Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0074 Punica granatum HOM05D007009 ORTHO05D008451 2.9e-114 415.2 208 100.0
Eucgr.B03385 Eucalyptus grandis HOM05D007009 ORTHO05D008451 2.1e-56 223.0 208 60.1
Dinv31143 Davidia involucrata HOM05D007009 ORTHO05D008451 4.6e-51 205.3 219 57.1
Nn4g22971 Nelumbo nucifera HOM05D007009 ORTHO05D008451 3.0e-50 202.6 206 54.9
Cfa009076 Carpinus fangiana HOM05D007009 ORTHO05D008451 5.0e-50 201.8 218 55.0
Aqoxy3G03177 Aquilegia oxysepala HOM05D007009 ORTHO05D008451 1.5e-49 200.3 175 58.3
Dinv24931 Davidia involucrata HOM05D000094 ORTHO05D002904 3.3e-49 199.1 177 60.5
TAR374G0768 Trochodendron aralioides HOM05D007009 ORTHO05D008451 3.3e-49 199.1 194 59.3
PSO832G0198 Papaver somniferum HOM05D007009 ORTHO05D008451 9.5e-49 197.6 211 51.7
TWI18G0515 Tripterygium wilfordii HOM05D007009 ORTHO05D008451 4.7e-48 195.3 173 58.4
GSVIVG01020129001 Vitis vinifera HOM05D007009 ORTHO05D008451 6.2e-48 194.9 178 59.6
PSO591G0441 Papaver somniferum HOM05D007009 ORTHO05D008451 1.1e-47 194.1 216 52.3
Actinidia08196 Actinidia chinensis HOM05D007009 ORTHO05D008451 1.4e-47 193.7 213 57.3
Prupe.1G262900 Prunus persica HOM05D007009 ORTHO05D008451 2.3e-47 193.0 213 53.1
Atru.chr11.1917 Acer truncatum HOM05D007009 ORTHO05D008451 1.5e-46 190.3 214 52.8
CSS0013437 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 2.6e-46 189.5 224 52.7
Ciclev10032750m.g Citrus clementina HOM05D007009 ORTHO05D008451 2.6e-46 189.5 204 54.4
COL.COLO4_36263 Corchorus olitorius HOM05D007009 ORTHO05D008451 3.4e-46 189.1 205 52.7
Manes.01G193800 Manihot esculenta HOM05D007009 ORTHO05D008451 4.4e-46 188.7 215 52.1
Cc11_g13910 Coffea canephora HOM05D007009 ORTHO05D008451 9.8e-46 187.6 218 50.0
CsaV3_5G032050 Cucumis sativus L. HOM05D007009 ORTHO05D008451 1.6e-43 180.3 208 52.4
Medtr5g037120 Medicago truncatula HOM05D007009 ORTHO05D008451 1.6e-43 180.3 178 54.5
Lalb_Chr05g0217381 Lupinus albus HOM05D007009 ORTHO05D008451 4.6e-43 178.7 192 52.1
CANSAT01G1662 Cannabis sativa HOM05D007009 ORTHO05D008451 1.0e-42 177.6 215 48.8
THA.LOC104808792 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 1.0e-42 177.6 169 54.4
Hma1.2p1_0265F.1_g106360 Hydrangea macrophylla HOM05D007009 ORTHO05D008451 1.3e-42 177.2 209 53.1
QL03p067658 Quercus lobata HOM05D007009 ORTHO05D008451 1.7e-42 176.8 219 49.8
Thecc.02G237500 Theobroma cacao HOM05D007009 ORTHO05D008451 2.3e-42 176.4 204 50.5
Gohir.A05G320100 Gossypium hirsutum HOM05D007009 ORTHO05D008451 3.9e-42 175.6 202 53.0
ClCG05G024860 Citrullus lanatus HOM05D007009 ORTHO05D008451 5.1e-42 175.3 211 49.8
Nitab4.5_0001030g0090 Nicotiana tabacum HOM05D007009 ORTHO05D008451 1.1e-41 174.1 222 45.9
Gohir.D05G322400 Gossypium hirsutum HOM05D007009 ORTHO05D008451 1.9e-41 173.3 212 50.0
TPR.G26720 Trifolium pratense HOM05D007009 ORTHO05D008451 1.9e-41 173.3 178 51.7
Gorai.009G346000 Gossypium raimondii HOM05D007009 ORTHO05D008451 4.3e-41 172.2 212 50.0
CiPaw.06G077800 Carya illinoinensis HOM05D007009 ORTHO05D008451 7.3e-41 171.4 218 50.0
Duzib251G0800 Durio zibethinus HOM05D007009 ORTHO05D008451 7.3e-41 171.4 176 54.0
Glyma.02G026000 Glycine max HOM05D007009 ORTHO05D008451 7.3e-41 171.4 210 50.5
Nitab4.5_0008607g0010 Nicotiana tabacum HOM05D007009 ORTHO05D008451 7.3e-41 171.4 222 45.5
PGSC0003DMG401022631 Solanum tuberosum HOM05D007009 ORTHO05D008451 7.3e-41 171.4 178 52.2
Peaxi162Scf00828g00312 Petunia axillaris HOM05D007009 ORTHO05D008451 9.5e-41 171.0 178 52.2
Sed0027578 Sechium edule HOM05D007009 ORTHO05D008451 9.5e-41 171.0 176 52.3
Potri.008G191700 Populus trichocarpa HOM05D007009 ORTHO05D008451 1.6e-40 170.2 177 54.2
SalBow2G0075 Salvia bowleyana HOM05D007009 ORTHO05D008451 4.7e-40 168.7 174 53.4
Solyc05g006580.3 Solanum lycopersicum HOM05D007009 ORTHO05D008451 4.7e-40 168.7 177 52.5
Carub.0002s1666 Capsella rubella HOM05D007009 ORTHO05D008451 8.1e-40 167.9 212 49.1
arahy.Tifrunner.gnm1.ann1.8B6YVA Arachis hypogaea HOM05D007009 ORTHO05D008451 1.1e-39 167.5 176 51.7
Sopen05g002530 Solanum pennellii HOM05D007009 ORTHO05D008451 1.8e-39 166.8 178 51.1
Potri.010G039466 Populus trichocarpa HOM05D007009 ORTHO05D008451 4.0e-39 165.6 166 55.4
Aa31LG4G10880 Aethionema arabicum HOM05D007009 ORTHO05D008451 6.8e-39 164.9 172 51.7
BolC6t39457H Brassica oleracea HOM05D007009 ORTHO05D008451 6.8e-39 164.9 209 48.3
Glyma.01G038700 Glycine max HOM05D007009 ORTHO05D008451 6.8e-39 164.9 177 53.1
C06p43850 Brassica napus HOM05D007009 ORTHO05D008451 8.9e-39 164.5 177 50.8
CiPaw.05G143700 Carya illinoinensis HOM05D007009 ORTHO05D008451 8.9e-39 164.5 214 47.7
FAN07G0981 Fragaria x ananassa HOM05D007009 ORTHO05D008451 8.9e-39 164.5 176 49.4
FAN17G0686 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.2e-38 164.1 176 49.4
Sc11g0001470 Simmondsia chinensis HOM05D007009 ORTHO05D008451 1.2e-38 164.1 205 44.9
FvH4_4g35380 Fragaria vesca HOM05D007009 ORTHO05D008451 1.5e-38 163.7 174 50.0
FAN12G0678 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.5e-38 163.7 174 50.0
arahy.Tifrunner.gnm1.ann1.IMS4B0 Arachis hypogaea HOM05D007009 ORTHO05D008451 2.6e-38 162.9 228 45.2
RcHm_v2.0_Chr4g0444991 Rosa chinensis HOM05D007009 ORTHO05D008451 2.6e-38 162.9 180 49.4
FAN22G1672 Fragaria x ananassa HOM05D007009 ORTHO05D008451 3.4e-38 162.5 176 49.4
Haze_12109 Corylus avellana HOM05D007009 ORTHO05D008451 4.4e-38 162.2 192 52.6
MSTRG.7846 Avicennia marina HOM05D007009 ORTHO05D008451 5.8e-38 161.8 204 48.5
CAN.G27.64 Capsicum annuum HOM05D007009 ORTHO05D008451 9.9e-38 161.0 177 49.7
Lj2g0006218 Lotus japonicus HOM05D007009 ORTHO05D008451 9.9e-38 161.0 221 45.7
Migut.L01370 Erythranthe guttata HOM05D007009 ORTHO05D008451 4.9e-37 158.7 207 46.9
Hund25306 Selenicereus undatus HOM05D007009 ORTHO05D008451 8.3e-37 157.9 208 44.2
Ah.03g132140 Amaranthus hybridus HOM05D007009 ORTHO05D008451 1.1e-36 157.5 207 44.9
BcaC08g46448 Brassica carinata HOM05D007009 ORTHO05D008451 1.4e-36 157.1 209 46.9
Thhalv10019139m.g Eutrema salsugineum HOM05D007009 ORTHO05D008451 5.4e-36 155.2 215 45.1
VMungo1215G0662 Vigna mungo HOM05D007009 ORTHO05D008451 5.4e-36 155.2 141 58.9
MD16G1083100 Malus domestica HOM05D007009 ORTHO05D008451 7.1e-36 154.8 222 47.3
MELO3C012041.2 Cucumis melo HOM05D007009 ORTHO05D008451 9.2e-36 154.5 171 53.8
AUR62026539 Chenopodium quinoa HOM05D007009 ORTHO05D008451 1.6e-35 153.7 208 47.1
Sp5g25090 Schrenkiella parvula HOM05D007009 ORTHO05D008451 2.7e-35 152.9 212 45.3
Ca_15204_v3 Cicer arietinum L. HOM05D007009 ORTHO05D008451 1.7e-34 150.2 169 52.1
Duzib268G1291 Durio zibethinus HOM05D007009 ORTHO05D008451 3.0e-34 149.4 176 48.3
AT1G69980 Arabidopsis thaliana HOM05D007009 ORTHO05D008451 1.5e-33 147.1 218 44.0
AL2G29220 Arabidopsis lyrata HOM05D007009 ORTHO05D008451 1.9e-33 146.7 215 44.2
Sabra10G0027300 Salix brachista HOM05D007009 ORTHO05D008451 1.9e-33 146.7 227 41.9
HanXRQChr08g0209091 Helianthus annuus HOM05D007009 ORTHO05D008451 9.5e-33 144.4 170 47.6
BcaB03g14776 Brassica carinata HOM05D007009 ORTHO05D008451 8.1e-32 141.4 191 45.0
Lj6A798T55 Lonicera japonica HOM05D007009 ORTHO05D008451 8.1e-32 141.4 132 53.8
CARHR063080 Cardamine hirsuta HOM05D007009 ORTHO05D008451 1.4e-31 140.6 210 44.3
Rhsim12G0053000 Rhododendron simsii HOM05D007009 ORTHO05D008451 1.8e-31 140.2 186 45.7
DCAR_026574 Daucus carota HOM05D007009 ORTHO05D008451 1.2e-30 137.5 171 45.0
Psat2g116400 Pisum sativum HOM05D007009 ORTHO05D008451 2.0e-30 136.7 136 52.2
A07p36430 Brassica napus HOM05D007009 ORTHO05D008451 9.9e-30 134.4 168 45.2
EL10Ac6g13085 Beta vulgaris HOM05D007009 ORTHO05D008451 2.4e-28 129.8 166 47.0
Os09g0560400 Oryza sativa ssp. japonica HOM05D007009 ORTHO05D008451 2.7e-27 126.3 167 43.7
vmacro01210 Vaccinium macrocarpon HOM05D007009 ORTHO05D008451 2.7e-27 126.3 287 34.1
ECA233G5592 Erigeron canadensis HOM05D007009 ORTHO05D008451 4.6e-27 125.6 163 43.6
SGA_v2.0_scaffold166G38305 Striga asiatica HOM05D007009 ORTHO05D008451 7.8e-27 124.8 161 46.0
Cpa.g.sc5.312 Carica papaya HOM05D007009 ORTHO05D008451 5.1e-26 122.1 139 51.8
Lsat_1_v5_gn_8_161781 Lactuca sativa HOM05D007009 ORTHO05D008451 8.7e-26 121.3 181 39.8
Zm00001eb104690 Zea mays HOM05D007009 ORTHO05D008451 2.5e-25 119.8 177 39.5
Phvul.002G078700 Phaseolus vulgaris HOM05D007009 ORTHO05D008451 3.6e-24 115.9 178 40.4
Mapoly0049s0134 Marchantia polymorpha HOM05D007009 ORTHO05D008451 8.1e-24 114.8 165 38.2
unitig_8.g2944 Utricularia gibba HOM05D007009 ORTHO05D008451 1.8e-23 113.6 138 46.4
BcaB03g14779 Brassica carinata HOM05D007009 ORTHO05D008451 5.8e-22 108.6 205 38.5
CDE10G1217 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 1.1e-20 104.4 148 45.3
AUR62039445 Chenopodium quinoa HOM05D007009 ORTHO05D008451 1.6e-19 100.5 140 44.3
MBI15_g31419_MAGBIO Magnolia biondii HOM05D007009 ORTHO05D008451 1.5e-17 94.0 102 50.0
Pp3c4_16120 Physcomitrium patens HOM05D007009 ORTHO05D008451 9.6e-17 91.3 166 36.1
BolC8t48483H Brassica oleracea HOM05D007009 ORTHO05D008451 9.9e-14 81.3 67 55.2
CSS0007469 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 6.0e-11 72.0 85 50.6
THA.LOC104822186 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 1.9e-09 67.0 154 36.4
C03p84900 Brassica napus HOM05D000455 ORTHO05D008451 1.3e-08 64.3 66 50.0
BolC3t20782H Brassica oleracea HOM05D000455 ORTHO05D008451 1.3e-08 64.3 66 50.0
SEGI_38065 Sequoiadendron giganteum HOM05D007009 ORTHO05D008451 3.7e-08 62.8 124 33.1
BraA03t15512Z Brassica rapa HOM05D007009 ORTHO05D031827 3.1e-07 59.7 80 42.5


User provided reference genes

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