Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2631 Punica granatum HOM05D007153 ORTHO05D008769 5.3e-151 537.7 284 100.0
Eucgr.F01378 Eucalyptus grandis HOM05D007153 ORTHO05D008769 3.7e-88 328.9 300 65.0
Thecc.07G140300 Theobroma cacao HOM05D007153 ORTHO05D008769 4.3e-84 315.5 221 75.1
COL.COLO4_17448 Corchorus olitorius HOM05D007153 ORTHO05D008769 7.3e-84 314.7 286 62.2
Sabra11G0083600 Salix brachista HOM05D007153 ORTHO05D008769 2.3e-82 309.7 221 73.3
Gohir.D13G155400 Gossypium hirsutum HOM05D007153 ORTHO05D008769 3.1e-82 309.3 214 75.2
Gorai.013G176000 Gossypium raimondii HOM05D007153 ORTHO05D008769 6.8e-82 308.1 214 75.2
GSVIVG01014069001 Vitis vinifera HOM05D007153 ORTHO05D008769 6.8e-82 308.1 215 74.0
Ciclev10021578m.g Citrus clementina HOM05D007153 ORTHO05D008769 1.2e-81 307.4 221 72.9
Duzib213G0031 Durio zibethinus HOM05D007153 ORTHO05D008769 1.5e-81 307.0 281 62.6
Prupe.4G153500 Prunus persica HOM05D007153 ORTHO05D008769 9.8e-81 304.3 241 68.9
TWI38G0031 Tripterygium wilfordii HOM05D007153 ORTHO05D008769 1.3e-80 303.9 244 66.4
vmacro11989 Vaccinium macrocarpon HOM05D007153 ORTHO05D008769 2.2e-80 303.1 211 74.4
Lj1A822T45 Lonicera japonica HOM05D007153 ORTHO05D008769 2.9e-80 302.8 289 59.5
Potri.011G101800 Populus trichocarpa HOM05D007153 ORTHO05D008769 2.9e-80 302.8 212 74.5
PGSC0003DMG400007056 Solanum tuberosum HOM05D007153 ORTHO05D008769 2.9e-80 302.8 221 69.2
Nn3g20646 Nelumbo nucifera HOM05D007153 ORTHO05D008769 4.9e-80 302.0 284 62.3
Cc05_g10530 Coffea canephora HOM05D007153 ORTHO05D008769 8.3e-80 301.2 220 70.0
Sopen07g030290 Solanum pennellii HOM05D007153 ORTHO05D008769 1.1e-79 300.8 254 63.4
Solyc07g062030.3 Solanum lycopersicum HOM05D007153 ORTHO05D008769 1.9e-79 300.1 220 70.0
CiPaw.11G154200 Carya illinoinensis HOM05D007153 ORTHO05D008769 7.1e-79 298.1 222 70.3
Dinv26693 Davidia involucrata HOM05D007153 ORTHO05D008769 2.1e-78 296.6 291 59.5
Peaxi162Scf00111g01220 Petunia axillaris HOM05D007153 ORTHO05D008769 2.1e-78 296.6 209 71.8
Rhsim06G0187600 Rhododendron simsii HOM05D007153 ORTHO05D008769 2.1e-78 296.6 211 73.5
CSS0012595 Camellia sinensis var. sinensis HOM05D007153 ORTHO05D008769 2.7e-78 296.2 211 73.9
Haze_08464 Corylus avellana HOM05D007153 ORTHO05D008769 2.7e-78 296.2 222 69.8
RcHm_v2.0_Chr5g0028871 Rosa chinensis HOM05D007153 ORTHO05D008769 3.5e-78 295.8 215 71.2
FAN25G3240 Fragaria x ananassa HOM05D007153 ORTHO05D008769 4.6e-78 295.4 215 70.7
Atru.chr2.1920 Acer truncatum HOM05D007153 ORTHO05D008769 6.0e-78 295.0 212 72.2
FvH4_3g17350 Fragaria vesca HOM05D007153 ORTHO05D008769 7.8e-78 294.7 215 70.2
MD03G1252100 Malus domestica HOM05D007153 ORTHO05D008769 7.8e-78 294.7 215 72.6
Sc03g0010790 Simmondsia chinensis HOM05D007153 ORTHO05D008769 1.3e-77 293.9 263 60.8
Nitab4.5_0003618g0090 Nicotiana tabacum HOM05D007153 ORTHO05D008769 1.7e-77 293.5 220 70.5
CAN.G375.63 Capsicum annuum HOM05D007153 ORTHO05D008769 2.3e-77 293.1 221 69.2
PSO832G0017 Papaver somniferum HOM05D007153 ORTHO05D008769 2.3e-77 293.1 215 71.6
Hma1.2p1_0713F.1_g207790 Hydrangea macrophylla HOM05D007153 ORTHO05D008769 3.0e-77 292.7 209 71.3
CANSAT56G2533 Cannabis sativa HOM05D007153 ORTHO05D008769 3.9e-77 292.4 215 69.3
Lj3g0020060 Lotus japonicus HOM05D007153 ORTHO05D008769 3.9e-77 292.4 223 66.8
AL1G62070 Arabidopsis lyrata HOM05D007153 ORTHO05D008769 8.6e-77 291.2 260 62.3
Migut.H02033 Erythranthe guttata HOM05D007153 ORTHO05D008769 8.6e-77 291.2 215 69.3
THA.LOC104810421 Tarenaya hassleriana HOM05D007153 ORTHO05D008769 1.1e-76 290.8 216 69.4
Cfa019490 Carpinus fangiana HOM05D007153 ORTHO05D008769 1.5e-76 290.4 222 69.8
ECA236G0620 Erigeron canadensis HOM05D007153 ORTHO05D008769 1.5e-76 290.4 218 67.9
CsaV3_4G032710 Cucumis sativus L. HOM05D007153 ORTHO05D008769 1.9e-76 290.0 213 70.0
MSTRG.14258 Avicennia marina HOM05D007153 ORTHO05D008769 2.5e-76 289.7 212 72.2
QL08p027831 Quercus lobata HOM05D007153 ORTHO05D008769 2.5e-76 289.7 219 69.4
A06p00970 Brassica napus HOM05D007153 ORTHO05D008769 3.3e-76 289.3 242 65.7
MD11G1273600 Malus domestica HOM05D007153 ORTHO05D008769 7.3e-76 288.1 204 74.5
ClCG11G017050 Citrullus lanatus HOM05D007153 ORTHO05D008769 9.5e-76 287.7 213 68.5
Ah.06g187590 Amaranthus hybridus HOM05D007153 ORTHO05D008769 1.6e-75 287.0 242 64.0
Carub.0001s4270 Capsella rubella HOM05D007153 ORTHO05D008769 2.1e-75 286.6 214 71.0
HanXRQChr15g0495311 Helianthus annuus HOM05D007153 ORTHO05D008769 2.1e-75 286.6 218 67.0
AUR62039568 Chenopodium quinoa HOM05D007153 ORTHO05D008769 3.6e-75 285.8 257 60.7
MELO3C016680.2 Cucumis melo HOM05D007153 ORTHO05D008769 3.6e-75 285.8 263 60.5
Atru.chr2.1917 Acer truncatum HOM05D007153 ORTHO05D008769 8.1e-75 284.6 212 70.8
Sed0027291 Sechium edule HOM05D007153 ORTHO05D008769 8.1e-75 284.6 213 69.0
PSO063G3995 Papaver somniferum HOM05D007153 ORTHO05D008769 1.1e-74 284.3 227 67.0
Hund10387 Selenicereus undatus HOM05D007153 ORTHO05D008769 1.4e-74 283.9 250 60.4
Lsat_1_v5_gn_7_100481 Lactuca sativa HOM05D007153 ORTHO05D008769 2.3e-74 283.1 288 56.9
AT1G53520 Arabidopsis thaliana HOM05D007153 ORTHO05D008769 3.1e-74 282.7 214 70.1
BraA06t23324Z Brassica rapa HOM05D007153 ORTHO05D008769 5.2e-74 282.0 242 64.5
arahy.Tifrunner.gnm1.ann1.57A972 Arachis hypogaea HOM05D007153 ORTHO05D008769 6.8e-74 281.6 215 68.4
AUR62019681 Chenopodium quinoa HOM05D007153 ORTHO05D008769 1.5e-73 280.4 205 69.8
Sp1g40050 Schrenkiella parvula HOM05D007153 ORTHO05D008769 1.5e-73 280.4 220 68.2
TPR.G6902 Trifolium pratense HOM05D007153 ORTHO05D008769 1.5e-73 280.4 226 64.6
arahy.Tifrunner.gnm1.ann1.C8MR0W Arachis hypogaea HOM05D007153 ORTHO05D008769 2.6e-73 279.6 215 68.4
Glyma.15G242900 Glycine max HOM05D007153 ORTHO05D008769 3.4e-73 279.3 280 56.4
CARHR043760 Cardamine hirsuta HOM05D007153 ORTHO05D008769 4.4e-73 278.9 214 68.2
Thhalv10011696m.g Eutrema salsugineum HOM05D007153 ORTHO05D008769 4.4e-73 278.9 206 70.4
Psat1g008400 Pisum sativum HOM05D007153 ORTHO05D008769 4.4e-73 278.9 207 68.6
Glyma.13G262500 Glycine max HOM05D007153 ORTHO05D008769 1.7e-72 276.9 280 56.1
MBI07_g07830_MAGBIO Magnolia biondii HOM05D007153 ORTHO05D008769 2.2e-72 276.6 213 65.7
unitig_747.g21594 Utricularia gibba HOM05D007153 ORTHO05D008769 2.2e-72 276.6 261 57.5
BcaB07g33323 Brassica carinata HOM05D007153 ORTHO05D008769 2.9e-72 276.2 228 65.8
Medtr2g072510 Medicago truncatula HOM05D007153 ORTHO05D008769 2.9e-72 276.2 207 68.6
Ca_03417_v3 Cicer arietinum L. HOM05D007153 ORTHO05D008769 3.7e-72 275.8 207 67.1
Ca_29738_v3 Cicer arietinum L. HOM05D007153 ORTHO05D008769 3.7e-72 275.8 207 67.1
C06p09270 Brassica napus HOM05D007153 ORTHO05D008769 4.9e-72 275.4 270 57.8
VMungo1080G0806 Vigna mungo HOM05D007153 ORTHO05D008769 2.4e-71 273.1 219 63.5
BcaC08g43538 Brassica carinata HOM05D007153 ORTHO05D008769 5.4e-71 271.9 242 61.6
BolC6t36005H Brassica oleracea HOM05D007153 ORTHO05D008769 5.4e-71 271.9 242 61.6
Phvul.005G064500 Phaseolus vulgaris HOM05D007153 ORTHO05D008769 5.4e-71 271.9 215 63.3
DCAR_017582 Daucus carota HOM05D007153 ORTHO05D008769 7.1e-71 271.6 211 69.2
Aa31LG10G1690 Aethionema arabicum HOM05D007153 ORTHO05D008769 3.5e-70 269.2 236 61.4
SGA_v2.0_scaffold130G34251 Striga asiatica HOM05D007153 ORTHO05D008769 1.3e-69 267.3 239 60.3
Potri.001G380700 Populus trichocarpa HOM05D007153 ORTHO05D008769 7.3e-68 261.5 191 70.7
Lalb_Chr01g0016241 Lupinus albus HOM05D007153 ORTHO05D008769 2.8e-67 259.6 289 52.9
Phvul.005G064600 Phaseolus vulgaris HOM05D007153 ORTHO05D008769 3.6e-67 259.2 215 61.4
Aqoxy1G01815 Aquilegia oxysepala HOM05D007153 ORTHO05D008769 3.1e-66 256.1 292 51.0
Manes.15G100200 Manihot esculenta HOM05D007153 ORTHO05D008769 2.3e-61 240.0 164 75.0
CDE04G0295 Ceratophyllum demersum HOM05D007153 ORTHO05D008769 8.7e-61 238.0 185 63.2
Cc00_g00040 Coffea canephora HOM05D007153 ORTHO05D008769 7.6e-57 224.9 210 61.0
Nitab4.5_0001140g0070 Nicotiana tabacum HOM05D007153 ORTHO05D008769 1.7e-56 223.8 217 58.1
Cpa.g.sc77.72 Carica papaya HOM05D007153 ORTHO05D008769 8.7e-53 211.5 149 75.8
EL10Ac4g08449 Beta vulgaris HOM05D007153 ORTHO05D008769 7.4e-52 208.4 158 67.7
FAN11G0553 Fragaria x ananassa HOM05D007153 ORTHO05D008769 1.8e-45 187.2 122 77.0
FAN16G1619 Fragaria x ananassa HOM05D007153 ORTHO05D008769 5.1e-45 185.7 122 77.0
Mapoly0044s0117 Marchantia polymorpha HOM05D007153 ORTHO05D008769 1.4e-42 177.6 218 43.6
Mapoly0077s0003 Marchantia polymorpha HOM05D007153 ORTHO05D008769 3.1e-42 176.4 219 43.8
Os02g0320300 Oryza sativa ssp. japonica HOM05D007153 ORTHO05D008769 1.5e-41 174.1 225 42.7
Pp3c10_20100 Physcomitrium patens HOM05D007153 ORTHO05D008769 5.8e-41 172.2 283 39.6
Zm00001eb238460 Zea mays HOM05D007153 ORTHO05D008769 7.6e-41 171.8 195 47.2
AagrBONN_evm.TU.Sc2ySwM_228.3568 Anthoceros agrestis HOM05D007153 ORTHO05D008769 6.1e-30 135.6 162 42.0
MCO15G144 Micromonas commoda HOM05D007153 ORTHO05D008769 1.6e-22 110.9 257 33.1
Sabra11G0085100 Salix brachista HOM05D007153 ORTHO05D008769 2.6e-20 103.6 100 62.0
Pp3c4_25770 Physcomitrium patens HOM05D006808 ORTHO05D008610 3.3e-20 103.2 193 32.1
Pp3c26_4040 Physcomitrium patens HOM05D006808 ORTHO05D008610 7.4e-20 102.1 193 32.1
Cre01.g007600 Chlamydomonas reinhardtii HOM05D007153 ORTHO05D008769 1.5e-17 94.4 202 34.2
AagrBONN_evm.TU.Sc2ySwM_369.397 Anthoceros agrestis HOM05D006808 ORTHO05D008769 5.0e-16 89.4 231 31.2
SMO147G0119 Selaginella moellendorffii HOM05D007153 ORTHO05D008769 5.0e-16 89.4 117 41.0
MCO16G251 Micromonas commoda HOM05D007153 ORTHO05D008769 2.5e-15 87.0 196 33.7
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 3.9e-13 79.7 203 29.6
Aqoxy4G02407 Aquilegia oxysepala HOM05D006808 ORTHO05D008610 5.2e-13 79.3 168 29.2
ATR0759G079 Amborella trichopoda HOM05D003362 ORTHO05D003783 6.7e-13 79.0 196 28.1
Lsat_1_v5_gn_8_11480 Lactuca sativa HOM05D006808 ORTHO05D008610 4.4e-12 76.3 185 27.0
Phvul.002G276500 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 5.7e-12 75.9 200 27.5
Phvul.007G008500 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 1.3e-11 74.7 200 28.0
Cre12.g517100 Chlamydomonas reinhardtii HOM05D007153 ORTHO05D008769 2.2e-11 73.9 185 27.6
CiPaw.02G198800 Carya illinoinensis HOM05D006808 ORTHO05D008610 3.7e-11 73.2 168 27.4
Psat5g069280 Pisum sativum HOM05D006808 ORTHO05D008610 6.3e-11 72.4 190 25.8
CsaV3_5G010920 Cucumis sativus L. HOM05D006808 ORTHO05D008610 8.2e-11 72.0 190 25.3
Dinv34481 Davidia involucrata HOM05D006808 ORTHO05D008610 1.4e-10 71.2 200 24.0
MELO3C020146.2 Cucumis melo HOM05D006808 ORTHO05D008610 1.8e-10 70.9 246 25.2
ClCG07G005100 Citrullus lanatus HOM05D006808 ORTHO05D008610 2.4e-10 70.5 191 25.7
Aa31LG5G9500 Aethionema arabicum HOM05D002027 ORTHO05D007016 9.1e-10 68.6 219 28.8
AagrBONN_evm.TU.Sc2ySwM_117.3318 Anthoceros agrestis HOM05D006808 ORTHO05D008610 1.2e-09 68.2 196 28.6
Sc11g0005840 Simmondsia chinensis HOM05D006808 ORTHO05D008610 1.6e-09 67.8 192 24.5
Lalb_Chr02g0143921 Lupinus albus HOM05D003362 ORTHO05D003783 3.5e-09 66.6 201 25.9
TWI53G1993 Tripterygium wilfordii HOM05D006808 ORTHO05D008610 3.5e-09 66.6 181 23.2
RcHm_v2.0_Chr6g0311981 Rosa chinensis HOM05D002027 ORTHO05D007928 4.5e-09 66.2 216 26.9
Lj7A214T27 Lonicera japonica HOM05D002027 ORTHO05D007928 5.9e-09 65.9 215 27.0
Potri.019G057800 Populus trichocarpa HOM05D006808 ORTHO05D008610 7.7e-09 65.5 172 23.3
Glyma.20G241600 Glycine max HOM05D003362 ORTHO05D003783 1.0e-08 65.1 193 25.4
Manes.07G107200 Manihot esculenta HOM05D003362 ORTHO05D003783 1.3e-08 64.7 221 25.3
Cc02_g05390 Coffea canephora HOM05D006808 ORTHO05D008610 1.7e-08 64.3 169 23.7
FvH4_2g30870 Fragaria vesca HOM05D002027 ORTHO05D007928 2.9e-08 63.5 216 25.9
Glyma.10G292200 Glycine max HOM05D003362 ORTHO05D003783 3.8e-08 63.2 193 24.9
SMO358G0139 Selaginella moellendorffii HOM05D006808 ORTHO05D008610 3.8e-08 63.2 191 25.7
Dinv22945 Davidia involucrata HOM05D002027 ORTHO05D007928 5.0e-08 62.8 217 24.9
COL.COLO4_21153 Corchorus olitorius HOM05D002027 ORTHO05D007928 1.1e-07 61.6 220 30.0
ECA234G4199 Erigeron canadensis HOM05D002027 ORTHO05D007928 1.1e-07 61.6 214 25.2
Sabra11G0084000 Salix brachista HOM05D000002 ORTHO05D001134 1.1e-07 61.6 52 63.5
PGR004G1932 Punica granatum HOM05D002027 ORTHO05D007928 1.9e-07 60.8 216 28.7
SMO200G0139 Selaginella moellendorffii HOM05D002027 ORTHO05D007928 2.5e-07 60.5 184 27.2
AagrBONN_evm.TU.Sc2ySwM_369.401 Anthoceros agrestis HOM05D006808 ORTHO05D008610 4.2e-07 59.7 146 29.5
Nn6g35623 Nelumbo nucifera HOM05D002027 ORTHO05D007928 4.2e-07 59.7 213 27.7
Medtr1g115840 Medicago truncatula HOM05D003362 ORTHO05D003783 5.5e-07 59.3 169 25.4
Peaxi162Scf00486g00315 Petunia axillaris HOM05D002027 ORTHO05D007928 5.5e-07 59.3 216 24.5
Sp4g06660 Schrenkiella parvula HOM05D002027 ORTHO05D007928 5.5e-07 59.3 210 26.7
GSVIVG01035482001 Vitis vinifera HOM05D002027 ORTHO05D007928 5.5e-07 59.3 217 25.3
VMungo0720G1901 Vigna mungo HOM05D003362 ORTHO05D003783 7.2e-07 58.9 193 27.5
A04p20340 Brassica napus HOM05D002027 ORTHO05D007928 9.4e-07 58.5 214 27.6
BraA04t17613Z Brassica rapa HOM05D002027 ORTHO05D007928 9.4e-07 58.5 214 27.6
Phvul.001G037700 Phaseolus vulgaris HOM05D002027 ORTHO05D007928 9.4e-07 58.5 185 25.9
TAR636G2984 Trochodendron aralioides HOM05D002027 ORTHO05D007928 9.4e-07 58.5 215 27.4
BolC4t27137H Brassica oleracea HOM05D002027 ORTHO05D007928 1.2e-06 58.2 214 27.6
Cpa.g.sc126.10 Carica papaya HOM05D002027 ORTHO05D007928 1.2e-06 58.2 209 25.4
PRCOL_00005489 Prasinoderma coloniale HOM05D007153 ORTHO05D008769 1.2e-06 58.2 161 29.2
AL4G18930 Arabidopsis lyrata HOM05D002027 ORTHO05D007928 2.1e-06 57.4 209 26.3
AT2G26310 Arabidopsis thaliana HOM05D002027 ORTHO05D007928 2.1e-06 57.4 209 26.3
Aqoxy7G01035 Aquilegia oxysepala HOM05D002027 ORTHO05D007928 2.7e-06 57.0 217 25.3
SHI28909 Sapria himalayana HOM05D006808 ORTHO05D008610 3.6e-06 56.6 162 22.2
TPR.G30361 Trifolium pratense HOM05D003362 ORTHO05D003783 8.0e-06 55.5 202 24.8


User provided reference genes

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