 130 35.4
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 1.1e-08 63.9 143 35.0
ATR0706G120 Amborella trichopoda HOM05D003529 ORTHO05D004106 2.0e-08 63.2 135 32.6
Glyma.02G089500 Glycine max HOM05D004062 ORTHO05D004417 2.0e-08 63.2 142 34.5
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 2.5e-08 62.8 143 34.3
Phvul.008G008800 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 4.3e-08 62.0 135 37.8
SGA_v2.0_scaffold334G49044 Striga asiatica HOM05D003529 ORTHO05D004106 4.3e-08 62.0 135 31.1
arahy.Tifrunner.gnm1.ann1.VI73GY Arachis hypogaea HOM05D003529 ORTHO05D004106 1.3e-07 60.5 136 31.6
Ciclev10013668m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.3e-07 60.5 144 33.3
Medtr7g082700 Medicago truncatula HOM05D004062 ORTHO05D004417 1.3e-07 60.5 132 35.6
Nitab4.5_0001544g0150 Nicotiana tabacum HOM05D003529 ORTHO05D004106 1.3e-07 60.5 142 29.6
CsaV3_4G001080 Cucumis sativus L. HOM05D003529 ORTHO05D004106 1.7e-07 60.1 134 32.1
Lalb_Chr17g0335981 Lupinus albus HOM05D004062 ORTHO05D004417 1.7e-07 60.1 140 33.6
VMungo1383G2158 Vigna mungo HOM05D004062 ORTHO05D004417 1.7e-07 60.1 142 31.7
Rhsim13G0007500 Rhododendron simsii HOM05D003529 ORTHO05D004106 2.2e-07 59.7 130 35.4
HPP92_006902 Vanilla planifolia HOM05D003529 ORTHO05D004106 2.2e-07 59.7 127 33.1
Medtr7g082740 Medicago truncatula HOM05D004062 ORTHO05D004417 2.8e-07 59.3 132 35.6
Glyma.18G293500 Glycine max HOM05D004062 ORTHO05D004417 4.8e-07 58.5 142 31.7
Psat3g097360 Pisum sativum HOM05D004062 ORTHO05D004417 8.2e-07 57.8 131 35.1
SEGI_14476 Sequoiadendron giganteum HOM05D003529 ORTHO05D004106 8.2e-07 57.8 136 30.9
HPP92_009718 Vanilla planifolia HOM05D004062 ORTHO05D004417 8.2e-07 57.8 146 30.1
Lj1g0017758 Lotus japonicus HOM05D004062 ORTHO05D004417 1.1e-06 57.4 148 32.4
MBI18_g42974_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 1.1e-06 57.4 138 31.9
MBI18_g45029_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 1.1e-06 57.4 138 31.9
Oeu012583.1 Olea europaea HOM05D004062 ORTHO05D004417 1.4e-06 57.0 144 32.6
Oeu047438.1 Olea europaea HOM05D004062 ORTHO05D004417 1.4e-06 57.0 129 31.8
SEGI_27005 Sequoiadendron giganteum HOM05D003529 ORTHO05D004106 1.8e-06 56.6 135 33.3
Psat3g097280 Pisum sativum HOM05D004062 ORTHO05D004417 5.3e-06 55.1 140 32.1
Rhsim01G0288700 Rhododendron simsii HOM05D003529 ORTHO05D004106 5.3e-06 55.1 132 34.1
Cfa005855 Carpinus fangiana HOM05D003529 ORTHO05D004106 6.9e-06 54.7 138 33.3
DCAR_010706 Daucus carota HOM05D004062 ORTHO05D004417 6.9e-06 54.7 135 31.9
Oeu011480.1 Olea europaea HOM05D003529 ORTHO05D004106 6.9e-06 54.7 131 31.3
Ca_08095_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 9.1e-06 54.3 135 29.6
DCAR_010713 Daucus carota HOM05D004062 ORTHO05D004417 9.1e-06 54.3 132 34.8
Phvul.008G008700 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 9.1e-06 54.3 142 31.0


User provided reference genes

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