Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 1.3e-307 1058.9 545 100.0
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 6.7e-195 684.5 510 67.5
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 2.0e-191 672.9 548 63.5
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 4.5e-191 671.8 510 65.9
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 1.1e-189 667.2 510 64.7
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 3.3e-186 655.6 548 61.3
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 1.3e-185 653.7 524 63.2
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 1.3e-185 653.7 529 64.1
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 4.8e-185 651.7 526 62.0
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 6.3e-185 651.4 509 65.2
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 6.3e-185 651.4 507 65.3
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 8.2e-185 651.0 534 60.9
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 8.2e-185 651.0 509 65.0
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 1.8e-184 649.8 510 63.9
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 2.4e-184 649.4 529 63.5
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 2.2e-182 642.9 510 62.9
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 3.8e-182 642.1 513 62.4
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 6.5e-182 641.3 545 62.6
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 8.5e-182 641.0 554 61.2
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 3.2e-181 639.0 516 62.0
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 4.2e-181 638.6 536 62.5
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 2.7e-180 636.0 532 61.7
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 4.7e-180 635.2 524 61.6
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 4.7e-180 635.2 518 60.8
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 8.0e-180 634.4 529 60.3
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 6.7e-179 631.3 506 62.6
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 1.2e-178 630.6 597 55.6
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 4.4e-178 628.6 517 62.5
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 1.3e-177 627.1 556 60.1
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 1.7e-177 626.7 542 60.9
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 2.8e-177 625.9 544 59.7
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 4.8e-177 625.2 575 57.6
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 5.3e-176 621.7 523 60.2
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 7.0e-176 621.3 485 64.3
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 1.2e-175 620.5 527 60.5
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.6e-175 620.2 515 61.4
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 3.5e-175 619.0 554 57.4
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 5.9e-175 618.2 527 59.2
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.3e-174 617.1 545 59.1
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 1.7e-174 616.7 509 60.7
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 1.7e-174 616.7 543 58.6
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 6.5e-174 614.8 509 60.5
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 8.5e-174 614.4 543 59.1
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 1.5e-173 613.6 553 57.3
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.5e-173 613.6 555 57.5
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 2.5e-173 612.8 528 59.1
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 1.2e-172 610.5 538 58.0
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 1.6e-172 610.1 557 56.7
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 5.2e-171 605.1 588 55.1
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 6.8e-171 604.7 509 59.5
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 2.6e-170 602.8 551 57.7
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 7.5e-170 601.3 589 54.5
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 9.8e-170 600.9 555 56.8
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 9.8e-170 600.9 540 58.0
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.2e-169 599.7 587 55.7
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 2.2e-169 599.7 490 60.4
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 2.8e-169 599.4 508 59.6
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.4e-168 597.0 509 59.9
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.1e-168 595.9 509 59.1
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.6e-167 593.6 585 54.5
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 2.0e-167 593.2 513 58.9
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 5.0e-166 588.6 563 58.3
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 1.1e-165 587.4 457 64.8
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.5e-165 587.0 510 58.4
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 3.3e-165 585.9 542 56.3
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 4.2e-165 585.5 592 54.6
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 9.5e-165 584.3 542 55.9
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.1e-164 583.2 526 57.2
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 4.7e-164 582.0 526 57.2
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.0e-163 580.9 531 58.4
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 2.3e-163 579.7 526 57.0
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 2.0e-162 576.6 534 57.7
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 7.5e-162 574.7 512 57.6
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 3.7e-161 572.4 508 57.5
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 8.3e-161 571.2 546 55.1
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 1.4e-160 570.5 507 56.6
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 7.0e-160 568.2 548 54.7
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 9.2e-160 567.8 507 56.6
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 1.2e-159 567.4 518 55.6
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 2.7e-159 566.2 512 57.0
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 5.9e-159 565.1 529 56.3
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 2.9e-158 562.8 468 60.7
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 5.0e-158 562.0 543 54.1
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 5.6e-157 558.5 553 52.4
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 9.5e-157 557.8 547 53.7
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 1.2e-156 557.4 355 71.5
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 4.7e-156 555.4 508 55.7
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 4.7e-156 555.4 573 52.4
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 8.0e-156 554.7 512 55.5
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.4e-155 553.9 357 71.4
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 2.3e-155 553.1 541 54.5
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 3.4e-154 549.3 552 52.9
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 7.5e-154 548.1 482 58.3
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 2.2e-153 546.6 546 53.1
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 6.4e-153 545.0 541 53.8
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 1.9e-152 543.5 539 52.7
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 4.3e-149 532.3 507 54.2
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 2.8e-148 529.6 533 52.3
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 4.7e-148 528.9 361 68.4
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 6.2e-148 528.5 401 62.8
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 1.4e-147 527.3 557 50.3
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 6.8e-147 525.0 461 56.8
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 1.2e-143 514.2 551 49.9
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.0e-142 511.1 513 51.9
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 3.9e-142 509.2 541 49.0
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 5.0e-142 508.8 498 54.0
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 2.3e-139 500.0 556 47.5
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 1.6e-135 487.3 512 51.0
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 6.0e-135 485.3 517 50.9
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 3.9e-134 482.6 522 49.4
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 5.1e-134 482.3 505 49.3
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 1.2e-132 477.6 398 57.8
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 2.8e-132 476.5 521 51.1
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 2.2e-129 466.8 299 70.6
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 3.2e-128 463.0 315 67.3
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 2.1e-127 460.3 529 46.9
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.1e-125 454.5 423 55.1
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 9.6e-125 451.4 524 48.7
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 3.4e-122 443.0 321 63.9
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 6.0e-119 432.2 467 49.7
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 5.3e-115 419.1 361 56.0
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 4.5e-114 416.0 268 69.4
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 9.9e-114 414.8 568 40.8
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.7e-113 414.1 374 54.0
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 2.2e-113 413.7 374 54.8
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 3.8e-113 412.9 353 55.5
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 8.4e-113 411.8 569 40.9
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 8.4e-113 411.8 569 40.9
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 1.9e-112 410.6 476 47.1
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 2.4e-112 410.2 602 40.2
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 7.1e-112 408.7 584 41.4
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 2.1e-111 407.1 584 41.3
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 3.5e-111 406.4 443 49.2
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 7.9e-111 405.2 347 55.6
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 7.9e-111 405.2 280 64.3
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 3.9e-110 402.9 376 52.1
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 1.5e-109 401.0 348 54.3
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 1.6e-108 397.5 421 48.2
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 4.8e-108 396.0 496 46.2
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 3.4e-106 389.8 376 51.3
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 3.4e-106 389.8 376 51.3
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 4.9e-105 386.0 550 41.1
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 2.3e-102 377.1 577 39.2
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 2.3e-102 377.1 577 39.2
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 3.9e-102 376.3 299 57.2
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 3.7e-100 369.8 322 56.5
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.0e-98 364.0 208 81.2
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 5.5e-96 355.9 208 79.8
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 7.1e-96 355.5 228 69.7
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 4.6e-95 352.8 447 44.7
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 2.2e-89 334.0 417 47.5
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 1.0e-81 308.5 298 49.7
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 1.8e-70 271.2 536 37.3
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 2.9e-65 253.8 289 51.2
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 4.8e-60 236.5 318 47.5
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 2.4e-59 234.2 538 34.0
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 5.4e-51 206.5 166 59.0
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 9.1e-51 205.7 285 44.6
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 7.2e-48 196.1 122 74.6
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 7.2e-48 196.1 563 29.5
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 8.0e-47 192.6 268 47.0
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 1.0e-38 165.6 273 35.5
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.0e-38 165.6 104 72.1
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 6.8e-38 162.9 138 55.8
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 6.4e-36 156.4 83 88.0
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 2.2e-28 131.3 109 53.2
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 2.9e-28 131.0 67 89.6
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 1.3e-25 122.1 65 87.7
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 6.6e-25 119.8 237 40.1
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 4.3e-24 117.1 81 66.7
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 1.4e-22 112.1 94 56.4
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 7.1e-19 99.8 223 31.8
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.1e-11 75.9 233 30.0
Mapoly0049s0059 Marchantia polymorpha HOM05D005323 ORTHO05D006820 9.6e-08 62.8 157 28.0
AUR62031624 Chenopodium quinoa HOM05D005323 ORTHO05D006820 2.8e-07 61.2 225 24.9
EL10Ac4g07922 Beta vulgaris HOM05D005323 ORTHO05D006820 3.6e-07 60.8 225 24.4
Aqoxy1G03964 Aquilegia oxysepala HOM05D002303 ORTHO05D007639 4.8e-07 60.5 322 21.4
AUR62020514 Chenopodium quinoa HOM05D005323 ORTHO05D006820 1.4e-06 58.9 207 24.2
SEGI_06199 Sequoiadendron giganteum HOM05D005323 ORTHO05D006820 2.4e-06 58.2 157 28.0
Lj1g0017737 Lotus japonicus HOM05D005323 ORTHO05D006820 5.3e-06 57.0 160 28.1
Eucgr.L00010 Eucalyptus grandis HOM05D005323 ORTHO05D006820 6.9e-06 56.6 165 26.7
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 9.0e-06 56.2 123 36.6


User provided reference genes

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