Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 7.0e-232 807.0 428 100.0
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 2.6e-101 373.2 395 55.9
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 7.8e-98 361.7 388 55.7
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 3.0e-97 359.8 416 51.7
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 4.3e-96 355.9 421 52.5
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 2.1e-95 353.6 421 52.3
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 5.3e-94 349.0 390 53.6
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 1.7e-92 344.0 395 52.4
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 2.2e-92 343.6 389 53.0
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 2.2e-92 343.6 396 52.3
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 2.9e-92 343.2 389 51.2
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 6.4e-92 342.0 392 53.6
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 8.4e-92 341.7 389 53.5
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 4.2e-91 339.3 392 51.8
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 3.5e-90 336.3 389 52.7
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 4.6e-90 335.9 363 55.4
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 7.8e-90 335.1 408 51.0
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 5.1e-89 332.4 423 49.9
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 8.7e-89 331.6 382 51.6
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 1.5e-88 330.9 384 51.3
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 3.6e-87 326.2 397 49.6
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 3.1e-86 323.2 401 50.9
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 4.0e-86 322.8 415 49.6
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 2.6e-85 320.1 359 51.5
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 8.4e-84 315.1 409 48.4
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 2.4e-83 313.5 398 51.0
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 1.2e-82 311.2 384 47.4
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 2.1e-82 310.5 395 50.6
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 3.5e-82 309.7 395 49.6
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 3.5e-82 309.7 384 49.7
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 6.0e-82 308.9 431 46.6
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 1.8e-81 307.4 397 48.1
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 3.9e-81 306.2 417 47.5
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 3.9e-81 306.2 411 47.7
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 3.9e-81 306.2 430 47.4
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 1.9e-80 303.9 390 47.7
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 2.5e-80 303.5 397 47.4
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 1.3e-79 301.2 251 64.9
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 1.6e-79 300.8 396 47.7
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 2.8e-79 300.1 339 52.8
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 3.7e-79 299.7 371 50.4
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 5.3e-78 295.8 397 46.9
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 6.9e-78 295.4 405 45.2
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 2.0e-77 293.9 390 45.9
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 2.0e-77 293.9 404 46.3
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 2.0e-77 293.9 384 46.6
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 3.4e-77 293.1 399 45.6
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 3.4e-77 293.1 385 46.8
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 4.5e-77 292.7 393 46.8
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 5.8e-77 292.4 410 46.1
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 7.6e-77 292.0 213 69.5
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.0e-76 291.6 404 46.3
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 1.3e-76 291.2 242 65.3
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 1.7e-76 290.8 401 47.9
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 2.2e-76 290.4 384 46.6
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 3.8e-76 289.7 398 46.2
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 4.9e-76 289.3 409 46.5
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 4.2e-75 286.2 375 47.5
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 5.5e-75 285.8 423 45.6
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 1.2e-74 284.6 368 45.9
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 2.1e-74 283.9 341 52.2
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 2.7e-74 283.5 226 67.3
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 1.0e-73 281.6 440 43.6
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 1.8e-73 280.8 412 45.1
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 2.3e-73 280.4 348 49.1
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 5.1e-73 279.3 397 44.3
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 6.7e-73 278.9 386 44.0
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 8.7e-73 278.5 342 51.5
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 3.3e-72 276.6 351 49.0
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 4.3e-72 276.2 409 46.2
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 1.8e-70 270.8 382 43.7
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 2.4e-70 270.4 264 56.4
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 2.2e-68 263.8 406 43.3
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 6.5e-68 262.3 355 45.1
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 1.4e-67 261.2 358 44.1
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 9.3e-67 258.5 322 49.4
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 1.6e-66 257.7 441 40.1
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 2.7e-66 256.9 450 42.0
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 4.6e-66 256.1 431 41.3
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 4.6e-66 256.1 396 42.2
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 1.3e-65 254.6 370 44.9
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 3.9e-65 253.1 211 62.1
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 5.1e-65 252.7 211 61.6
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 6.7e-65 252.3 437 38.4
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 1.5e-64 251.1 301 52.2
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 1.9e-64 250.8 349 46.7
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 2.6e-61 240.4 385 43.9
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 4.5e-61 239.6 387 43.9
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 2.9e-60 236.9 267 50.6
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 2.9e-60 236.9 267 50.6
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 2.9e-60 236.9 267 50.6
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 4.2e-59 233.0 392 41.3
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 7.2e-59 232.3 308 49.0
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 2.1e-58 230.7 211 57.8
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.1e-56 224.9 392 38.8
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 2.0e-56 224.2 301 47.8
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 2.5e-56 223.8 389 41.6
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 2.5e-56 223.8 208 58.2
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.7e-55 221.1 184 65.2
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 1.7e-55 221.1 381 41.2
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 4.8e-55 219.5 371 41.2
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 8.2e-55 218.8 179 67.6
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 1.1e-54 218.4 207 56.0
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 1.8e-54 217.6 213 56.8
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 1.8e-54 217.6 399 39.8
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 2.4e-54 217.2 207 57.5
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 4.1e-54 216.5 177 65.5
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.0e-53 214.2 411 36.5
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 4.5e-53 213.0 385 40.0
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 1.8e-49 201.1 246 47.6
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 5.7e-48 196.1 331 40.2
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 9.7e-48 195.3 192 56.8
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 9.7e-48 195.3 355 39.2
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 1.7e-47 194.5 414 38.4
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 1.5e-45 188.0 390 36.7
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 7.7e-45 185.7 239 44.8
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 1.7e-44 184.5 206 49.0
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 2.5e-43 180.6 267 43.4
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 1.6e-42 177.9 353 38.8
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.1e-42 177.6 178 56.7
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 1.5e-40 171.4 287 43.2
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 3.8e-36 156.8 277 39.4
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 1.6e-34 151.4 246 46.7
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.0e-33 148.7 197 44.7
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 2.2e-31 141.0 277 37.5
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 8.3e-31 139.0 117 64.1
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 1.8e-30 137.9 210 41.9
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 2.4e-30 137.5 211 44.1
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 3.1e-30 137.1 170 45.9
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 5.0e-28 129.8 189 43.9
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 4.7e-26 123.2 93 69.9
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 5.2e-25 119.8 206 39.3
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 6.8e-25 119.4 118 56.8
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 6.8e-25 119.4 118 56.8
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 2.0e-24 117.9 157 49.0
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 2.2e-23 114.4 370 33.5
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 8.3e-23 112.5 90 65.6
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 9.1e-22 109.0 99 54.5
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 2.7e-21 107.5 109 56.9
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 4.5e-21 106.7 79 65.8
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 3.8e-20 103.6 86 61.6
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 1.6e-18 98.2 247 34.8
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 4.0e-17 93.6 254 31.5
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 2.9e-15 87.4 75 56.0
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 5.0e-12 76.6 380 24.5
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 5.0e-12 76.6 55 67.3
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 4.3e-11 73.6 125 33.6
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 5.6e-11 73.2 80 50.0
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 2.3e-09 67.8 44 68.2
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 8.9e-09 65.9 114 35.1
arahy.Tifrunner.gnm1.ann1.H97TV8 Arachis hypogaea HOM05D004411 ORTHO05D005569 7.5e-08 62.8 78 41.0
CBR_g6715 Chara braunii HOM05D004411 ORTHO05D005569 1.1e-06 58.9 160 32.5


User provided reference genes

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