Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0055 Punica granatum HOM05D005659 ORTHO05D007059 5.2e-78 294.3 145 100.0
Ciclev10029515m.g Citrus clementina HOM05D005659 ORTHO05D007059 3.4e-61 238.4 143 82.5
Thecc.09G277800 Theobroma cacao HOM05D005659 ORTHO05D007059 1.4e-59 233.0 146 79.5
A09p65930 Brassica napus HOM05D005659 ORTHO05D007059 9.2e-59 230.3 144 75.7
BraA09t41937Z Brassica rapa HOM05D005659 ORTHO05D007059 9.2e-59 230.3 144 75.7
Eucgr.B03824 Eucalyptus grandis HOM05D005659 ORTHO05D007059 1.6e-58 229.6 143 76.2
BcaC07g42532 Brassica carinata HOM05D005659 ORTHO05D007059 2.7e-58 228.8 144 75.7
Cc01_g08780 Coffea canephora HOM05D005659 ORTHO05D007059 6.0e-58 227.6 149 75.2
Atru.chr3.3161 Acer truncatum HOM05D005659 ORTHO05D007059 7.8e-58 227.3 145 74.5
Potri.004G199400 Populus trichocarpa HOM05D005659 ORTHO05D007059 1.0e-57 226.9 149 74.5
BolC8t52533H Brassica oleracea HOM05D005659 ORTHO05D007059 2.3e-57 225.7 144 73.6
Sabra09G0125800 Salix brachista HOM05D005659 ORTHO05D007059 3.0e-57 225.3 150 74.7
Sp1g07030 Schrenkiella parvula HOM05D005659 ORTHO05D007059 3.0e-57 225.3 144 75.0
Sabra04G0134500 Salix brachista HOM05D005659 ORTHO05D007059 3.9e-57 224.9 149 75.2
Aa31sc785G10 Aethionema arabicum HOM05D005659 ORTHO05D007059 5.1e-57 224.6 145 73.8
Cfa009983 Carpinus fangiana HOM05D005659 ORTHO05D007059 5.1e-57 224.6 150 74.0
BcaB07g34086 Brassica carinata HOM05D005659 ORTHO05D007059 6.6e-57 224.2 144 75.0
BcaC07g41946 Brassica carinata HOM05D005659 ORTHO05D007059 6.6e-57 224.2 144 73.6
C05p06520 Brassica napus HOM05D005659 ORTHO05D007059 6.6e-57 224.2 144 75.0
C08p50030 Brassica napus HOM05D005659 ORTHO05D007059 6.6e-57 224.2 144 73.6
BolC5t29412H Brassica oleracea HOM05D005659 ORTHO05D007059 6.6e-57 224.2 144 75.0
TWI75G1160 Tripterygium wilfordii HOM05D005659 ORTHO05D007059 6.6e-57 224.2 151 74.8
CAN.G919.41 Capsicum annuum HOM05D005659 ORTHO05D007059 8.6e-57 223.8 142 77.5
PGSC0003DMG400005890 Solanum tuberosum HOM05D005659 ORTHO05D007059 8.6e-57 223.8 142 75.4
Hma1.2p1_2164F.1_g315750 Hydrangea macrophylla HOM05D005659 ORTHO05D007059 1.1e-56 223.4 149 72.5
Sc12g0004680 Simmondsia chinensis HOM05D005659 ORTHO05D007059 1.5e-56 223.0 148 74.3
GSVIVG01036077001 Vitis vinifera HOM05D005659 ORTHO05D007059 1.5e-56 223.0 149 74.5
Nitab4.5_0006903g0010 Nicotiana tabacum HOM05D005659 ORTHO05D007059 2.5e-56 222.2 145 75.9
Solyc06g074200.4 Solanum lycopersicum HOM05D005659 ORTHO05D007059 3.3e-56 221.9 142 73.9
Sopen06g030620 Solanum pennellii HOM05D005659 ORTHO05D007059 3.3e-56 221.9 142 73.9
CsaV3_1G015100 Cucumis sativus L. HOM05D005659 ORTHO05D007059 4.3e-56 221.5 143 75.5
Sed0025059 Sechium edule HOM05D005659 ORTHO05D007059 4.3e-56 221.5 145 77.9
BcaB03g13338 Brassica carinata HOM05D005659 ORTHO05D007059 7.3e-56 220.7 144 72.9
A06p05400 Brassica napus HOM05D005659 ORTHO05D007059 1.2e-55 219.9 144 75.0
BraA06t23749Z Brassica rapa HOM05D005659 ORTHO05D007059 1.2e-55 219.9 144 75.0
Carub.0001s0773 Capsella rubella HOM05D005659 ORTHO05D007059 1.2e-55 219.9 145 71.7
Haze_23342 Corylus avellana HOM05D005659 ORTHO05D007059 1.2e-55 219.9 150 74.0
AT1G08380 Arabidopsis thaliana HOM05D005659 ORTHO05D007059 1.6e-55 219.5 145 71.7
CANSAT54G0546 Cannabis sativa HOM05D005659 ORTHO05D007059 1.6e-55 219.5 146 74.0
Potri.009G160800 Populus trichocarpa HOM05D005659 ORTHO05D007059 1.6e-55 219.5 150 72.7
Cpa.g.sc195.32 Carica papaya HOM05D005659 ORTHO05D007059 2.1e-55 219.2 150 72.7
DCAR_012226 Daucus carota HOM05D005659 ORTHO05D007059 2.1e-55 219.2 151 72.2
Peaxi162Scf00091g00713 Petunia axillaris HOM05D005659 ORTHO05D007059 2.1e-55 219.2 142 73.9
SalBow6G0820 Salvia bowleyana HOM05D005659 ORTHO05D007059 2.1e-55 219.2 144 75.0
CiPaw.14G097600 Carya illinoinensis HOM05D005659 ORTHO05D007059 3.6e-55 218.4 151 72.8
Gohir.D05G082100 Gossypium hirsutum HOM05D005659 ORTHO05D007059 3.6e-55 218.4 146 73.3
CSS0045008 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 4.7e-55 218.0 146 74.7
Gohir.D07G115000 Gossypium hirsutum HOM05D005659 ORTHO05D007059 4.7e-55 218.0 146 74.7
MSTRG.18774 Avicennia marina HOM05D005659 ORTHO05D007059 6.2e-55 217.6 140 75.7
Gorai.001G123200 Gossypium raimondii HOM05D005659 ORTHO05D007059 1.4e-54 216.5 146 74.0
Gorai.009G083700 Gossypium raimondii HOM05D005659 ORTHO05D007059 1.4e-54 216.5 146 72.6
Gohir.A05G079200 Gossypium hirsutum HOM05D005659 ORTHO05D007059 1.8e-54 216.1 146 72.6
CSS0022105 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 2.4e-54 215.7 151 72.2
Oeu002356.1 Olea europaea HOM05D005659 ORTHO05D007059 2.4e-54 215.7 150 70.7
THA.LOC104826438 Tarenaya hassleriana HOM05D005659 ORTHO05D007059 3.1e-54 215.3 145 70.3
VMungo1127G0741 Vigna mungo HOM05D005659 ORTHO05D007059 5.2e-54 214.5 139 77.0
CARHR008270 Cardamine hirsuta HOM05D005659 ORTHO05D007059 6.8e-54 214.2 144 69.4
A08p35240 Brassica napus HOM05D005659 ORTHO05D007059 8.9e-54 213.8 133 75.2
HanXRQChr04g0128561 Helianthus annuus HOM05D005659 ORTHO05D007059 1.2e-53 213.4 142 72.5
Phvul.011G096400 Phaseolus vulgaris HOM05D005659 ORTHO05D007059 1.5e-53 213.0 139 75.5
arahy.Tifrunner.gnm1.ann1.QDSR7W Arachis hypogaea HOM05D005659 ORTHO05D007059 2.0e-53 212.6 143 75.5
Glyma.12G092000 Glycine max HOM05D005659 ORTHO05D007059 4.4e-53 211.5 138 75.4
Manes.04G000900 Manihot esculenta HOM05D005659 ORTHO05D007059 5.8e-53 211.1 152 70.4
Dinv22811 Davidia involucrata HOM05D005659 ORTHO05D007059 7.6e-53 210.7 113 82.3
MBI17_g28186_MAGBIO Magnolia biondii HOM05D005659 ORTHO05D007059 7.6e-53 210.7 142 71.8
arahy.Tifrunner.gnm1.ann1.MVQ7LV Arachis hypogaea HOM05D005659 ORTHO05D007059 1.7e-52 209.5 143 74.1
EL10Ac4g08175 Beta vulgaris HOM05D005659 ORTHO05D007059 3.8e-52 208.4 148 73.0
MD11G1169900 Malus domestica HOM05D005659 ORTHO05D007059 4.9e-52 208.0 144 71.5
Glyma.11G181100 Glycine max HOM05D005659 ORTHO05D007059 1.1e-51 206.8 138 75.4
MELO3C025587.2 Cucumis melo HOM05D005659 ORTHO05D007059 1.9e-51 206.1 173 60.7
MD03G1150500 Malus domestica HOM05D005659 ORTHO05D007059 1.9e-51 206.1 144 70.1
ECA236G2734 Erigeron canadensis HOM05D005659 ORTHO05D007059 2.4e-51 205.7 142 71.8
Prupe.6G137400 Prunus persica HOM05D005659 ORTHO05D007059 4.1e-51 204.9 146 71.2
AL1G18790 Arabidopsis lyrata HOM05D005659 ORTHO05D007059 9.2e-51 203.8 113 80.5
Duzib170G0332 Durio zibethinus HOM05D005659 ORTHO05D007059 9.2e-51 203.8 147 69.4
Lj3g0027363 Lotus japonicus HOM05D005659 ORTHO05D007059 1.2e-50 203.4 147 70.1
BraA08t35432Z Brassica rapa HOM05D005659 ORTHO05D007059 3.5e-50 201.8 133 72.9
unitig_0.g1472 Utricularia gibba HOM05D005659 ORTHO05D007059 6.0e-50 201.1 126 76.2
CDE02G1582 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 7.8e-50 200.7 144 65.3
CDE08G1285 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 1.3e-49 199.9 144 65.3
PSO339G3866 Papaver somniferum HOM05D005659 ORTHO05D007059 1.1e-48 196.8 145 66.2
SGA_v2.0_scaffold7G03995 Striga asiatica HOM05D005659 ORTHO05D007059 1.1e-48 196.8 145 69.0
PSO384G5049 Papaver somniferum HOM05D005659 ORTHO05D007059 2.5e-48 195.7 145 66.2
Migut.D02409 Erythranthe guttata HOM05D005659 ORTHO05D007059 7.3e-48 194.1 113 77.0
RcHm_v2.0_Chr5g0046981 Rosa chinensis HOM05D005659 ORTHO05D007059 9.6e-48 193.7 143 67.1
EL10Ac4g08170 Beta vulgaris HOM05D005659 ORTHO05D007059 1.2e-47 193.4 114 78.9
vmacro14338 Vaccinium macrocarpon HOM05D005659 ORTHO05D007059 2.8e-47 192.2 146 67.1
Aqoxy4G02709 Aquilegia oxysepala HOM05D005659 ORTHO05D007059 3.6e-47 191.8 148 63.5
Ca_26075_v3 Cicer arietinum L. HOM05D005659 ORTHO05D007059 3.6e-47 191.8 147 66.7
FAN11G1786 Fragaria x ananassa HOM05D005659 ORTHO05D007059 4.7e-47 191.4 147 66.0
ATR0579G079 Amborella trichopoda HOM05D005659 ORTHO05D007059 8.1e-47 190.7 145 66.2
TPR.G17220 Trifolium pratense HOM05D005659 ORTHO05D007059 1.1e-46 190.3 146 67.8
Actinidia37070 Actinidia chinensis HOM05D005659 ORTHO05D007059 2.4e-46 189.1 143 67.1
FAN21G2850 Fragaria x ananassa HOM05D005659 ORTHO05D007059 2.4e-46 189.1 147 66.7
FvH4_3g25770 Fragaria vesca HOM05D005659 ORTHO05D007059 4.0e-46 188.3 147 65.3
C08p03620 Brassica napus HOM05D005659 ORTHO05D007059 5.2e-46 188.0 112 76.8
FAN25G1572 Fragaria x ananassa HOM05D005659 ORTHO05D007059 6.9e-46 187.6 147 66.0
Lalb_Chr03g0028281 Lupinus albus HOM05D005659 ORTHO05D007059 6.9e-46 187.6 147 67.3
Psat7g186640 Pisum sativum HOM05D005659 ORTHO05D007059 6.9e-46 187.6 146 65.8
FAN16G1033 Fragaria x ananassa HOM05D005659 ORTHO05D007059 9.0e-46 187.2 147 66.0
Lsat_1_v5_gn_7_85921 Lactuca sativa HOM05D005659 ORTHO05D007059 5.8e-45 184.5 144 66.0
Medtr4g052420 Medicago truncatula HOM05D005659 ORTHO05D007059 9.9e-45 183.7 147 66.0
Actinidia35474 Actinidia chinensis HOM05D005659 ORTHO05D007059 2.9e-44 182.2 143 66.4
Pp3c15_16700 Physcomitrium patens HOM05D005659 ORTHO05D007059 3.2e-43 178.7 145 61.4
HPP92_009876 Vanilla planifolia HOM05D005659 ORTHO05D007059 9.3e-43 177.2 146 62.3
Os04g0414700 Oryza sativa ssp. japonica HOM05D005659 ORTHO05D007059 6.0e-42 174.5 141 63.1
SEGI_08129 Sequoiadendron giganteum HOM05D005659 ORTHO05D007059 1.3e-41 173.3 143 62.2
Zm00001eb083680 Zea mays HOM05D005659 ORTHO05D007059 6.6e-41 171.0 96 78.1
Mapoly0064s0077 Marchantia polymorpha HOM05D005659 ORTHO05D007059 2.5e-40 169.1 147 59.2
Pp3c15_16690 Physcomitrium patens HOM05D005659 ORTHO05D007059 3.6e-39 165.2 145 60.7
ClCG01G011760 Citrullus lanatus HOM05D005659 ORTHO05D007059 4.8e-39 164.9 86 83.7
Nitab4.5_0000937g0110 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.1e-38 163.7 84 84.5
TAR633G2174 Trochodendron aralioides HOM05D005659 ORTHO05D007059 4.0e-38 161.8 119 68.1
Nn2g14238 Nelumbo nucifera HOM05D005659 ORTHO05D007059 9.9e-37 157.1 120 67.5
SMO163G0051 Selaginella moellendorffii HOM05D005659 ORTHO05D007059 1.3e-36 156.8 90 77.8
QL01p011787 Quercus lobata HOM05D005659 ORTHO05D007059 4.9e-36 154.8 116 70.7
AUR62001528 Chenopodium quinoa HOM05D005659 ORTHO05D007059 6.4e-36 154.5 112 71.4
BcaB03g13340 Brassica carinata HOM05D005659 ORTHO05D007059 4.2e-35 151.8 117 63.2
ATR0772G031 Amborella trichopoda HOM05D005659 ORTHO05D007059 1.6e-31 139.8 115 62.6
Rhsim01G0203000 Rhododendron simsii HOM05D005659 ORTHO05D007059 6.9e-30 134.4 120 60.8
Nitab4.5_0005472g0080 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.3e-28 130.2 114 63.2
Hund18778 Selenicereus undatus HOM05D005659 ORTHO05D007059 2.2e-28 129.4 114 61.4
unitig_88.g27645 Utricularia gibba HOM05D005659 ORTHO05D007059 6.4e-28 127.9 120 57.5
Ah.08g223250 Amaranthus hybridus HOM05D005659 ORTHO05D007059 5.5e-27 124.8 113 62.8
Thhalv10009047m.g Eutrema salsugineum HOM05D005659 ORTHO05D007059 1.2e-26 123.6 144 47.9
TAR623G1200 Trochodendron aralioides HOM05D005659 ORTHO05D007059 6.9e-22 107.8 90 63.3
Cre07.g334550 Chlamydomonas reinhardtii HOM05D005659 ORTHO05D007059 2.0e-21 106.3 124 45.2
MCO01G581 Micromonas commoda HOM05D005659 ORTHO05D007059 6.7e-17 91.3 146 39.7
Manes.11G164551 Manihot esculenta HOM05D005659 ORTHO05D007059 1.5e-16 90.1 89 55.1
Peaxi162Scf00345g01024 Petunia axillaris HOM05D005659 ORTHO05D007059 2.0e-13 79.7 158 36.7
Gohir.A07G111250 Gossypium hirsutum HOM05D005659 ORTHO05D007059 6.5e-12 74.7 69 60.9
Nitab4.5_0003068g0060 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.1e-11 73.9 82 53.7
MD11G1234000 Malus domestica HOM05D005659 ORTHO05D007059 2.4e-06 56.2 74 47.3
MD17G1209900 Malus domestica HOM05D005659 ORTHO05D007059 4.1e-06 55.5 74 47.3


User provided reference genes

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