Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2874 Punica granatum HOM05D006190 ORTHO05D008260 0.0e+00 1153.7 564 100.0
Prupe.3G210000 Prunus persica HOM05D006190 ORTHO05D008260 8.9e-259 896.7 565 76.5
Thecc.01G182400 Theobroma cacao HOM05D006190 ORTHO05D008260 6.4e-257 890.6 562 74.0
CSS0039152 Camellia sinensis var. sinensis HOM05D006190 ORTHO05D008260 1.1e-256 889.8 566 74.6
MD17G1106200 Malus domestica HOM05D006190 ORTHO05D008260 7.1e-256 887.1 564 74.3
Ciclev10017756m.g Citrus clementina HOM05D006190 ORTHO05D008260 3.0e-254 881.7 560 74.6
Gohir.D07G088600 Gossypium hirsutum HOM05D006190 ORTHO05D008260 1.1e-253 879.8 562 72.6
Gorai.001G095000 Gossypium raimondii HOM05D006190 ORTHO05D008260 1.5e-253 879.4 562 72.6
Dinv39750 Davidia involucrata HOM05D006190 ORTHO05D008260 1.1e-251 873.2 564 73.9
GSVIVG01030506001 Vitis vinifera HOM05D006190 ORTHO05D008260 1.1e-251 873.2 562 72.8
TWI36G1256 Tripterygium wilfordii HOM05D006190 ORTHO05D008260 1.8e-251 872.5 564 72.3
Gohir.A07G082100 Gossypium hirsutum HOM05D006190 ORTHO05D008260 2.3e-251 872.1 562 72.1
RcHm_v2.0_Chr2g0158021 Rosa chinensis HOM05D006190 ORTHO05D008260 5.2e-251 870.9 566 73.7
FAN02G1605 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.2e-250 869.8 563 73.9
Potri.002G224300 Populus trichocarpa HOM05D006190 ORTHO05D008260 7.6e-250 867.1 569 72.8
FAN14G2650 Fragaria x ananassa HOM05D006190 ORTHO05D008260 2.9e-249 865.1 563 73.4
Manes.13G065900 Manihot esculenta HOM05D006190 ORTHO05D008260 3.8e-249 864.8 567 73.4
Atru.chr6.3259 Acer truncatum HOM05D006190 ORTHO05D008260 8.4e-249 863.6 565 72.7
vmacro12161 Vaccinium macrocarpon HOM05D006190 ORTHO05D008260 1.6e-247 859.4 563 72.1
FAN05G0691 Fragaria x ananassa HOM05D006190 ORTHO05D008260 2.5e-245 852.0 614 68.2
Cfa014317 Carpinus fangiana HOM05D006190 ORTHO05D008260 6.2e-244 847.4 523 77.1
Sed0027843 Sechium edule HOM05D006190 ORTHO05D008260 1.1e-243 846.7 566 70.0
CsaV3_6G037760 Cucumis sativus L. HOM05D006190 ORTHO05D008260 1.8e-243 845.9 566 70.5
Actinidia09748 Actinidia chinensis HOM05D006190 ORTHO05D008260 9.0e-243 843.6 566 70.8
MD09G1114700 Malus domestica HOM05D006190 ORTHO05D008260 4.4e-242 841.3 600 67.5
ClCG09G011200 Citrullus lanatus HOM05D006190 ORTHO05D008260 5.8e-242 840.9 566 70.3
FvH4_6g42100 Fragaria vesca HOM05D006190 ORTHO05D008260 3.8e-241 838.2 537 74.5
Sopen05g026250 Solanum pennellii HOM05D006190 ORTHO05D008260 8.4e-241 837.0 566 71.6
Rhsim04G0034400 Rhododendron simsii HOM05D006190 ORTHO05D008260 1.1e-240 836.6 563 70.9
Sabra02G0171700 Salix brachista HOM05D006190 ORTHO05D008260 3.2e-240 835.1 584 69.2
Nn1g07299 Nelumbo nucifera HOM05D006190 ORTHO05D008260 7.3e-237 823.9 568 70.1
Rhsim06G0167400 Rhododendron simsii HOM05D006190 ORTHO05D008260 1.1e-235 820.1 563 69.6
Lj1A781G46 Lonicera japonica HOM05D006190 ORTHO05D008260 9.0e-235 817.0 567 69.8
Sc06g0009680 Simmondsia chinensis HOM05D006190 ORTHO05D008260 9.0e-235 817.0 571 67.8
EL10Ac8g20037 Beta vulgaris HOM05D006190 ORTHO05D008260 9.9e-234 813.5 564 67.2
THA.LOC104800883 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 1.7e-233 812.8 563 67.7
THA.LOC104798591 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 2.2e-233 812.4 566 67.3
Thhalv10016459m.g Eutrema salsugineum HOM05D006190 ORTHO05D008260 3.8e-233 811.6 563 66.8
DCAR_019742 Daucus carota HOM05D006190 ORTHO05D008260 4.9e-233 811.2 564 68.1
Lalb_Chr04g0264321 Lupinus albus HOM05D006190 ORTHO05D008260 9.3e-232 807.0 561 69.9
arahy.Tifrunner.gnm1.ann1.BBUS42 Arachis hypogaea HOM05D006190 ORTHO05D008260 2.3e-230 802.4 567 68.1
AT2G31340 Arabidopsis thaliana HOM05D006190 ORTHO05D008260 3.0e-230 802.0 563 66.4
arahy.Tifrunner.gnm1.ann1.5R2QIE Arachis hypogaea HOM05D006190 ORTHO05D008260 6.7e-230 800.8 567 67.9
AL4G26570 Arabidopsis lyrata HOM05D006190 ORTHO05D008260 1.1e-229 800.0 563 66.3
HanXRQChr03g0075981 Helianthus annuus HOM05D006190 ORTHO05D008260 4.3e-229 798.1 562 68.3
Phvul.006G013000 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 3.7e-228 795.0 564 67.6
Sp4g13810 Schrenkiella parvula HOM05D006190 ORTHO05D008260 3.7e-228 795.0 563 66.1
Carub.0004s1265 Capsella rubella HOM05D006190 ORTHO05D008260 1.4e-227 793.1 563 66.3
Phvul.011G111400 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 1.8e-227 792.7 564 67.9
Solyc05g042120.4 Solanum lycopersicum HOM05D006190 ORTHO05D008260 1.8e-227 792.7 525 73.0
BcaC02g11229 Brassica carinata HOM05D006190 ORTHO05D008260 5.3e-227 791.2 564 65.4
Nitab4.5_0006063g0030 Nicotiana tabacum HOM05D006190 ORTHO05D008260 1.5e-226 789.6 568 68.5
Glyma.20G058400 Glycine max HOM05D006190 ORTHO05D008260 8.4e-225 783.9 558 67.4
MSTRG.8117 Avicennia marina HOM05D006190 ORTHO05D008260 5.5e-224 781.2 568 67.4
Migut.F01671 Erythranthe guttata HOM05D006190 ORTHO05D008260 1.8e-222 776.2 561 67.7
Eucgr.A01784 Eucalyptus grandis HOM05D006190 ORTHO05D008260 1.5e-221 773.1 564 67.7
Haze_12765 Corylus avellana HOM05D006190 ORTHO05D008260 2.8e-220 768.8 579 66.8
ECA240G2645 Erigeron canadensis HOM05D006190 ORTHO05D008260 1.8e-219 766.1 569 65.9
Aa31LG5G5620 Aethionema arabicum HOM05D006190 ORTHO05D008260 4.9e-217 758.1 523 68.6
Aqoxy3G00055 Aquilegia oxysepala HOM05D006190 ORTHO05D008260 7.1e-216 754.2 571 63.4
Rhsim04G0027600 Rhododendron simsii HOM05D006190 ORTHO05D008260 2.1e-215 752.7 564 65.8
Ca_16289_v3 Cicer arietinum L. HOM05D006190 ORTHO05D008260 1.3e-214 750.0 522 69.7
Lj6g0020329 Lotus japonicus HOM05D006190 ORTHO05D008260 1.3e-214 750.0 563 65.9
Peaxi162Scf00100g01525 Petunia axillaris HOM05D006190 ORTHO05D008260 1.8e-214 749.6 525 70.1
Hund00609 Selenicereus undatus HOM05D006190 ORTHO05D008260 1.8e-214 749.6 560 64.6
Medtr3g080550 Medicago truncatula HOM05D006190 ORTHO05D008260 3.0e-214 748.8 562 63.9
PSO675G0778 Papaver somniferum HOM05D006190 ORTHO05D008260 3.9e-214 748.4 567 64.6
PSO541G5374 Papaver somniferum HOM05D006190 ORTHO05D008260 3.3e-213 745.3 567 64.4
BcaB02g10385 Brassica carinata HOM05D006190 ORTHO05D008260 2.8e-212 742.3 523 66.3
Eucgr.K00752 Eucalyptus grandis HOM05D006190 ORTHO05D008260 6.9e-211 737.6 458 77.7
Nitab4.5_0000019g0350 Nicotiana tabacum HOM05D006190 ORTHO05D008260 1.0e-209 733.8 525 69.1
MELO3C014435.2 Cucumis melo HOM05D006190 ORTHO05D008260 1.1e-205 720.3 591 61.6
SGA_v2.0_scaffold13G06447 Striga asiatica HOM05D006190 ORTHO05D008260 1.5e-205 719.9 526 67.3
Lsat_1_v5_gn_9_105860 Lactuca sativa HOM05D006190 ORTHO05D008260 3.7e-204 715.3 503 66.8
CiPaw.03G155000 Carya illinoinensis HOM05D006190 ORTHO05D008260 1.3e-201 706.8 458 73.6
HPP92_020505 Vanilla planifolia HOM05D006190 ORTHO05D008260 6.5e-201 704.5 561 60.4
COL.COLO4_21885 Corchorus olitorius HOM05D006190 ORTHO05D008260 2.4e-195 686.0 456 70.8
MBI19_g03678_MAGBIO Magnolia biondii HOM05D006190 ORTHO05D008260 1.2e-194 683.7 536 63.8
QL08p030638 Quercus lobata HOM05D006190 ORTHO05D008260 2.9e-193 679.1 493 67.7
Cpa.g.sc132.24 Carica papaya HOM05D006190 ORTHO05D008260 2.0e-186 656.4 683 52.9
Rhsim04G0033900 Rhododendron simsii HOM05D006190 ORTHO05D008260 2.6e-181 639.4 478 65.3
Ah.06g190910 Amaranthus hybridus HOM05D006190 ORTHO05D008260 7.0e-179 631.3 565 56.1
ATR0736G101 Amborella trichopoda HOM05D006190 ORTHO05D008260 6.1e-175 618.2 587 52.8
Os09g0296400 Oryza sativa ssp. japonica HOM05D006190 ORTHO05D008260 5.2e-174 615.1 565 53.8
unitig_46.g18456 Utricularia gibba HOM05D006190 ORTHO05D008260 1.4e-171 607.1 594 54.2
AUR62006846 Chenopodium quinoa HOM05D006190 ORTHO05D008260 5.9e-170 601.7 525 57.0
AUR62000500 Chenopodium quinoa HOM05D006190 ORTHO05D008260 1.5e-168 597.0 525 56.8
Lsat_1_v5_gn_2_93981 Lactuca sativa HOM05D006190 ORTHO05D008260 6.1e-159 565.1 480 59.4
Zm00001eb309080 Zea mays HOM05D006190 ORTHO05D008260 4.0e-158 562.4 530 52.8
TPR.G342 Trifolium pratense HOM05D006190 ORTHO05D008260 3.6e-151 539.3 402 64.9
Psat5g111200 Pisum sativum HOM05D006190 ORTHO05D008260 1.1e-126 458.0 303 70.0
A05p14270 Brassica napus HOM05D006190 ORTHO05D008260 4.3e-120 436.0 314 65.9
VMungo1127G1525 Vigna mungo HOM05D006190 ORTHO05D008260 5.6e-120 435.6 710 37.6
TAR020G0003 Trochodendron aralioides HOM05D006190 ORTHO05D008260 2.6e-117 426.8 319 65.5
Oeu015050.1 Olea europaea HOM05D006190 ORTHO05D008260 2.1e-114 417.2 317 64.0
SHI10054 Sapria himalayana HOM05D006190 ORTHO05D000001 2.7e-114 416.8 339 58.7
CDE07G0814 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 3.9e-113 412.9 282 67.4
Pp3c23_22000 Physcomitrium patens HOM05D006190 ORTHO05D008260 8.7e-113 411.8 603 39.1
Mapoly0014s0084 Marchantia polymorpha HOM05D006190 ORTHO05D008260 1.2e-106 391.3 595 36.3
FAN18G3300 Fragaria x ananassa HOM05D006190 ORTHO05D008260 4.6e-98 362.8 248 71.4
CARHR124960 Cardamine hirsuta HOM05D006190 ORTHO05D008260 2.5e-96 357.1 266 63.5
Aa31sc34G90 Aethionema arabicum HOM05D006190 ORTHO05D008260 1.6e-95 354.4 259 64.5
CAN.G795.2 Capsicum annuum HOM05D006190 ORTHO05D008260 6.3e-95 352.4 262 64.9
Psat5g111240 Pisum sativum HOM05D006190 ORTHO05D008260 1.9e-91 340.9 271 62.0
SEGI_33791 Sequoiadendron giganteum HOM05D006190 ORTHO05D008260 1.3e-79 301.6 244 57.0
TPR.G18389 Trifolium pratense HOM05D006190 ORTHO05D008260 1.9e-75 287.7 207 65.7
SHI10056 Sapria himalayana HOM05D006190 ORTHO05D008260 2.6e-64 250.8 211 56.4
Sopen11g022430 Solanum pennellii HOM05D006190 ORTHO05D008260 3.7e-63 246.9 208 59.1
Oeu015049.1 Olea europaea HOM05D006190 ORTHO05D008260 1.9e-59 234.6 156 70.5
C04p19010 Brassica napus HOM05D006190 ORTHO05D008260 3.6e-58 230.3 164 63.4
THA.LOC104822845 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 3.6e-58 230.3 140 71.4
TPR.G36458 Trifolium pratense HOM05D006190 ORTHO05D008260 1.0e-52 212.2 185 58.9
CBR_g25881 Chara braunii HOM05D006190 ORTHO05D008260 1.7e-52 211.5 307 38.4
FAN10G3459 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.7e-47 194.9 142 68.3
Sabra14G0120600 Salix brachista HOM05D006190 ORTHO05D008260 1.3e-44 185.3 170 58.2
BcaC01g05972 Brassica carinata HOM05D006190 ORTHO05D008260 2.7e-37 161.0 168 51.2
QL08p030629 Quercus lobata HOM05D006190 ORTHO05D027094 1.1e-30 139.0 86 74.4
Lsat_1_v5_gn_5_72540 Lactuca sativa HOM05D006190 ORTHO05D008260 1.3e-28 132.1 94 62.8
C03p20570 Brassica napus HOM05D006190 ORTHO05D008260 3.7e-23 114.0 148 44.6
CDE04G2645 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 1.6e-21 108.6 115 46.1
Hund15364 Selenicereus undatus HOM05D006190 ORTHO05D027094 4.0e-17 94.0 52 80.8
BcaC01g05961 Brassica carinata HOM05D006190 ORTHO05D008260 1.4e-14 85.5 84 47.6
Lsat_1_v5_gn_1_125520 Lactuca sativa HOM05D006190 ORTHO05D008260 1.5e-11 75.5 63 55.6
BcaC02g11231 Brassica carinata HOM05D006190 ORTHO05D027094 5.8e-08 63.5 43 62.8
BcaB01g04050 Brassica carinata HOM05D006190 ORTHO05D008260 7.1e-06 56.6 61 44.3
Psat5g200440 Pisum sativum HOM05D000228 ORTHO05D001545 9.3e-06 56.2 64 43.8


User provided reference genes

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