Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR084G0002 Punica granatum HOM05D004960 ORTHO05D004696 5.3e-168 594.3 317 100.0
PGR142G0218 Punica granatum HOM05D004960 ORTHO05D004696 5.3e-168 594.3 317 100.0
Eucgr.C00202 Eucalyptus grandis HOM05D004960 ORTHO05D004696 6.3e-60 235.3 315 47.0
COL.COLO4_16060 Corchorus olitorius HOM05D004960 ORTHO05D004696 4.1e-59 232.6 312 44.2
Thecc.09G162700 Theobroma cacao HOM05D004960 ORTHO05D004696 1.2e-58 231.1 306 44.4
Ciclev10008947m.g Citrus clementina HOM05D004960 ORTHO05D004696 4.2e-48 196.1 309 38.5
Ciclev10008957m.g Citrus clementina HOM05D004960 ORTHO05D004696 4.7e-47 192.6 307 38.8
TWI63G1126 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 1.4e-46 191.0 297 38.7
Cfa013540 Carpinus fangiana HOM05D004960 ORTHO05D004696 3.3e-45 186.4 302 39.7
Atru.chr7.532 Acer truncatum HOM05D004960 ORTHO05D004696 3.7e-44 183.0 315 38.4
RcHm_v2.0_Chr4g0404711 Rosa chinensis HOM05D004960 ORTHO05D004696 8.2e-44 181.8 318 36.8
QL02p095902 Quercus lobata HOM05D004960 ORTHO05D004696 3.1e-43 179.9 312 37.2
TWI32G0132 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 3.1e-43 179.9 315 38.7
Thecc.09G163000 Theobroma cacao HOM05D004960 ORTHO05D004696 4.1e-43 179.5 241 43.2
Prupe.1G095900 Prunus persica HOM05D004960 ORTHO05D004696 1.6e-42 177.6 315 38.4
RcHm_v2.0_Chr4g0404721 Rosa chinensis HOM05D004960 ORTHO05D004696 4.5e-42 176.0 311 37.6
THA.LOC104803513 Tarenaya hassleriana HOM05D004960 ORTHO05D004696 5.5e-40 169.1 298 37.2
Haze_10109 Corylus avellana HOM05D004960 ORTHO05D004696 2.7e-39 166.8 302 35.8
Dinv41300 Davidia involucrata HOM05D004960 ORTHO05D004696 8.8e-38 161.8 312 38.5
Manes.14G147200 Manihot esculenta HOM05D004960 ORTHO05D004696 4.4e-37 159.5 321 38.3
Cc06_g13870 Coffea canephora HOM05D004960 ORTHO05D004696 7.5e-37 158.7 323 34.7
MD16G1263500 Malus domestica HOM05D004960 ORTHO05D004696 2.2e-36 157.1 317 36.3
Duzib168G0188 Durio zibethinus HOM05D004960 ORTHO05D004696 6.3e-36 155.6 306 36.6
CSS0015847 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 9.1e-35 151.8 317 34.1
TWI34G0908 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 4.5e-34 149.4 243 39.1
Cpa.g.c29666.2 Carica papaya HOM05D004960 ORTHO05D004696 1.0e-33 148.3 301 34.6
Dinv41299 Davidia involucrata HOM05D004960 ORTHO05D004696 1.9e-32 144.1 320 35.3
Sp3g32170 Schrenkiella parvula HOM05D004960 ORTHO05D004696 3.2e-32 143.3 294 34.4
BcaB07g31648 Brassica carinata HOM05D004960 ORTHO05D004696 4.2e-32 142.9 310 34.5
A09p12040 Brassica napus HOM05D004960 ORTHO05D004696 3.6e-31 139.8 310 34.5
BraA09t36847Z Brassica rapa HOM05D004960 ORTHO05D004696 3.6e-31 139.8 310 34.5
BolC9t54315H Brassica oleracea HOM05D004960 ORTHO05D004696 4.7e-31 139.4 310 34.5
Actinidia38650 Actinidia chinensis HOM05D004960 ORTHO05D004696 8.0e-31 138.7 317 32.2
BcaC04g22889 Brassica carinata HOM05D004960 ORTHO05D004696 8.0e-31 138.7 310 34.5
C09p14170 Brassica napus HOM05D004960 ORTHO05D004696 8.0e-31 138.7 310 34.5
Hma1.2p1_0921F.1_g236760 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 2.0e-29 134.0 320 34.1
Hma1.2p1_0921F.1_g236792 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 2.0e-29 134.0 320 34.1
BcaC04g21483 Brassica carinata HOM05D004960 ORTHO05D004696 3.4e-29 133.3 322 31.7
C09p31280 Brassica napus HOM05D004960 ORTHO05D004696 3.4e-29 133.3 322 31.7
BraA07t27990Z Brassica rapa HOM05D004960 ORTHO05D004696 5.7e-29 132.5 322 32.0
Dinv43330 Davidia involucrata HOM05D004960 ORTHO05D004696 1.7e-28 131.0 268 35.4
Thhalv10022778m.g Eutrema salsugineum HOM05D004960 ORTHO05D004696 1.7e-28 131.0 313 32.9
AT2G18680 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 2.2e-28 130.6 290 32.1
BolC9t55984H Brassica oleracea HOM05D004960 ORTHO05D004696 2.2e-28 130.6 322 32.0
Carub.0003s3294 Capsella rubella HOM05D004960 ORTHO05D004696 2.2e-28 130.6 295 33.6
Hma1.2p1_0921F.1_g236770 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 2.2e-28 130.6 301 34.6
Hma1.2p1_0921F.1_g236794 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 2.2e-28 130.6 301 34.6
BcaB03g16662 Brassica carinata HOM05D004960 ORTHO05D004696 2.8e-28 130.2 320 31.6
Prupe.1G095700 Prunus persica HOM05D004960 ORTHO05D004696 2.8e-28 130.2 322 34.2
Lsat_1_v5_gn_8_65701 Lactuca sativa HOM05D004960 ORTHO05D004696 6.3e-28 129.0 316 30.7
A07p01900 Brassica napus HOM05D004960 ORTHO05D004696 8.3e-28 128.6 294 32.3
Oeu024903.1 Olea europaea HOM05D004960 ORTHO05D004696 8.3e-28 128.6 306 33.0
C04p38300 Brassica napus HOM05D004960 ORTHO05D004696 3.1e-27 126.7 321 31.2
Rhsim01G0010200 Rhododendron simsii HOM05D004960 ORTHO05D004696 3.1e-27 126.7 310 33.9
C07p04050 Brassica napus HOM05D004960 ORTHO05D004696 2.7e-26 123.6 278 31.7
AL3G52080 Arabidopsis lyrata HOM05D004960 ORTHO05D004696 3.5e-26 123.2 310 31.0
AT2G18690 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 7.7e-26 122.1 307 31.9
BraA04t16256Z Brassica rapa HOM05D004960 ORTHO05D004696 7.7e-26 122.1 321 30.2
Atru.chr12.164 Acer truncatum HOM05D004960 ORTHO05D004696 1.0e-25 121.7 212 40.1
BolC7t40796H Brassica oleracea HOM05D004960 ORTHO05D004696 1.7e-25 120.9 256 32.8
Migut.J01407 Erythranthe guttata HOM05D004960 ORTHO05D004696 6.5e-25 119.0 323 31.9
TAR625G0177 Trochodendron aralioides HOM05D004960 ORTHO05D004696 6.5e-25 119.0 309 31.7
Carub.0003s3296 Capsella rubella HOM05D004960 ORTHO05D004696 8.6e-25 118.6 322 29.2
A06p33120 Brassica napus HOM05D004960 ORTHO05D004696 2.5e-24 117.1 319 31.0
C03p59340 Brassica napus HOM05D004960 ORTHO05D004696 3.2e-24 116.7 320 33.4
Oeu037992.1 Olea europaea HOM05D004960 ORTHO05D004696 3.2e-24 116.7 334 29.6
Cpa.g.sc75.10 Carica papaya HOM05D004960 ORTHO05D004696 7.2e-24 115.5 262 32.8
BraA06t26242Z Brassica rapa HOM05D004960 ORTHO05D004696 1.6e-23 114.4 320 30.9
SGA_v2.0_scaffold69G23316 Striga asiatica HOM05D004960 ORTHO05D004696 1.6e-23 114.4 312 30.8
Actinidia35989 Actinidia chinensis HOM05D004960 ORTHO05D004696 2.8e-23 113.6 314 32.2
CARHR109270 Cardamine hirsuta HOM05D004960 ORTHO05D004696 6.1e-23 112.5 323 28.2
Lsat_1_v5_gn_7_52700 Lactuca sativa HOM05D004960 ORTHO05D004696 1.4e-22 111.3 322 29.5
MBI14_g30694_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.8e-22 110.9 313 32.6
BcaC01g02853 Brassica carinata HOM05D004960 ORTHO05D004696 2.3e-22 110.5 327 32.4
BolC3t18198H Brassica oleracea HOM05D004960 ORTHO05D004696 2.3e-22 110.5 327 32.4
Nn2g12577 Nelumbo nucifera HOM05D004960 ORTHO05D004696 2.3e-22 110.5 318 33.0
Migut.J01430 Erythranthe guttata HOM05D004960 ORTHO05D004696 5.2e-22 109.4 320 32.2
A04p05570 Brassica napus HOM05D004960 ORTHO05D004696 6.8e-22 109.0 321 29.6
BcaC02g09087 Brassica carinata HOM05D004960 ORTHO05D004696 1.2e-21 108.2 321 29.9
Oeu043380.1 Olea europaea HOM05D004960 ORTHO05D004696 2.6e-21 107.1 326 29.8
Cc06_g13860 Coffea canephora HOM05D004960 ORTHO05D004696 4.4e-21 106.3 310 31.9
Rhsim01G0010300 Rhododendron simsii HOM05D004960 ORTHO05D004696 4.4e-21 106.3 318 28.9
BcaB08g34825 Brassica carinata HOM05D004960 ORTHO05D004696 3.7e-20 103.2 323 30.7
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.7e-20 103.2 307 31.9
ECA240G0411 Erigeron canadensis HOM05D004960 ORTHO05D004696 6.3e-20 102.4 305 29.5
MBI14_g30692_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 6.3e-20 102.4 294 29.9
CSS0034998 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.1e-19 101.7 326 30.1
Aqoxy7G03208 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 3.1e-19 100.1 298 27.5
Nn8g40270 Nelumbo nucifera HOM05D004960 ORTHO05D004696 5.4e-19 99.4 303 33.3
HanXRQChr03g0068481 Helianthus annuus HOM05D004960 ORTHO05D004696 7.0e-19 99.0 321 28.7
MBI14_g30701_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.2e-18 98.2 277 29.2
PGSC0003DMG400034810 Solanum tuberosum HOM05D004960 ORTHO05D004696 1.2e-18 98.2 266 31.2
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.7e-18 97.1 318 30.2
Dinv42772 Davidia involucrata HOM05D004960 ORTHO05D004696 5.9e-18 95.9 200 36.5
Solyc07g006420.1 Solanum lycopersicum HOM05D004960 ORTHO05D004696 2.3e-17 94.0 305 27.9
MBI14_g30696_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 8.6e-17 92.0 291 30.2
Prupe.1G095800 Prunus persica HOM05D004960 ORTHO05D004696 1.5e-16 91.3 130 43.1
CSS0018327 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 2.5e-16 90.5 334 29.3
CSS0049948 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.0e-14 85.1 328 29.6
TAR383G0876 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.8e-14 84.3 313 29.4
ATR0580G174 Amborella trichopoda HOM05D004960 ORTHO05D004696 2.3e-14 84.0 297 28.3
TAR383G0345 Trochodendron aralioides HOM05D004960 ORTHO05D004696 4.0e-14 83.2 308 29.5
Migut.J01428 Erythranthe guttata HOM05D015143 ORTHO05D004696 6.8e-14 82.4 315 29.2
HanXRQChr03g0068521 Helianthus annuus HOM05D004960 ORTHO05D004696 1.2e-13 81.6 271 28.4
SalBow6G0476 Salvia bowleyana HOM05D004960 ORTHO05D004696 1.2e-13 81.6 322 27.3
ATR0580G065 Amborella trichopoda HOM05D004960 ORTHO05D004696 1.5e-13 81.3 313 26.8
Aqoxy7G03205 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 1.5e-13 81.3 319 27.9
Aqoxy7G03204 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 2.6e-13 80.5 314 26.1
MBI14_g30695_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 4.4e-13 79.7 294 29.9
TAR383G0614 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.7e-12 77.8 306 29.1
COL.COLO4_16058 Corchorus olitorius HOM05D007179 ORTHO05D009124 2.9e-12 77.0 304 31.6
HanXRQChr03g0074111 Helianthus annuus HOM05D012567 ORTHO05D004696 2.9e-12 77.0 297 29.0
HanXRQChr03g0074151 Helianthus annuus HOM05D012567 ORTHO05D004696 2.9e-12 77.0 297 29.0
Migut.J01431 Erythranthe guttata HOM05D015143 ORTHO05D004696 8.3e-12 75.5 238 29.8
Lsat_1_v5_gn_7_52621 Lactuca sativa HOM05D012567 ORTHO05D004696 8.3e-12 75.5 303 27.1
Oeu037995.1 Olea europaea HOM05D004960 ORTHO05D004696 8.3e-12 75.5 212 29.7
Carub.0003s3295 Capsella rubella HOM05D004960 ORTHO05D004696 1.4e-11 74.7 271 29.2
Migut.K00271 Erythranthe guttata HOM05D004960 ORTHO05D004696 2.4e-11 73.9 333 27.9
HanXRQChr03g0074171 Helianthus annuus HOM05D012567 ORTHO05D004696 4.1e-11 73.2 297 27.9
Carub.0003s2660 Capsella rubella HOM05D004960 ORTHO05D004696 9.2e-11 72.0 290 27.2
Migut.J01429 Erythranthe guttata HOM05D015143 ORTHO05D004696 3.5e-10 70.1 298 29.5
Lsat_1_v5_gn_7_52640 Lactuca sativa HOM05D012567 ORTHO05D004696 1.0e-09 68.6 299 28.8
Migut.J01427 Erythranthe guttata HOM05D015143 ORTHO05D004696 1.3e-09 68.2 318 28.3
COL.COLO4_35751 Corchorus olitorius HOM05D001062 ORTHO05D000884 2.3e-09 67.4 318 27.4
RcHm_v2.0_Chr4g0404701 Rosa chinensis HOM05D004960 ORTHO05D004696 3.0e-09 67.0 148 36.5
Lsat_1_v5_gn_7_52661 Lactuca sativa HOM05D012567 ORTHO05D004696 3.9e-09 66.6 300 28.7
TAR626G1398 Trochodendron aralioides HOM05D004960 ORTHO05D004696 6.6e-09 65.9 239 26.8
Migut.K00270 Erythranthe guttata HOM05D004960 ORTHO05D004696 8.6e-09 65.5 303 28.1
SalBow6G1594 Salvia bowleyana HOM05D004960 ORTHO05D004696 1.1e-08 65.1 246 28.0
Nn1g04315 Nelumbo nucifera HOM05D004960 ORTHO05D004696 3.3e-08 63.5 238 29.0
CDE04G1275 Ceratophyllum demersum HOM05D000122 ORTHO05D000139 4.3e-08 63.2 299 23.4
ECA240G1251 Erigeron canadensis HOM05D012567 ORTHO05D004696 9.5e-08 62.0 209 27.3
BolC4t25405H Brassica oleracea HOM05D004960 ORTHO05D004696 1.2e-07 61.6 154 31.2
Potri.010G250300 Populus trichocarpa HOM05D004960 ORTHO05D004696 2.1e-07 60.8 312 28.2
HPP92_010759 Vanilla planifolia HOM05D004960 ORTHO05D004696 2.1e-07 60.8 311 27.0
Actinidia35990 Actinidia chinensis HOM05D004960 ORTHO05D004696 2.8e-07 60.5 132 35.6
Thecc.01G133100 Theobroma cacao HOM05D001062 ORTHO05D000884 2.8e-07 60.5 311 24.1
Nn3g16144 Nelumbo nucifera HOM05D001062 ORTHO05D000884 3.6e-07 60.1 318 26.4
Nn3g17062 Nelumbo nucifera HOM05D001062 ORTHO05D000884 3.6e-07 60.1 318 26.4
HanXRQChr03g0074181 Helianthus annuus HOM05D012567 ORTHO05D004696 4.7e-07 59.7 222 29.3
Cc06_g13850 Coffea canephora HOM05D012567 ORTHO05D004696 8.0e-07 58.9 310 24.2
Sed0023174 Sechium edule HOM05D001062 ORTHO05D000884 1.1e-06 58.5 311 25.1
EL10Ac6g15296 Beta vulgaris HOM05D001062 ORTHO05D000884 1.8e-06 57.8 309 25.6
Eucgr.J03153 Eucalyptus grandis HOM05D004960 ORTHO05D004696 1.8e-06 57.8 229 27.1
Peaxi162Scf00457g00315 Petunia axillaris HOM05D004960 ORTHO05D004696 1.8e-06 57.8 126 32.5
SalBow6G2608 Salvia bowleyana HOM05D050058 ORTHO05D004696 2.3e-06 57.4 297 25.6
BcaB07g32772 Brassica carinata HOM05D001062 ORTHO05D000884 3.1e-06 57.0 217 27.6
Haze_25253 Corylus avellana HOM05D001062 ORTHO05D000884 3.1e-06 57.0 314 24.5
Zm00001eb260060 Zea mays HOM05D001062 ORTHO05D000884 4.0e-06 56.6 312 27.2
Atru.chr4.907 Acer truncatum HOM05D001062 ORTHO05D000884 5.2e-06 56.2 312 25.6
A09p35100 Brassica napus HOM05D001062 ORTHO05D000884 5.2e-06 56.2 217 27.2
TAR626G1223 Trochodendron aralioides HOM05D004960 ORTHO05D004696 5.2e-06 56.2 309 24.3
TAR626G1419 Trochodendron aralioides HOM05D004960 ORTHO05D004696 5.2e-06 56.2 315 24.8
COL.COLO4_35750 Corchorus olitorius HOM05D001062 ORTHO05D000884 6.8e-06 55.8 308 25.0
Dinv24369 Davidia involucrata HOM05D001062 ORTHO05D000884 6.8e-06 55.8 261 25.3
QL09p029419 Quercus lobata HOM05D001062 ORTHO05D000884 6.8e-06 55.8 227 25.1
SGA_v2.0_scaffold244G44337 Striga asiatica HOM05D001062 ORTHO05D000884 6.8e-06 55.8 312 24.4
Actinidia03439 Actinidia chinensis HOM05D001062 ORTHO05D000884 8.9e-06 55.5 234 26.5
BraA09t39042Z Brassica rapa HOM05D001062 ORTHO05D000884 8.9e-06 55.5 217 27.2
PGR008G0002 Punica granatum HOM05D001062 ORTHO05D000884 8.9e-06 55.5 330 29.7
PGR119G0987 Punica granatum HOM05D001062 ORTHO05D000884 8.9e-06 55.5 330 29.7


User provided reference genes

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