Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 3.0e-72 275.0 133 100.0
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 6.3e-38 161.0 132 62.9
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 5.3e-37 157.9 138 60.1
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 7.0e-37 157.5 139 61.9
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 7.0e-37 157.5 139 61.9
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 7.0e-37 157.5 139 59.0
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 9.1e-37 157.1 138 60.9
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 9.1e-37 157.1 137 63.5
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 2.0e-36 156.0 135 57.8
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 1.0e-35 153.7 137 60.6
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 1.0e-35 153.7 121 60.3
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 1.3e-35 153.3 137 61.3
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 1.3e-35 153.3 130 60.0
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.3e-35 153.3 130 60.0
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 2.9e-35 152.1 130 59.2
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 8.5e-35 150.6 132 54.5
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.1e-34 150.2 138 55.8
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 1.1e-34 150.2 132 59.8
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.5e-34 149.8 138 58.0
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 1.9e-34 149.4 133 57.1
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 2.5e-34 149.1 131 60.3
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 7.2e-34 147.5 142 56.3
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 7.2e-34 147.5 137 56.2
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 2.1e-33 146.0 131 59.5
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 2.7e-33 145.6 121 60.3
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 2.7e-33 145.6 116 62.9
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 2.7e-33 145.6 144 55.6
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 2.7e-33 145.6 140 57.1
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 4.7e-33 144.8 146 54.8
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 1.0e-32 143.7 116 62.9
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.4e-32 143.3 130 57.7
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 3.0e-32 142.1 136 59.6
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 3.0e-32 142.1 130 58.5
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 3.0e-32 142.1 132 59.1
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 4.0e-32 141.7 95 70.5
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 5.2e-32 141.4 121 58.7
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 5.2e-32 141.4 129 55.8
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 6.8e-32 141.0 150 53.3
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 2.0e-31 139.4 135 54.1
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 7.5e-31 137.5 134 56.0
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 9.7e-31 137.1 116 62.1
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 2.8e-30 135.6 135 53.3
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 2.8e-30 135.6 123 61.0
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 6.3e-30 134.4 136 57.4
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 6.3e-30 134.4 138 53.6
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 6.3e-30 134.4 131 53.4
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 6.3e-30 134.4 135 54.8
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 8.3e-30 134.0 137 55.5
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 8.3e-30 134.0 136 56.6
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 1.4e-29 133.3 136 54.4
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 1.4e-29 133.3 140 52.1
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 1.8e-29 132.9 138 52.9
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 1.8e-29 132.9 136 53.7
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.8e-29 132.9 134 55.2
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 1.8e-29 132.9 127 55.1
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 2.4e-29 132.5 140 51.4
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 3.1e-29 132.1 138 52.9
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 3.1e-29 132.1 122 55.7
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 3.1e-29 132.1 122 59.0
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 3.1e-29 132.1 124 60.5
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 7.0e-29 131.0 116 57.8
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 9.1e-29 130.6 138 53.6
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 1.2e-28 130.2 140 50.7
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 1.6e-28 129.8 135 52.6
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 2.0e-28 129.4 134 53.0
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 2.7e-28 129.0 135 52.6
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 2.7e-28 129.0 113 59.3
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 2.7e-28 129.0 131 51.1
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 3.5e-28 128.6 124 58.1
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 3.5e-28 128.6 138 52.2
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 3.5e-28 128.6 140 50.0
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 4.5e-28 128.3 135 52.6
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 4.5e-28 128.3 119 56.3
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 4.5e-28 128.3 132 53.0
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 7.7e-28 127.5 138 52.9
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 7.7e-28 127.5 138 52.9
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 1.3e-27 126.7 130 53.8
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 1.7e-27 126.3 133 51.1
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 2.2e-27 125.9 134 52.2
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 2.2e-27 125.9 132 53.0
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 6.5e-27 124.4 134 46.3
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 8.5e-27 124.0 121 53.7
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 1.5e-26 123.2 134 52.2
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 5.5e-26 121.3 134 53.0
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 5.5e-26 121.3 133 50.4
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 7.2e-26 120.9 137 49.6
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 9.4e-26 120.6 135 51.9
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 1.6e-25 119.8 135 51.1
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.6e-25 119.8 119 49.6
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 1.6e-25 119.8 133 51.9
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 4.7e-25 118.2 118 53.4
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 8.0e-25 117.5 119 51.3
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 8.0e-25 117.5 119 51.3
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 8.0e-25 117.5 131 45.8
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 1.0e-24 117.1 185 42.2
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.4e-24 116.7 113 54.9
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 1.8e-24 116.3 132 46.2
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 2.3e-24 115.9 120 52.5
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 2.3e-24 115.9 135 50.4
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 2.3e-24 115.9 134 48.5
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 2.3e-24 115.9 119 52.1
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 2.3e-24 115.9 67 74.6
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 4.0e-24 115.2 84 66.7
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 4.0e-24 115.2 128 46.1
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 6.8e-24 114.4 117 49.6
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.5e-23 113.2 153 45.8
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 2.6e-23 112.5 136 47.1
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 3.4e-23 112.1 109 52.3
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 3.4e-23 112.1 107 60.7
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 5.7e-23 111.3 129 46.5
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 5.7e-23 111.3 113 53.1
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 2.2e-22 109.4 72 69.4
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 4.8e-22 108.2 62 75.8
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 6.3e-22 107.8 135 46.7
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 1.4e-21 106.7 105 58.1
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 1.8e-21 106.3 62 72.6
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 1.8e-21 106.3 129 51.9
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 1.8e-21 106.3 129 51.9
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 3.1e-21 105.5 112 50.0
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 5.4e-21 104.8 112 48.2
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 5.4e-21 104.8 59 78.0
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 5.4e-21 104.8 114 49.1
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 2.0e-20 102.8 107 57.0
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 7.7e-20 100.9 166 40.4
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 1.3e-19 100.1 111 55.9
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 8.6e-19 97.4 107 54.2
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 6.1e-17 91.3 136 41.9
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 6.1e-17 91.3 113 46.9
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 1.8e-16 89.7 76 57.9
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 5.2e-16 88.2 50 72.0
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 5.2e-16 88.2 106 45.3
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 8.9e-16 87.4 60 61.7
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 2.0e-15 86.3 52 73.1
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 4.4e-15 85.1 115 47.0
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 5.7e-15 84.7 50 70.0
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 7.5e-15 84.3 109 52.3
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 1.7e-14 83.2 79 55.7
Nitab4.5_0000014g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 5.9e-12 74.7 131 37.4
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 1.0e-11 73.9 57 68.4
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 2.3e-11 72.8 43 74.4
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 3.9e-11 72.0 49 59.2
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 3.3e-10 68.9 85 47.1
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 4.3e-10 68.6 103 48.5
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 4.7e-09 65.1 70 51.4
COL.COLO4_27990 Corchorus olitorius HOM05D004542 ORTHO05D005380 1.4e-08 63.5 83 53.0
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 4.0e-08 62.0 101 41.6
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 1.2e-07 60.5 96 40.6
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 2.0e-07 59.7 37 73.0
PGSC0003DMG400005564 Solanum tuberosum HOM05D004542 ORTHO05D005380 7.5e-07 57.8 83 48.2
SEGI_34151 Sequoiadendron giganteum HOM05D004542 ORTHO05D005380 9.8e-07 57.4 40 67.5
CBR_g39054 Chara braunii HOM05D004542 ORTHO05D005380 1.7e-06 56.6 85 38.8
vmacro01351 Vaccinium macrocarpon HOM05D004542 ORTHO05D005380 2.2e-06 56.2 89 44.9


User provided reference genes

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