Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2675 Punica granatum HOM05D006002 ORTHO05D007651 4.8e-230 800.8 407 100.0
QL04p088541 Quercus lobata HOM05D006002 ORTHO05D007651 9.9e-135 484.2 350 67.4
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 1.8e-131 473.4 398 62.6
Potri.003G221400 Populus trichocarpa HOM05D006002 ORTHO05D007651 5.1e-131 471.9 339 68.4
Prupe.4G144100 Prunus persica HOM05D006002 ORTHO05D007651 2.1e-129 466.5 364 62.9
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 5.3e-128 461.8 353 65.2
RcHm_v2.0_Chr5g0027061 Rosa chinensis HOM05D006002 ORTHO05D007651 5.3e-128 461.8 363 63.9
Ciclev10020646m.g Citrus clementina HOM05D006002 ORTHO05D007651 3.4e-127 459.1 332 67.2
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 5.8e-127 458.4 329 67.2
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 5.8e-127 458.4 329 67.5
TAR627G1081 Trochodendron aralioides HOM05D006002 ORTHO05D007651 1.7e-126 456.8 375 62.7
Nn3g20175 Nelumbo nucifera HOM05D006002 ORTHO05D007651 2.9e-126 456.1 332 67.5
FAN16G0275 Fragaria x ananassa HOM05D006002 ORTHO05D007651 4.9e-126 455.3 369 63.4
Ca_09098_v3 Cicer arietinum L. HOM05D006002 ORTHO05D007651 8.4e-126 454.5 351 65.5
Psat3g026200 Pisum sativum HOM05D006002 ORTHO05D007651 1.4e-125 453.8 335 66.0
Actinidia37107 Actinidia chinensis HOM05D006002 ORTHO05D007651 5.5e-125 451.8 332 66.3
Hma1.2p1_0193F.1_g084460 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 1.2e-124 450.7 339 66.1
Hma1.2p1_0193F.1_g084470 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 1.2e-124 450.7 339 66.1
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 2.1e-124 449.9 352 64.8
CSS0008604 Camellia sinensis var. sinensis HOM05D006002 ORTHO05D007651 2.7e-124 449.5 360 64.7
TWI53G1943 Tripterygium wilfordii HOM05D006002 ORTHO05D007651 6.0e-124 448.4 329 67.5
Manes.03G102600 Manihot esculenta HOM05D006002 ORTHO05D007651 1.3e-123 447.2 371 63.1
Glyma.15G260100 Glycine max HOM05D006002 ORTHO05D007651 2.3e-123 446.4 358 64.0
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 8.7e-123 444.5 332 64.5
vmacro09790 Vaccinium macrocarpon HOM05D006002 ORTHO05D007651 8.7e-123 444.5 332 67.2
COL.COLO4_25103 Corchorus olitorius HOM05D006002 ORTHO05D007651 1.5e-122 443.7 355 63.7
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 1.9e-122 443.4 318 68.9
Lj3g0018048 Lotus japonicus HOM05D006002 ORTHO05D007651 1.9e-122 443.4 335 66.0
Medtr7g107330 Medicago truncatula HOM05D006002 ORTHO05D007651 3.3e-122 442.6 335 64.8
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 3.3e-122 442.6 386 59.6
Glyma.08G167200 Glycine max HOM05D006002 ORTHO05D007651 1.3e-121 440.7 375 61.1
Sopen07g034460 Solanum pennellii HOM05D006002 ORTHO05D007651 2.2e-121 439.9 334 63.8
Sabra03G0164800 Salix brachista HOM05D006002 ORTHO05D007651 2.8e-121 439.5 327 66.1
ClCG11G016270 Citrullus lanatus HOM05D006002 ORTHO05D007651 3.7e-121 439.1 333 64.0
Solyc07g066280.3 Solanum lycopersicum HOM05D006002 ORTHO05D007651 1.1e-120 437.6 371 59.6
Gohir.A05G076100 Gossypium hirsutum HOM05D006002 ORTHO05D007651 2.4e-120 436.4 339 64.3
CAN.G943.23 Capsicum annuum HOM05D006002 ORTHO05D007651 4.1e-120 435.6 333 65.2
Lj8A185G55 Lonicera japonica HOM05D006002 ORTHO05D007651 6.9e-120 434.9 334 66.2
CsaV3_2G022200 Cucumis sativus L. HOM05D006002 ORTHO05D007651 2.0e-119 433.3 334 63.8
Migut.M01570 Erythranthe guttata HOM05D006002 ORTHO05D007651 2.6e-119 433.0 330 64.2
Lsat_1_v5_gn_7_116060 Lactuca sativa HOM05D006002 ORTHO05D007651 5.9e-119 431.8 373 60.3
PGSC0003DMG400022243 Solanum tuberosum HOM05D006002 ORTHO05D007651 7.7e-119 431.4 334 62.9
Haze_07820 Corylus avellana HOM05D006002 ORTHO05D007651 1.0e-118 431.0 313 66.1
Sed0002243 Sechium edule HOM05D006002 ORTHO05D007651 1.7e-118 430.3 332 63.9
Nitab4.5_0001235g0050 Nicotiana tabacum HOM05D006002 ORTHO05D007651 2.2e-118 429.9 336 62.5
Cc05_g15870 Coffea canephora HOM05D006002 ORTHO05D007651 1.1e-117 427.6 329 64.4
Phvul.005G050900 Phaseolus vulgaris HOM05D006002 ORTHO05D007651 1.1e-117 427.6 377 59.4
Nitab4.5_0000294g0110 Nicotiana tabacum HOM05D006002 ORTHO05D007651 2.5e-117 426.4 331 62.8
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 4.2e-117 425.6 369 59.1
unitig_748.g7639 Utricularia gibba HOM05D006002 ORTHO05D007651 5.5e-117 425.2 331 62.8
Gorai.009G080200 Gossypium raimondii HOM05D006002 ORTHO05D007651 7.2e-117 424.9 339 62.5
arahy.Tifrunner.gnm1.ann1.0RH0I3 Arachis hypogaea HOM05D006002 ORTHO05D007651 9.4e-117 424.5 332 63.0
arahy.Tifrunner.gnm1.ann1.HWL53Q Arachis hypogaea HOM05D006002 ORTHO05D007651 1.2e-116 424.1 332 63.3
SGA_v2.0_scaffold7G03564 Striga asiatica HOM05D006002 ORTHO05D007651 6.1e-116 421.8 333 63.1
CANSAT56G1259 Cannabis sativa HOM05D006002 ORTHO05D007651 7.9e-116 421.4 332 63.3
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 1.8e-115 420.2 332 61.1
Aqoxy1G01586 Aquilegia oxysepala HOM05D006002 ORTHO05D007651 1.8e-115 420.2 334 62.0
MSTRG.16122 Avicennia marina HOM05D006002 ORTHO05D007651 1.8e-115 420.2 332 63.3
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 1.8e-115 420.2 384 56.5
QL04p088993 Quercus lobata HOM05D006002 ORTHO05D007651 1.8e-115 420.2 291 69.8
PSO675G3741 Papaver somniferum HOM05D006002 ORTHO05D007651 2.3e-115 419.9 331 62.5
Peaxi162Scf00232g00102 Petunia axillaris HOM05D006002 ORTHO05D007651 2.3e-115 419.9 331 61.3
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 2.3e-115 419.9 323 63.5
BcaB02g09782 Brassica carinata HOM05D006002 ORTHO05D007651 1.5e-114 417.2 369 58.3
Ah.04g163380 Amaranthus hybridus HOM05D006002 ORTHO05D007651 9.7e-114 414.5 393 55.0
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 1.3e-113 414.1 379 56.7
CiPaw.11G062100 Carya illinoinensis HOM05D006002 ORTHO05D007651 1.3e-113 414.1 298 66.8
PSO541G1619 Papaver somniferum HOM05D006002 ORTHO05D007651 2.2e-113 413.3 331 61.6
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 6.3e-113 411.8 382 56.0
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 8.2e-113 411.4 370 58.1
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 1.4e-112 410.6 346 60.4
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 2.4e-112 409.8 385 55.8
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 4.1e-112 409.1 335 60.6
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 4.1e-112 409.1 338 60.9
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 4.1e-112 409.1 406 55.4
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 6.9e-112 408.3 371 57.7
MBI02_g43301_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 6.9e-112 408.3 360 56.1
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 1.5e-111 407.1 370 57.0
Thecc.03G324000 Theobroma cacao HOM05D006002 ORTHO05D007651 2.6e-111 406.4 339 60.2
Duzib168G0541 Durio zibethinus HOM05D006002 ORTHO05D007651 5.9e-111 405.2 337 60.8
SalBow8G1862 Salvia bowleyana HOM05D006002 ORTHO05D007651 1.7e-110 403.7 369 57.7
CDE02G2905 Ceratophyllum demersum HOM05D006002 ORTHO05D007651 8.5e-110 401.4 332 60.2
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 1.6e-108 397.1 364 57.4
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 2.7e-108 396.4 364 56.6
Lalb_Chr25g0284701 Lupinus albus HOM05D006002 ORTHO05D007651 6.1e-108 395.2 292 66.8
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 1.1e-106 391.0 354 58.2
Gohir.1Z049302 Gossypium hirsutum HOM05D006002 ORTHO05D007651 7.4e-106 388.3 336 59.5
EL10Ac4g08518 Beta vulgaris HOM05D006002 ORTHO05D007651 9.7e-106 387.9 355 56.3
Gohir.D05G078800 Gossypium hirsutum HOM05D006002 ORTHO05D007651 1.8e-104 383.6 318 60.4
GSVIVG01020461001 Vitis vinifera HOM05D006002 ORTHO05D007651 4.1e-104 382.5 250 74.0
MELO3C010553.2 Cucumis melo HOM05D006002 ORTHO05D007651 7.7e-103 378.3 292 64.0
MBI02_g20986_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 2.1e-100 370.2 363 52.6
HPP92_001894 Vanilla planifolia HOM05D006002 ORTHO05D004222 8.2e-97 358.2 326 57.7
Dinv42524 Davidia involucrata HOM05D006002 ORTHO05D007651 1.8e-96 357.1 370 53.5
QL03p043202 Quercus lobata HOM05D006002 ORTHO05D007651 4.1e-96 355.9 266 66.5
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 2.7e-87 326.6 358 49.7
SEGI_37419 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 2.1e-84 317.0 291 55.3
ATR0165G036 Amborella trichopoda HOM05D006002 ORTHO05D007651 1.4e-83 314.3 258 58.5
SMO145G0236 Selaginella moellendorffii HOM05D006002 ORTHO05D007651 9.5e-77 291.6 330 48.8
Atru.chr2.1886 Acer truncatum HOM05D006002 ORTHO05D007651 1.6e-76 290.8 227 63.9
MD05G1214000 Malus domestica HOM05D006002 ORTHO05D007651 8.0e-76 288.5 258 58.1
Potri.018G000850 Populus trichocarpa HOM05D006002 ORTHO05D007651 6.8e-75 285.4 309 51.5
Mapoly0051s0043 Marchantia polymorpha HOM05D006002 ORTHO05D007651 2.8e-73 280.0 450 39.6
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 5.0e-70 269.2 452 39.2
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 3.3e-69 266.5 328 46.3
Cfa022974 Carpinus fangiana HOM05D006002 ORTHO05D007651 2.1e-68 263.8 208 63.9
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 3.6e-68 263.1 354 45.8
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 6.8e-67 258.8 317 48.6
Cpa.g.sc42.79 Carica papaya HOM05D006002 ORTHO05D007651 7.3e-61 238.8 222 57.2
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 7.3e-61 238.8 221 56.1
TPR.G32276 Trifolium pratense HOM05D006002 ORTHO05D007651 6.2e-60 235.7 365 38.6
Oeu052016.1 Olea europaea HOM05D006002 ORTHO05D007651 1.4e-59 234.6 205 60.0
Actinidia35439 Actinidia chinensis HOM05D006002 ORTHO05D007651 7.1e-56 222.2 191 59.7
Cpa.g.sc42.82 Carica papaya HOM05D006002 ORTHO05D007651 4.1e-48 196.4 126 69.0
MCO01G477 Micromonas commoda HOM05D006002 ORTHO05D007651 4.1e-48 196.4 372 34.7
TPR.G18376 Trifolium pratense HOM05D006002 ORTHO05D007651 3.9e-46 189.9 165 61.8
Potri.001G003632 Populus trichocarpa HOM05D006002 ORTHO05D007651 6.6e-46 189.1 155 64.5
QL04p062372 Quercus lobata HOM05D006002 ORTHO05D007651 6.4e-41 172.6 124 69.4
Zm00001eb031660 Zea mays HOM05D006002 ORTHO05D007651 1.9e-40 171.0 127 58.3
QL04p088694 Quercus lobata HOM05D006002 ORTHO05D007651 2.4e-40 170.6 178 54.5
Cre07.g337516 Chlamydomonas reinhardtii HOM05D006002 ORTHO05D007651 7.1e-40 169.1 312 37.2
PRCOL_00003514 Prasinoderma coloniale HOM05D006002 ORTHO05D007651 9.3e-40 168.7 413 31.0
SEGI_15629 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 1.6e-36 157.9 122 57.4
MD05G1214300 Malus domestica HOM05D006002 ORTHO05D007651 5.3e-35 152.9 112 70.5
COL.COLO4_30126 Corchorus olitorius HOM05D006002 ORTHO05D007651 3.3e-29 133.7 85 70.6
QL04p089617 Quercus lobata HOM05D002182 ORTHO05D004671 1.9e-24 117.9 128 53.1
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 2.1e-20 104.4 90 55.6
QL04p089868 Quercus lobata HOM05D006002 ORTHO05D007651 1.2e-18 98.6 65 66.2
QL03p043192 Quercus lobata HOM05D006002 ORTHO05D007651 1.5e-18 98.2 69 63.8
CAN.G548.23 Capsicum annuum HOM05D006002 ORTHO05D007651 8.4e-09 65.9 139 36.7
CAN.G42.13 Capsicum annuum HOM05D006002 ORTHO05D007651 5.5e-08 63.2 72 52.8
Cfa023409 Carpinus fangiana HOM05D006002 ORTHO05D126491 7.9e-07 59.3 204 30.4
PSO675G4619 Papaver somniferum HOM05D000047 ORTHO05D000044 2.3e-06 57.8 104 34.6


User provided reference genes

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