Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2546 Punica granatum HOM05D002914 ORTHO05D003196 5.2e-72 274.2 135 100.0
TPR.G40737 Trifolium pratense HOM05D002914 ORTHO05D003196 3.4e-23 112.1 132 48.5
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 1.3e-22 110.2 95 56.8
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 3.8e-22 108.6 121 51.2
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 6.0e-20 101.3 124 49.2
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 1.0e-19 100.5 116 47.4
ClCG08G015580 Citrullus lanatus HOM05D002914 ORTHO05D003196 1.8e-19 99.8 124 49.2
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 1.8e-19 99.8 119 47.1
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 1.8e-19 99.8 112 48.2
CsaV3_2G028190 Cucumis sativus L. HOM05D002914 ORTHO05D003196 3.9e-19 98.6 115 51.3
Lj5P206T48 Lonicera japonica HOM05D002914 ORTHO05D003196 3.9e-19 98.6 127 44.1
Lalb_Chr23g0266911 Lupinus albus HOM05D002914 ORTHO05D003196 5.1e-19 98.2 127 44.1
Potri.014G035400 Populus trichocarpa HOM05D002914 ORTHO05D003196 8.7e-19 97.4 94 53.2
Lj1g0002449 Lotus japonicus HOM05D002914 ORTHO05D003196 1.5e-18 96.7 131 42.7
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 1.5e-18 96.7 75 62.7
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 2.5e-18 95.9 87 52.9
MELO3C010895.2 Cucumis melo HOM05D002914 ORTHO05D003196 5.6e-18 94.7 83 62.7
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 5.6e-18 94.7 118 48.3
Sed0019897 Sechium edule HOM05D002914 ORTHO05D003196 5.6e-18 94.7 112 50.0
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 7.4e-18 94.4 116 43.1
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 7.4e-18 94.4 117 47.0
FvH4_2g35030 Fragaria vesca HOM05D002914 ORTHO05D003196 1.3e-17 93.6 114 50.9
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 1.6e-17 93.2 89 49.4
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 2.8e-17 92.4 89 55.1
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.8e-17 92.4 133 42.1
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 3.6e-17 92.0 86 51.2
FAN15G3578 Fragaria x ananassa HOM05D002914 ORTHO05D003196 3.6e-17 92.0 114 49.1
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 4.8e-17 91.7 115 45.2
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 4.8e-17 91.7 110 48.2
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 6.2e-17 91.3 118 44.1
CANSAT25G0897 Cannabis sativa HOM05D002914 ORTHO05D003196 1.1e-16 90.5 86 57.0
FAN20G2785 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.1e-16 90.5 114 48.2
HanXRQChr16g0509571 Helianthus annuus HOM05D002914 ORTHO05D003196 1.4e-16 90.1 125 44.0
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 1.8e-16 89.7 79 54.4
Sopen01g050550 Solanum pennellii HOM05D002914 ORTHO05D003196 1.8e-16 89.7 130 40.8
PGSC0003DMG400025804 Solanum tuberosum HOM05D002914 ORTHO05D003196 2.4e-16 89.4 130 40.8
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 3.1e-16 89.0 118 42.4
CDE02G0277 Ceratophyllum demersum HOM05D002914 ORTHO05D003196 5.3e-16 88.2 127 40.2
Gohir.A03G191200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.3e-16 88.2 121 44.6
FAN27G2590 Fragaria x ananassa HOM05D002914 ORTHO05D003196 6.9e-16 87.8 104 49.0
Nitab4.5_0000876g0210 Nicotiana tabacum HOM05D002914 ORTHO05D003196 6.9e-16 87.8 131 40.5
HanXRQChr04g0128331 Helianthus annuus HOM05D002914 ORTHO05D003196 9.0e-16 87.4 122 43.4
TWI36G0119 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 9.0e-16 87.4 119 42.9
Nitab4.5_0000876g0190 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.2e-15 87.0 99 47.5
Solyc01g108330.2 Solanum lycopersicum HOM05D002914 ORTHO05D003196 1.5e-15 86.7 130 40.0
Cpa.g.sc376.2 Carica papaya HOM05D002914 ORTHO05D003196 2.0e-15 86.3 79 54.4
QL02p006168 Quercus lobata HOM05D002914 ORTHO05D003196 2.0e-15 86.3 124 41.1
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 2.6e-15 85.9 83 50.6
SGA_v2.0_scaffold58G20610 Striga asiatica HOM05D002914 ORTHO05D003196 2.6e-15 85.9 87 50.6
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 3.4e-15 85.5 80 52.5
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 4.5e-15 85.1 133 42.1
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 4.5e-15 85.1 101 45.5
Oeu003691.1 Olea europaea HOM05D002914 ORTHO05D003196 7.6e-15 84.3 104 44.2
VMungo0251G3532 Vigna mungo HOM05D002914 ORTHO05D003196 7.6e-15 84.3 107 47.7
Aa31LG5G9350 Aethionema arabicum HOM05D002914 ORTHO05D003196 9.9e-15 84.0 130 43.8
Glyma.07G210000 Glycine max HOM05D002914 ORTHO05D003196 9.9e-15 84.0 88 48.9
Sed0007891 Sechium edule HOM05D002914 ORTHO05D003196 1.7e-14 83.2 129 45.7
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.9e-14 81.6 70 54.3
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 4.9e-14 81.6 86 47.7
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 4.9e-14 81.6 82 51.2
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 4.9e-14 81.6 82 51.2
CDE01G0545 Ceratophyllum demersum HOM05D000767 ORTHO05D003196 6.4e-14 81.3 125 37.6
Gorai.005G240100 Gossypium raimondii HOM05D002914 ORTHO05D003196 6.4e-14 81.3 121 43.8
THA.LOC104803788 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 6.4e-14 81.3 102 45.1
TAR376G1047 Trochodendron aralioides HOM05D002914 ORTHO05D003196 6.4e-14 81.3 115 41.7
Oeu003693.1 Olea europaea HOM05D002914 ORTHO05D003196 1.1e-13 80.5 60 63.3
Oeu010582.1 Olea europaea HOM05D002914 ORTHO05D003196 1.1e-13 80.5 60 63.3
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 1.4e-13 80.1 82 45.1
Gohir.D02G212150 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.4e-13 80.1 122 41.8
Oeu013680.1 Olea europaea HOM05D002914 ORTHO05D003196 1.4e-13 80.1 122 39.3
Sed0010504 Sechium edule HOM05D002914 ORTHO05D003196 1.4e-13 80.1 82 43.9
HPP92_003444 Vanilla planifolia HOM05D002914 ORTHO05D003196 1.4e-13 80.1 69 50.7
Cfa005429 Carpinus fangiana HOM05D002914 ORTHO05D003196 1.9e-13 79.7 116 41.4
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.4e-13 79.3 86 46.5
Manes.05G170100 Manihot esculenta HOM05D002914 ORTHO05D003196 2.4e-13 79.3 118 42.4
Sc15g0006440 Simmondsia chinensis HOM05D002914 ORTHO05D003196 2.4e-13 79.3 62 62.9
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 3.2e-13 79.0 82 43.9
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 3.2e-13 79.0 133 33.8
Gohir.A06G015600 Gossypium hirsutum HOM05D002914 ORTHO05D003196 3.2e-13 79.0 61 55.7
Gorai.010G016300 Gossypium raimondii HOM05D002914 ORTHO05D003196 3.2e-13 79.0 61 55.7
RcHm_v2.0_Chr6g0306971 Rosa chinensis HOM05D002914 ORTHO05D003196 3.2e-13 79.0 126 40.5
Potri.004G144400 Populus trichocarpa HOM05D002914 ORTHO05D003196 4.2e-13 78.6 105 42.9
Ciclev10002811m.g Citrus clementina HOM05D002914 ORTHO05D003196 7.1e-13 77.8 101 46.5
Lalb_Chr09g0328151 Lupinus albus HOM05D002914 ORTHO05D003196 7.1e-13 77.8 64 56.2
Nitab4.5_0002462g0040 Nicotiana tabacum HOM05D002914 ORTHO05D003196 7.1e-13 77.8 75 56.0
EL10Ac9g21822 Beta vulgaris HOM05D002914 ORTHO05D003196 9.3e-13 77.4 57 52.6
Prupe.1G441900 Prunus persica HOM05D002914 ORTHO05D003196 9.3e-13 77.4 128 42.2
TAR628G0868 Trochodendron aralioides HOM05D002914 ORTHO05D003196 9.3e-13 77.4 136 40.4
AT2G26520 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 1.2e-12 77.0 129 36.4
Eucgr.I01175 Eucalyptus grandis HOM05D002914 ORTHO05D003196 2.1e-12 76.3 104 41.3
ATR0225G004 Amborella trichopoda HOM05D002914 ORTHO05D003196 3.5e-12 75.5 129 36.4
AL4G19370 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 6.0e-12 74.7 134 37.3
Peaxi162Scf00016g00161 Petunia axillaris HOM05D002914 ORTHO05D003196 6.0e-12 74.7 70 54.3
Carub.0004s0669 Capsella rubella HOM05D002914 ORTHO05D003196 1.0e-11 73.9 134 37.3
Ah.01g020080 Amaranthus hybridus HOM05D002914 ORTHO05D003196 1.8e-11 73.2 82 42.7
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 1.8e-11 73.2 124 34.7
Aqoxy6G00878 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 2.3e-11 72.8 75 49.3
TAR623G0040 Trochodendron aralioides HOM05D002914 ORTHO05D003196 2.3e-11 72.8 83 43.4
COL.COLO4_26446 Corchorus olitorius HOM05D002914 ORTHO05D003196 3.0e-11 72.4 76 51.3
Potri.009G106300 Populus trichocarpa HOM05D002914 ORTHO05D003196 3.9e-11 72.0 102 40.2
Prupe.8G116500 Prunus persica HOM05D002914 ORTHO05D003196 6.7e-11 71.2 80 43.8
Ah.05g168910 Amaranthus hybridus HOM05D002914 ORTHO05D003196 1.5e-10 70.1 80 45.0
HPP92_007074 Vanilla planifolia HOM05D002914 ORTHO05D003196 4.3e-10 68.6 102 34.3
CiPaw.09G037100 Carya illinoinensis HOM05D002914 ORTHO05D003196 5.6e-10 68.2 93 38.7
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 5.6e-10 68.2 56 55.4
Phvul.001G135000 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 5.6e-10 68.2 90 37.8
CiPaw.06G141400 Carya illinoinensis HOM05D002914 ORTHO05D003196 7.4e-10 67.8 46 65.2
Sc08g0000120 Simmondsia chinensis HOM05D002914 ORTHO05D003196 7.4e-10 67.8 91 42.9
SGA_v2.0_scaffold105G30420 Striga asiatica HOM05D002914 ORTHO05D003196 9.6e-10 67.4 95 35.8
CSS0032433 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.3e-09 67.0 85 40.0
Phvul.003G294100 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 1.3e-09 67.0 120 37.5
VMungo1383G1568 Vigna mungo HOM05D002914 ORTHO05D003196 2.1e-09 66.2 91 38.5
unitig_699.g19875 Utricularia gibba HOM05D002914 ORTHO05D003196 2.8e-09 65.9 76 48.7
Dinv18053 Davidia involucrata HOM05D002914 ORTHO05D003196 3.7e-09 65.5 83 39.8
Oeu007255.1 Olea europaea HOM05D002914 ORTHO05D003196 3.7e-09 65.5 90 41.1
arahy.Tifrunner.gnm1.ann1.2E3RSG Arachis hypogaea HOM05D002914 ORTHO05D003196 4.8e-09 65.1 112 37.5
Gohir.A09G123100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.8e-09 65.1 86 38.4
Gohir.D09G120100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.8e-09 65.1 86 38.4
Gorai.006G137500 Gossypium raimondii HOM05D002914 ORTHO05D003196 4.8e-09 65.1 86 38.4
Medtr7g091830 Medicago truncatula HOM05D002914 ORTHO05D003196 6.2e-09 64.7 78 37.2
arahy.Tifrunner.gnm1.ann1.ZME7HS Arachis hypogaea HOM05D002914 ORTHO05D003196 8.2e-09 64.3 76 44.7
Ca_18662_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 8.2e-09 64.3 107 38.3
Nn2g15303 Nelumbo nucifera HOM05D002914 ORTHO05D003196 8.2e-09 64.3 82 36.6
Nn5g30169 Nelumbo nucifera HOM05D002914 ORTHO05D003196 8.2e-09 64.3 95 41.1
Thecc.05G158000 Theobroma cacao HOM05D002914 ORTHO05D003196 8.2e-09 64.3 83 38.6
Duzib093G1261 Durio zibethinus HOM05D002914 ORTHO05D003196 1.1e-08 63.9 90 37.8
Solyc04g015540.1 Solanum lycopersicum HOM05D002914 ORTHO05D003196 1.1e-08 63.9 80 40.0
Sopen04g007610 Solanum pennellii HOM05D002914 ORTHO05D003196 1.1e-08 63.9 80 40.0
FAN20G0574 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.4e-08 63.5 78 41.0
Glyma.02G134900 Glycine max HOM05D002914 ORTHO05D003196 1.4e-08 63.5 83 43.4
Glyma.19G140500 Glycine max HOM05D002914 ORTHO05D003196 1.4e-08 63.5 90 37.8
Lalb_Chr05g0219001 Lupinus albus HOM05D002914 ORTHO05D003196 1.8e-08 63.2 120 35.8
Manes.15G143200 Manihot esculenta HOM05D002914 ORTHO05D003196 1.8e-08 63.2 79 41.8
Nitab4.5_0005892g0010 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.4e-08 62.8 84 38.1
PSO170G6047 Papaver somniferum HOM05D002914 ORTHO05D003196 2.4e-08 62.8 48 60.4
Peaxi162Scf00493g00035 Petunia axillaris HOM05D002914 ORTHO05D003196 2.4e-08 62.8 84 40.5
FAN15G1103 Fragaria x ananassa HOM05D002914 ORTHO05D003196 3.1e-08 62.4 41 63.4
SalBow6G6648 Salvia bowleyana HOM05D002914 ORTHO05D003196 3.1e-08 62.4 49 55.1
Thecc.02G096100 Theobroma cacao HOM05D002914 ORTHO05D003196 3.1e-08 62.4 74 43.2
TPR.G27766 Trifolium pratense HOM05D002914 ORTHO05D003196 3.1e-08 62.4 84 35.7
CiPaw.05G054900 Carya illinoinensis HOM05D002914 ORTHO05D003196 4.0e-08 62.0 91 39.6
FvH4_2g06840 Fragaria vesca HOM05D002914 ORTHO05D003196 4.0e-08 62.0 79 39.2
FAN24G0092 Fragaria x ananassa HOM05D002914 ORTHO05D003196 4.0e-08 62.0 79 39.2
Sabra09G0081200 Salix brachista HOM05D002914 ORTHO05D003196 4.0e-08 62.0 120 36.7
Psat3g072240 Pisum sativum HOM05D002914 ORTHO05D003196 5.3e-08 61.6 78 37.2
Cpa.g.sc62.45 Carica papaya HOM05D002914 ORTHO05D003196 6.9e-08 61.2 67 47.8
Lj4g0007898 Lotus japonicus HOM05D002914 ORTHO05D003196 6.9e-08 61.2 85 43.5
QL11p038331 Quercus lobata HOM05D002914 ORTHO05D003196 6.9e-08 61.2 42 61.9
Lalb_Chr20g0110761 Lupinus albus HOM05D002914 ORTHO05D003196 9.0e-08 60.8 80 38.8
Nn7g36239 Nelumbo nucifera HOM05D002914 ORTHO05D003196 9.0e-08 60.8 84 38.1
CSS0030933 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.2e-07 60.5 48 54.2
CSS0032479 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.2e-07 60.5 48 54.2
Gohir.A01G132111 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.2e-07 60.5 64 45.3
PGSC0003DMG400027270 Solanum tuberosum HOM05D002914 ORTHO05D003196 1.2e-07 60.5 80 38.8
CANSAT80G1635 Cannabis sativa HOM05D002914 ORTHO05D003196 1.5e-07 60.1 86 40.7
Lsat_1_v5_gn_5_161660 Lactuca sativa HOM05D002914 ORTHO05D003196 1.5e-07 60.1 63 44.4
PGR142G0527 Punica granatum HOM05D002914 ORTHO05D003196 1.5e-07 60.1 80 43.8
COL.COLO4_11718 Corchorus olitorius HOM05D002914 ORTHO05D003196 2.0e-07 59.7 48 54.2
COL.COLO4_28237 Corchorus olitorius HOM05D002914 ORTHO05D003196 2.0e-07 59.7 88 36.4
Gorai.013G040900 Gossypium raimondii HOM05D002914 ORTHO05D003196 2.0e-07 59.7 44 56.8
Gohir.A13G037800 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.6e-07 59.3 79 38.0
Gohir.D13G036200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.6e-07 59.3 79 38.0
Manes.09G023600 Manihot esculenta HOM05D002914 ORTHO05D003196 3.4e-07 58.9 83 37.3
Nn1g05872 Nelumbo nucifera HOM05D002914 ORTHO05D003196 3.4e-07 58.9 116 34.5
Prupe.7G063700 Prunus persica HOM05D002914 ORTHO05D003196 3.4e-07 58.9 83 38.6
Oeu000823.1 Olea europaea HOM05D002914 ORTHO05D003196 4.5e-07 58.5 88 37.5
Sabra04G0095900 Salix brachista HOM05D002914 ORTHO05D003196 5.8e-07 58.2 118 33.1
Lsat_1_v5_gn_9_28661 Lactuca sativa HOM05D002914 ORTHO05D003196 7.6e-07 57.8 82 37.8
Lj1g0015891 Lotus japonicus HOM05D002914 ORTHO05D003196 7.6e-07 57.8 78 33.3
Potri.006G052500 Populus trichocarpa HOM05D002914 ORTHO05D003196 7.6e-07 57.8 68 38.2
Aqoxy2G00187 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 1.0e-06 57.4 83 34.9
Hma1.2p1_1847F.1_g305210 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 1.0e-06 57.4 85 36.5
Psat7g121600 Pisum sativum HOM05D002914 ORTHO05D003196 1.0e-06 57.4 40 57.5
MD14G1070500 Malus domestica HOM05D002914 ORTHO05D003196 1.3e-06 57.0 105 33.3
TWI74G1608 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 1.3e-06 57.0 69 40.6
BcaB02g08314 Brassica carinata HOM05D002914 ORTHO05D003196 1.7e-06 56.6 69 42.0
Ca_08467_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 1.7e-06 56.6 66 37.9
ATR0730G198 Amborella trichopoda HOM05D007960 ORTHO05D010026 2.2e-06 56.2 81 40.7
CSS0043526 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 2.2e-06 56.2 92 40.2
Gorai.002G147700 Gossypium raimondii HOM05D002914 ORTHO05D003196 2.2e-06 56.2 64 40.6
Atru.chr1.1072 Acer truncatum HOM05D002914 ORTHO05D003196 2.9e-06 55.8 64 40.6
A04p03090 Brassica napus HOM05D002914 ORTHO05D003196 4.9e-06 55.1 93 32.3
BraA04t16032Z Brassica rapa HOM05D002914 ORTHO05D003196 4.9e-06 55.1 93 32.3
ATR0332G006 Amborella trichopoda HOM05D002914 ORTHO05D003196 8.4e-06 54.3 86 32.6
Gohir.D01G121050 Gossypium hirsutum HOM05D002914 ORTHO05D003196 8.4e-06 54.3 64 39.1


User provided reference genes

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