Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 5.3e-100 367.9 209 100.0
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 3.0e-26 122.9 213 46.0
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.1e-25 120.9 181 47.5
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.0e-22 110.2 217 48.8
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 2.6e-22 109.8 217 47.9
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 3.4e-22 109.4 212 46.2
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 5.8e-22 108.6 214 42.5
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 5.8e-22 108.6 217 48.4
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 1.0e-21 107.8 180 45.6
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.3e-21 107.5 217 48.4
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 1.3e-21 107.5 177 48.0
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.7e-21 107.1 217 48.8
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 1.7e-21 107.1 216 41.7
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.2e-21 106.7 228 46.5
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 3.8e-21 105.9 174 46.0
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 1.1e-20 104.4 214 43.5
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.1e-20 104.4 228 46.1
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.4e-20 104.0 175 45.7
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 1.4e-20 104.0 213 43.2
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 1.9e-20 103.6 210 43.8
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 2.5e-20 103.2 218 47.2
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 3.2e-20 102.8 214 41.1
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 3.2e-20 102.8 217 43.3
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 5.5e-20 102.1 216 40.7
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 1.2e-19 100.9 215 46.0
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 2.1e-19 100.1 178 42.7
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 2.7e-19 99.8 210 41.0
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 2.7e-19 99.8 214 39.3
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 4.6e-19 99.0 216 44.9
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 4.6e-19 99.0 178 43.3
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 6.0e-19 98.6 227 46.7
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 1.3e-18 97.4 212 42.5
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.8e-18 97.1 178 46.6
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 5.1e-18 95.5 227 40.1
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 8.7e-18 94.7 225 42.2
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 8.7e-18 94.7 218 39.9
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 8.7e-18 94.7 218 39.9
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 1.5e-17 94.0 211 43.6
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 1.5e-17 94.0 217 40.6
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.5e-17 93.2 217 44.7
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.5e-17 93.2 215 42.8
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 7.4e-17 91.7 208 42.3
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 7.4e-17 91.7 214 42.5
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 9.6e-17 91.3 171 44.4
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 1.6e-16 90.5 216 44.0
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.1e-16 90.1 216 45.4
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 2.8e-16 89.7 218 45.4
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 2.8e-16 89.7 209 43.1
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 3.7e-16 89.4 217 46.5
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 4.8e-16 89.0 222 46.4
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 6.2e-16 88.6 221 43.4
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 6.2e-16 88.6 214 42.1
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 8.2e-16 88.2 180 40.6
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 8.2e-16 88.2 180 43.9
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 8.2e-16 88.2 174 40.8
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 1.4e-15 87.4 214 43.9
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.8e-15 87.0 216 40.7
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.8e-15 87.0 219 41.1
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 2.4e-15 86.7 214 37.9
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 2.4e-15 86.7 174 39.1
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 3.1e-15 86.3 209 47.4
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 5.3e-15 85.5 214 39.3
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 5.3e-15 85.5 221 43.0
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 5.3e-15 85.5 178 41.6
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 6.9e-15 85.1 178 47.8
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 6.9e-15 85.1 181 39.2
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 6.9e-15 85.1 177 41.2
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 9.0e-15 84.7 224 40.2
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.2e-14 84.3 212 41.0
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 1.2e-14 84.3 211 39.8
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 1.2e-14 84.3 178 41.0
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.5e-14 84.0 211 46.4
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.5e-14 84.0 215 38.6
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 2.0e-14 83.6 183 41.0
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 2.6e-14 83.2 174 43.1
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 4.5e-14 82.4 149 49.7
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 5.8e-14 82.0 178 41.6
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 5.8e-14 82.0 178 42.1
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 5.8e-14 82.0 215 37.7
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 1.0e-13 81.3 222 36.0
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 2.2e-13 80.1 180 39.4
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 2.2e-13 80.1 179 38.0
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 2.9e-13 79.7 217 37.3
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 5.0e-13 79.0 215 40.9
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 6.5e-13 78.6 174 39.7
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 1.1e-12 77.8 180 36.1
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 1.1e-12 77.8 143 43.4
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 1.4e-12 77.4 222 42.3
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 4.2e-12 75.9 183 40.4
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 7.1e-12 75.1 212 36.8
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 7.1e-12 75.1 214 36.0
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 9.3e-12 74.7 212 36.8
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 9.3e-12 74.7 212 36.8
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 9.3e-12 74.7 179 39.7
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 1.2e-11 74.3 211 41.7
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 1.2e-11 74.3 176 38.1
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 1.2e-11 74.3 239 35.6
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 1.6e-11 73.9 179 39.7
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 2.1e-11 73.6 215 40.0
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 2.7e-11 73.2 213 37.1
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.7e-11 73.2 215 38.1
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 2.7e-11 73.2 234 34.2
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 3.5e-11 72.8 215 40.0
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 3.5e-11 72.8 148 39.9
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 4.6e-11 72.4 208 41.3
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 1.8e-10 70.5 212 35.8
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 1.8e-10 70.5 212 35.8
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 2.3e-10 70.1 219 38.8
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 2.3e-10 70.1 218 38.5
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 2.3e-10 70.1 196 33.7
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 8.7e-10 68.2 187 36.4
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 1.1e-09 67.8 211 38.4
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 1.5e-09 67.4 215 40.0
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 1.9e-09 67.0 217 36.4
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 3.3e-09 66.2 216 35.2
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 3.3e-09 66.2 216 35.2
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 5.7e-09 65.5 216 35.2
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 5.7e-09 65.5 216 45.4
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 7.4e-09 65.1 210 36.2
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 9.7e-09 64.7 181 39.2
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 9.7e-09 64.7 216 35.2
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.3e-08 64.3 137 38.0
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.6e-08 63.9 205 40.0
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 1.6e-08 63.9 124 39.5
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 2.2e-08 63.5 176 37.5
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 2.8e-08 63.2 180 37.8
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 4.8e-08 62.4 178 34.3
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 6.3e-08 62.0 216 35.6
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 8.2e-08 61.6 107 43.9
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 1.8e-07 60.5 101 43.6
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 2.4e-07 60.1 101 45.5
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 2.4e-07 60.1 216 36.1
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 2.4e-07 60.1 172 36.0
HPP92_024624 Vanilla planifolia HOM05D003644 ORTHO05D004305 2.4e-07 60.1 172 33.7
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 4.1e-07 59.3 173 30.6
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 5.3e-07 58.9 218 35.8
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 6.9e-07 58.5 83 47.0
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 6.9e-07 58.5 209 34.0
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 9.0e-07 58.2 218 35.8
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 2.0e-06 57.0 184 32.6
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 2.0e-06 57.0 114 50.0
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 2.0e-06 57.0 98 42.9
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 3.4e-06 56.2 170 38.2
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 3.4e-06 56.2 178 37.6
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 4.5e-06 55.8 62 62.9
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 5.9e-06 55.5 64 64.1
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 5.9e-06 55.5 184 30.4
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 5.9e-06 55.5 64 64.1
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 1.0e-05 54.7 64 59.4
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 1.0e-05 54.7 143 42.7


User provided reference genes

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