Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR084G0009 Punica granatum HOM05D006839 ORTHO05D007872 5.6e-77 290.8 140 100.0
PGR142G2474 Punica granatum HOM05D006839 ORTHO05D007872 5.6e-77 290.8 140 100.0
Eucgr.H01539 Eucalyptus grandis HOM05D006839 ORTHO05D007872 1.3e-17 93.6 111 43.2
Ciclev10023291m.g Citrus clementina HOM05D006839 ORTHO05D007872 2.5e-16 89.4 113 36.3
Hma1.2p1_0257F.1_g103610 Hydrangea macrophylla HOM05D000265 ORTHO05D007872 3.2e-16 89.0 107 39.3
Duzib211G0653 Durio zibethinus HOM05D006839 ORTHO05D007872 7.1e-16 87.8 110 36.4
PGR119G1259 Punica granatum HOM05D006839 ORTHO05D007872 1.2e-15 87.0 110 39.1
Haze_04725 Corylus avellana HOM05D006839 ORTHO05D007872 2.1e-15 86.3 112 34.8
Gohir.D11G127300 Gossypium hirsutum HOM05D006839 ORTHO05D007872 2.7e-15 85.9 110 35.5
Gohir.D11G127350 Gossypium hirsutum HOM05D006839 ORTHO05D007872 2.7e-15 85.9 110 35.5
Atru.chr5.1418 Acer truncatum HOM05D006839 ORTHO05D007872 3.5e-15 85.5 141 34.0
Gohir.A11G122100 Gossypium hirsutum HOM05D006839 ORTHO05D007872 3.5e-15 85.5 110 35.5
Gorai.007G136000 Gossypium raimondii HOM05D006839 ORTHO05D007872 3.5e-15 85.5 110 36.4
SalBow6G6528 Salvia bowleyana HOM05D006839 ORTHO05D007872 3.5e-15 85.5 107 38.3
MBI19_g14316_MAGBIO Magnolia biondii HOM05D006839 ORTHO05D007872 6.0e-15 84.7 109 34.9
MBI19_g46647_MAGBIO Magnolia biondii HOM05D006839 ORTHO05D007872 6.0e-15 84.7 109 34.9
PGR119G0017 Punica granatum HOM05D006839 ORTHO05D007872 7.9e-15 84.3 107 37.4
FvH4_2g23730 Fragaria vesca HOM05D006839 ORTHO05D007872 1.0e-14 84.0 112 34.8
Oeu022880.1 Olea europaea HOM05D006839 ORTHO05D007872 1.3e-14 83.6 131 31.3
vmacro14927 Vaccinium macrocarpon HOM05D000265 ORTHO05D000161 1.3e-14 83.6 107 36.4
CSS0014698 Camellia sinensis var. sinensis HOM05D006839 ORTHO05D007872 3.0e-14 82.4 141 31.9
CSS0016717 Camellia sinensis var. sinensis HOM05D006839 ORTHO05D007872 3.0e-14 82.4 141 31.9
Solyc09g065040.1 Solanum lycopersicum HOM05D006839 ORTHO05D007872 3.9e-14 82.0 120 32.5
FAN24G3533 Fragaria x ananassa HOM05D006839 ORTHO05D007872 6.7e-14 81.3 112 33.9
Cpa.g.sc52.24 Carica papaya HOM05D006839 ORTHO05D007872 8.7e-14 80.9 110 33.6
Migut.N02163 Erythranthe guttata HOM05D006839 ORTHO05D007872 8.7e-14 80.9 106 37.7
RcHm_v2.0_Chr6g0291211 Rosa chinensis HOM05D006839 ORTHO05D007872 8.7e-14 80.9 112 33.9
Sopen09g026780 Solanum pennellii HOM05D006839 ORTHO05D007872 8.7e-14 80.9 120 32.5
Zm00001eb305770 Zea mays HOM05D006839 ORTHO05D007872 8.7e-14 80.9 135 31.1
COL.COLO4_09110 Corchorus olitorius HOM05D006839 ORTHO05D007872 1.1e-13 80.5 115 33.0
Potri.005G208400 Populus trichocarpa HOM05D006839 ORTHO05D007872 1.1e-13 80.5 110 33.6
SalBow4G2140 Salvia bowleyana HOM05D006839 ORTHO05D007872 1.1e-13 80.5 135 31.9
Glyma.19G155100 Glycine max HOM05D006839 ORTHO05D007872 1.5e-13 80.1 132 34.1
ECA248G0593 Erigeron canadensis HOM05D006839 ORTHO05D007872 1.9e-13 79.7 113 33.6
PGR142G4476 Punica granatum HOM05D006839 ORTHO05D007872 1.9e-13 79.7 116 37.1
Aqoxy2G03292 Aquilegia oxysepala HOM05D006839 ORTHO05D007872 2.5e-13 79.3 135 31.9
Manes.05G075300 Manihot esculenta HOM05D006839 ORTHO05D007872 2.5e-13 79.3 110 34.5
Eucgr.L02237 Eucalyptus grandis HOM05D006839 ORTHO05D007872 4.3e-13 78.6 112 35.7
Nitab4.5_0001028g0040 Nicotiana tabacum HOM05D006839 ORTHO05D007872 4.3e-13 78.6 138 29.7
Lsat_1_v5_gn_5_190060 Lactuca sativa HOM05D006839 ORTHO05D007872 5.7e-13 78.2 138 31.9
TAR636G2925 Trochodendron aralioides HOM05D006839 ORTHO05D007872 5.7e-13 78.2 138 32.6
MELO3C014411.2 Cucumis melo HOM05D006839 ORTHO05D007872 7.4e-13 77.8 112 32.1
MD11G1287200 Malus domestica HOM05D006839 ORTHO05D007872 7.4e-13 77.8 141 31.9
PGR031G3557 Punica granatum HOM05D023640 ORTHO05D019592 7.4e-13 77.8 135 35.6
Eucgr.K03376 Eucalyptus grandis HOM05D006839 ORTHO05D007872 9.6e-13 77.4 108 34.3
Nn1g02187 Nelumbo nucifera HOM05D006839 ORTHO05D007872 9.6e-13 77.4 101 36.6
Sed0018644 Sechium edule HOM05D006839 ORTHO05D007872 9.6e-13 77.4 114 32.5
PGSC0003DMG400039700 Solanum tuberosum HOM05D006839 ORTHO05D007872 9.6e-13 77.4 137 29.9
PGSC0003DMG402026866 Solanum tuberosum HOM05D006839 ORTHO05D007872 9.6e-13 77.4 137 29.9
SalBow7G1292 Salvia bowleyana HOM05D006839 ORTHO05D007872 1.6e-12 76.6 133 30.1
Glyma.02G148000 Glycine max HOM05D006839 ORTHO05D007872 2.1e-12 76.3 107 35.5
CsaV3_6G037040 Cucumis sativus L. HOM05D006839 ORTHO05D007872 2.8e-12 75.9 112 31.2
Migut.D00285 Erythranthe guttata HOM05D006839 ORTHO05D007872 2.8e-12 75.9 131 34.4
Nitab4.5_0007089g0020 Nicotiana tabacum HOM05D006839 ORTHO05D007872 2.8e-12 75.9 139 29.5
CiPaw.08G104600 Carya illinoinensis HOM05D006839 ORTHO05D007872 3.7e-12 75.5 109 32.1
Migut.N02162 Erythranthe guttata HOM05D006839 ORTHO05D007872 3.7e-12 75.5 108 32.4
Glyma.10G025800 Glycine max HOM05D006839 ORTHO05D007872 4.8e-12 75.1 107 34.6
Prupe.8G242500 Prunus persica HOM05D006839 ORTHO05D007872 4.8e-12 75.1 107 31.8
VMungo0720G2173 Vigna mungo HOM05D006839 ORTHO05D007872 4.8e-12 75.1 106 34.9
AagrBONN_evm.TU.Sc2ySwM_368.904 Anthoceros agrestis HOM05D032606 ORTHO05D007872 8.2e-12 74.3 109 40.4
CAN.G619.39 Capsicum annuum HOM05D006839 ORTHO05D007872 8.2e-12 74.3 107 32.7
CAN.G619.36 Capsicum annuum HOM05D006839 ORTHO05D007872 1.1e-11 73.9 117 31.6
Lj1g0018770 Lotus japonicus HOM05D006839 ORTHO05D007872 1.1e-11 73.9 129 31.8
Solyc04g026140.1 Solanum lycopersicum HOM05D006839 ORTHO05D007872 1.1e-11 73.9 108 34.3
PGSC0003DMG400041475 Solanum tuberosum HOM05D006839 ORTHO05D007872 1.1e-11 73.9 105 33.3
TWI14G1288 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 1.1e-11 73.9 107 34.6
PGSC0003DMG400046937 Solanum tuberosum HOM05D006839 ORTHO05D007872 1.4e-11 73.6 107 32.7
TWI59G1109 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 1.4e-11 73.6 136 30.9
VMungo1383G1584 Vigna mungo HOM05D006839 ORTHO05D007872 1.4e-11 73.6 126 30.2
Phvul.001G150100 Phaseolus vulgaris HOM05D006839 ORTHO05D007872 1.8e-11 73.2 126 30.2
Phvul.007G171000 Phaseolus vulgaris HOM05D006839 ORTHO05D007872 1.8e-11 73.2 106 34.0
PGR031G2486 Punica granatum HOM05D023640 ORTHO05D019592 2.4e-11 72.8 115 40.9
Eucgr.A00826 Eucalyptus grandis HOM05D006839 ORTHO05D007872 3.1e-11 72.4 142 33.8
SalBow6G4286 Salvia bowleyana HOM05D006839 ORTHO05D007872 3.1e-11 72.4 107 33.6
PGSC0003DMG400045936 Solanum tuberosum HOM05D006839 ORTHO05D007872 3.1e-11 72.4 107 31.8
AagrBONN_evm.TU.Sc2ySwM_344.1627 Anthoceros agrestis HOM05D032606 ORTHO05D007872 5.3e-11 71.6 110 37.3
PGR031G1999 Punica granatum HOM05D006839 ORTHO05D007872 5.3e-11 71.6 113 37.2
SalBow6G2151 Salvia bowleyana HOM05D006839 ORTHO05D007872 5.3e-11 71.6 106 34.0
Cc01_g19590 Coffea canephora HOM05D006839 ORTHO05D007872 6.9e-11 71.2 134 29.9
Actinidia24884 Actinidia chinensis HOM05D006839 ORTHO05D007872 9.0e-11 70.9 101 32.7
Cfa006129 Carpinus fangiana HOM05D006839 ORTHO05D007872 1.2e-10 70.5 128 28.1
PGR005G0005 Punica granatum HOM05D023640 ORTHO05D019592 1.2e-10 70.5 135 35.6
TWI73G0617 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 2.0e-10 69.7 108 38.0
SEGI_06174 Sequoiadendron giganteum HOM05D006839 ORTHO05D007872 2.6e-10 69.3 143 28.0
Thecc.01G280800 Theobroma cacao HOM05D006839 ORTHO05D007872 2.6e-10 69.3 100 33.0
HPP92_001336 Vanilla planifolia HOM05D006839 ORTHO05D007872 2.6e-10 69.3 131 27.5
PGR142G2171 Punica granatum HOM05D023640 ORTHO05D019592 3.4e-10 68.9 135 34.8
AagrBONN_evm.TU.Sc2ySwM_344.1662 Anthoceros agrestis HOM05D032874 ORTHO05D007872 4.5e-10 68.6 106 34.9
Eucgr.L02238 Eucalyptus grandis HOM05D006839 ORTHO05D007872 4.5e-10 68.6 112 33.0
Eucgr.H00898 Eucalyptus grandis HOM05D006839 ORTHO05D007872 5.9e-10 68.2 88 38.6
QL12p022082 Quercus lobata HOM05D006839 ORTHO05D007872 5.9e-10 68.2 127 28.3
CAN.G619.35 Capsicum annuum HOM05D006839 ORTHO05D007872 7.6e-10 67.8 104 33.7
PGR083G1544 Punica granatum HOM05D006839 ORTHO05D007872 7.6e-10 67.8 109 34.9
SalBow6G5378 Salvia bowleyana HOM05D006839 ORTHO05D007872 7.6e-10 67.8 107 32.7
Peaxi162Scf00681g00007 Petunia axillaris HOM05D006839 ORTHO05D007872 1.0e-09 67.4 103 35.0
SalBow6G6538 Salvia bowleyana HOM05D006839 ORTHO05D007872 1.0e-09 67.4 107 30.8
Sabra05G0158500 Salix brachista HOM05D006839 ORTHO05D007872 1.7e-09 66.6 103 32.0
Glyma.03G152600 Glycine max HOM05D006839 ORTHO05D007872 2.2e-09 66.2 132 30.3
PGR031G1100 Punica granatum HOM05D023640 ORTHO05D007872 3.8e-09 65.5 130 33.1
SalBow6G0334 Salvia bowleyana HOM05D006839 ORTHO05D007872 3.8e-09 65.5 108 31.5
Eucgr.J01400 Eucalyptus grandis HOM05D006839 ORTHO05D007872 5.0e-09 65.1 102 33.3
AagrBONN_evm.TU.Sc2ySwM_344.1661 Anthoceros agrestis HOM05D058811 ORTHO05D019592 1.1e-08 63.9 105 34.3
AagrBONN_evm.TU.Sc2ySwM_344.1663 Anthoceros agrestis HOM05D006839 ORTHO05D007872 1.1e-08 63.9 113 33.6
PGR083G0613 Punica granatum HOM05D006839 ORTHO05D007872 2.5e-08 62.8 138 34.1
ATR0626G183 Amborella trichopoda HOM05D006839 ORTHO05D007872 3.2e-08 62.4 111 28.8
Nitab4.5_0006691g0070 Nicotiana tabacum HOM05D006839 ORTHO05D007872 7.2e-08 61.2 70 41.4
Nitab4.5_0009973g0050 Nicotiana tabacum HOM05D006839 ORTHO05D007872 7.2e-08 61.2 70 41.4
MSTRG.2139 Avicennia marina HOM05D000655 ORTHO05D001166 1.2e-07 60.5 118 31.4
Haze_10903 Corylus avellana HOM05D000655 ORTHO05D001166 1.6e-07 60.1 118 33.9
Haze_10908 Corylus avellana HOM05D000655 ORTHO05D001166 1.6e-07 60.1 118 33.9
Gohir.D04G185600 Gossypium hirsutum HOM05D000655 ORTHO05D001166 2.7e-07 59.3 117 31.6
Nitab4.5_0006691g0050 Nicotiana tabacum HOM05D006839 ORTHO05D007872 2.7e-07 59.3 102 28.4
vmacro13428 Vaccinium macrocarpon HOM05D000655 ORTHO05D001166 2.7e-07 59.3 136 29.4
Gohir.A04G142300 Gossypium hirsutum HOM05D000655 ORTHO05D001166 3.6e-07 58.9 117 31.6
arahy.Tifrunner.gnm1.ann1.ERW5M8 Arachis hypogaea HOM05D000655 ORTHO05D001635 4.6e-07 58.5 112 32.1
Oeu062646.1 Olea europaea HOM05D000655 ORTHO05D001166 4.6e-07 58.5 115 28.7
Lalb_Chr01g0019521 Lupinus albus HOM05D000655 ORTHO05D001635 6.1e-07 58.2 104 31.7
SMO196G0144 Selaginella moellendorffii HOM05D000655 ORTHO05D001166 6.1e-07 58.2 96 30.2
VMungo0251G1677 Vigna mungo HOM05D001822 ORTHO05D001744 6.1e-07 58.2 114 29.8
unitig_27.g25157 Utricularia gibba HOM05D000655 ORTHO05D001166 1.3e-06 57.0 97 32.0
Migut.H00718 Erythranthe guttata HOM05D000022 ORTHO05D000306 1.8e-06 56.6 105 34.3
Gorai.004G163200 Gossypium raimondii HOM05D000655 ORTHO05D001166 1.8e-06 56.6 103 31.1
Phvul.002G319900 Phaseolus vulgaris HOM05D000655 ORTHO05D001166 1.8e-06 56.6 115 29.6
Ca_17287_v3 Cicer arietinum L. HOM05D000655 ORTHO05D001166 2.3e-06 56.2 99 33.3
Eucgr.E01472 Eucalyptus grandis HOM05D000655 ORTHO05D001166 2.3e-06 56.2 111 28.8
Gorai.012G181900 Gossypium raimondii HOM05D000655 ORTHO05D001166 2.3e-06 56.2 99 32.3
EL10Ac9g21203 Beta vulgaris HOM05D000022 ORTHO05D000071 3.0e-06 55.8 100 33.0
Glyma.08G042600 Glycine max HOM05D000655 ORTHO05D001166 3.0e-06 55.8 110 30.9
Nitab4.5_0000845g0120 Nicotiana tabacum HOM05D000655 ORTHO05D001635 3.0e-06 55.8 105 37.1
Nitab4.5_0007231g0010 Nicotiana tabacum HOM05D000655 ORTHO05D001635 3.0e-06 55.8 105 38.1
SMO364G0778 Selaginella moellendorffii HOM05D006839 ORTHO05D007872 3.0e-06 55.8 108 30.6
AagrBONN_evm.TU.Sc2ySwM_344.2479 Anthoceros agrestis HOM05D006839 ORTHO05D007872 3.9e-06 55.5 107 29.0
Gohir.A08G136100 Gossypium hirsutum HOM05D000655 ORTHO05D001166 3.9e-06 55.5 103 30.1
Nn3g18340 Nelumbo nucifera HOM05D000655 ORTHO05D001166 3.9e-06 55.5 99 30.3
QL03p035062 Quercus lobata HOM05D000655 ORTHO05D001166 3.9e-06 55.5 101 32.7
CSS0035865 Camellia sinensis var. sinensis HOM05D000655 ORTHO05D001166 5.1e-06 55.1 117 28.2
Rhsim09G0091600 Rhododendron simsii HOM05D000655 ORTHO05D001166 5.1e-06 55.1 101 31.7
MELO3C022487.2 Cucumis melo HOM05D000655 ORTHO05D001166 6.7e-06 54.7 105 30.5
Glyma.05G235200 Glycine max HOM05D000655 ORTHO05D001166 6.7e-06 54.7 110 30.0
Prupe.1G331900 Prunus persica HOM05D000655 ORTHO05D001166 6.7e-06 54.7 116 29.3
Ca_08728_v3 Cicer arietinum L. HOM05D000655 ORTHO05D001635 8.7e-06 54.3 110 30.9
Ca_08737_v3 Cicer arietinum L. HOM05D000655 ORTHO05D001635 8.7e-06 54.3 110 30.9
Gohir.D02G141300 Gossypium hirsutum HOM05D000655 ORTHO05D001166 8.7e-06 54.3 116 31.0
Gohir.D08G156900 Gossypium hirsutum HOM05D000655 ORTHO05D001166 8.7e-06 54.3 103 30.1
HanXRQChr10g0280651 Helianthus annuus HOM05D000655 ORTHO05D001635 8.7e-06 54.3 105 32.4
MD13G1029600 Malus domestica HOM05D000655 ORTHO05D001166 8.7e-06 54.3 119 29.4
RhsimUnG0222100 Rhododendron simsii HOM05D000655 ORTHO05D001166 8.7e-06 54.3 117 29.1


User provided reference genes

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