Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 2.5e-153 545.4 280 100.0
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.2e-84 315.8 202 80.7
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 3.2e-84 315.8 202 80.7
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 3.2e-84 315.8 201 80.1
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 2.1e-83 313.2 179 87.2
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 4.7e-83 312.0 194 83.5
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.7e-83 312.0 202 79.7
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 1.0e-82 310.8 198 81.3
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 6.7e-82 308.1 199 78.9
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 2.0e-81 306.6 234 70.1
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 2.0e-81 306.6 196 81.6
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 4.4e-81 305.4 198 79.8
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 5.7e-81 305.1 234 68.8
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 1.3e-80 303.9 204 76.5
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 1.7e-80 303.5 198 80.3
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 2.2e-80 303.1 208 76.4
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.8e-80 302.8 198 79.8
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 3.7e-80 302.4 179 86.0
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 1.4e-79 300.4 215 74.0
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 1.8e-79 300.1 182 86.3
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 1.8e-79 300.1 200 76.5
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 2.4e-79 299.7 198 79.8
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 3.1e-79 299.3 197 79.2
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.1e-79 299.3 197 78.7
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 5.3e-79 298.5 182 83.5
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.2e-78 297.4 178 84.8
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 1.5e-78 297.0 179 83.8
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 2.6e-78 296.2 232 68.1
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 2.6e-78 296.2 198 78.8
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 4.5e-78 295.4 179 82.1
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 4.5e-78 295.4 197 77.7
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 4.5e-78 295.4 178 84.3
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.5e-78 295.4 200 78.5
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 7.7e-78 294.7 198 76.3
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 1.0e-77 294.3 202 76.2
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 1.0e-77 294.3 199 76.9
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 1.0e-77 294.3 200 77.0
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 1.3e-77 293.9 196 75.5
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 1.3e-77 293.9 198 78.3
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 1.3e-77 293.9 205 77.1
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.7e-77 293.5 178 83.7
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.2e-77 293.1 194 79.4
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.2e-77 293.1 194 79.4
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 2.2e-77 293.1 202 76.2
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 2.9e-77 292.7 178 83.1
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 3.8e-77 292.4 197 77.2
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 3.8e-77 292.4 209 74.2
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 3.8e-77 292.4 206 75.2
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 5.0e-77 292.0 174 84.5
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 5.0e-77 292.0 200 79.5
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 6.5e-77 291.6 203 75.9
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 8.5e-77 291.2 206 74.8
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 8.5e-77 291.2 206 74.8
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 8.5e-77 291.2 199 74.4
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 1.1e-76 290.8 201 76.6
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.9e-76 290.0 244 66.8
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 3.2e-76 289.3 204 75.5
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 9.4e-76 287.7 196 76.5
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.6e-75 287.0 194 75.8
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 3.6e-75 285.8 179 79.3
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 3.6e-75 285.8 199 76.4
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 6.1e-75 285.0 191 74.3
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 8.0e-75 284.6 197 76.6
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 8.0e-75 284.6 178 79.8
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.8e-74 283.5 160 88.8
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 2.3e-74 283.1 197 74.6
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 3.9e-74 282.3 202 75.2
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 1.1e-73 280.8 204 72.5
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.1e-73 280.8 199 74.4
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.0e-73 280.0 199 74.4
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 7.4e-73 278.1 237 65.0
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 7.4e-73 278.1 199 74.4
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 9.7e-73 277.7 204 72.5
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.8e-72 276.2 199 73.9
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 2.4e-71 273.1 158 86.7
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 5.3e-71 271.9 189 74.6
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 7.0e-71 271.6 189 71.4
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 9.1e-71 271.2 172 79.7
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 1.6e-70 270.4 208 67.8
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 2.6e-70 269.6 224 66.1
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 3.5e-70 269.2 197 69.0
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.0e-69 267.7 198 70.7
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.7e-69 266.9 194 69.6
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.7e-69 266.9 194 70.1
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 5.0e-69 265.4 194 71.1
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 5.0e-69 265.4 194 71.1
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 5.0e-69 265.4 194 71.1
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 1.1e-68 264.2 175 77.1
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 1.9e-68 263.5 203 68.5
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.9e-68 263.5 200 69.0
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 1.9e-68 263.5 197 69.5
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.5e-68 263.1 193 70.5
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 3.2e-68 262.7 299 52.5
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 4.2e-68 262.3 204 68.6
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 4.2e-68 262.3 201 69.2
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 9.4e-68 261.2 200 67.5
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 9.4e-68 261.2 180 72.2
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 9.4e-68 261.2 188 73.4
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 2.1e-67 260.0 180 75.0
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 4.7e-67 258.8 196 71.4
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 4.7e-67 258.8 200 69.0
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 8.0e-67 258.1 205 63.4
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 1.0e-66 257.7 200 68.5
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 1.0e-66 257.7 206 67.5
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 3.0e-66 256.1 195 67.7
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 3.0e-66 256.1 203 67.0
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.0e-66 256.1 198 69.7
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 5.2e-66 255.4 201 65.7
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 8.8e-66 254.6 168 78.6
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 2.0e-65 253.4 194 64.4
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 5.7e-65 251.9 194 67.5
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 7.5e-65 251.5 203 63.5
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 7.5e-65 251.5 195 63.6
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 9.8e-65 251.1 175 69.7
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 9.8e-65 251.1 208 64.9
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 2.8e-64 249.6 196 70.4
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 3.7e-64 249.2 171 72.5
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 3.7e-64 249.2 159 81.1
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 6.1e-59 231.9 194 64.4
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 6.1e-59 231.9 203 65.5
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 2.8e-56 223.0 168 69.0
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 6.3e-56 221.9 161 72.7
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 4.1e-55 219.2 197 61.9
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 1.2e-54 217.6 126 85.7
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.6e-53 211.8 126 84.1
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 1.6e-51 207.2 121 84.3
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 6.1e-51 205.3 191 56.0
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.5e-49 200.7 168 67.3
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 1.7e-45 187.2 192 50.0
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 2.3e-45 186.8 120 80.8
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 3.3e-44 183.0 170 55.9
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 4.3e-44 182.6 120 73.3
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 1.2e-43 181.0 184 56.5
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.2e-43 181.0 150 60.0
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 2.8e-43 179.9 103 86.4
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 4.7e-43 179.1 104 85.6
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.8e-42 177.2 196 54.1
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 4.4e-41 172.6 167 56.9
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 4.1e-39 166.0 95 83.2
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 7.3e-36 155.2 165 49.7
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 2.1e-35 153.7 149 52.3
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 4.7e-35 152.5 174 50.0
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 2.4e-31 140.2 113 64.6
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 4.1e-23 112.8 103 61.2
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 4.0e-18 96.3 73 61.6
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 4.0e-18 96.3 156 38.5
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 6.8e-18 95.5 66 66.7
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 8.9e-18 95.1 55 76.4
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 1.5e-17 94.4 73 60.3
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.0e-17 94.0 208 38.0
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 9.3e-15 85.1 190 32.1
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 8.7e-13 78.6 62 69.4
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 2.1e-11 73.9 89 47.2
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 1.1e-10 71.6 40 87.5
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 1.2e-09 68.2 56 62.5
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 1.4e-07 61.2 36 77.8


User provided reference genes

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