Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 1.0e-152 543.5 294 100.0
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 8.4e-67 258.1 342 44.4
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 3.5e-65 252.7 274 50.4
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 7.8e-65 251.5 287 48.8
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 2.3e-64 250.0 267 50.6
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 5.6e-63 245.4 345 42.6
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 1.4e-61 240.7 335 44.2
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 1.8e-61 240.4 317 45.1
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 6.9e-61 238.4 340 43.2
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 6.9e-61 238.4 338 42.9
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 2.0e-60 236.9 274 47.1
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 2.6e-60 236.5 345 42.3
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 9.9e-60 234.6 223 55.2
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 9.9e-60 234.6 340 42.4
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 1.3e-59 234.2 276 47.1
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 4.9e-59 232.3 335 42.4
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 1.1e-58 231.1 347 42.1
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 1.1e-58 231.1 235 52.3
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 2.4e-58 229.9 265 48.3
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 7.1e-58 228.4 238 50.4
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 1.2e-57 227.6 289 45.7
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.6e-57 227.3 238 50.4
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 3.5e-57 226.1 369 41.2
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 4.6e-57 225.7 347 41.5
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 4.6e-57 225.7 300 44.0
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 6.0e-57 225.3 346 40.8
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 6.0e-57 225.3 288 46.5
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 1.0e-56 224.6 211 53.6
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 3.9e-56 222.6 227 49.3
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 6.7e-56 221.9 289 44.6
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 6.7e-56 221.9 226 50.9
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 8.7e-56 221.5 345 41.4
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 1.1e-55 221.1 212 53.8
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 1.1e-55 221.1 293 45.1
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 1.1e-55 221.1 212 53.8
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 1.1e-55 221.1 212 53.3
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 1.1e-55 221.1 293 45.1
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 1.1e-55 221.1 217 52.1
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 1.5e-55 220.7 338 39.9
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 1.5e-55 220.7 269 46.8
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 1.9e-55 220.3 337 40.7
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 1.9e-55 220.3 322 40.1
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 3.3e-55 219.5 271 46.5
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 3.3e-55 219.5 284 47.5
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 4.3e-55 219.2 284 45.1
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 4.3e-55 219.2 337 41.2
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 7.4e-55 218.4 229 49.8
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 7.4e-55 218.4 228 49.6
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 9.6e-55 218.0 205 55.6
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 1.3e-54 217.6 335 41.2
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 1.6e-54 217.2 373 38.1
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 3.6e-54 216.1 270 47.0
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 6.2e-54 215.3 229 49.8
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 8.1e-54 214.9 229 49.8
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 8.1e-54 214.9 230 50.0
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 1.1e-53 214.5 265 46.0
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 1.4e-53 214.2 274 46.0
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 1.8e-53 213.8 299 43.1
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 2.4e-53 213.4 346 41.3
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 5.3e-53 212.2 288 43.4
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 9.0e-53 211.5 230 50.0
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 1.5e-52 210.7 261 46.7
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 1.5e-52 210.7 264 44.7
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 2.0e-52 210.3 274 43.8
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 4.9e-51 205.7 235 47.2
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.4e-50 204.1 199 53.8
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 2.4e-50 203.4 292 41.8
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 2.4e-50 203.4 227 48.5
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 2.4e-50 203.4 342 39.2
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 4.2e-50 202.6 337 40.9
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 1.6e-49 200.7 195 54.9
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 2.1e-49 200.3 222 47.7
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 3.5e-49 199.5 270 45.2
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 3.5e-49 199.5 270 45.2
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 1.3e-48 197.6 272 44.5
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 3.9e-48 196.1 267 40.8
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 6.7e-48 195.3 197 51.8
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 1.5e-47 194.1 211 49.3
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 2.5e-47 193.4 209 46.9
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 9.6e-47 191.4 221 47.1
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 9.0e-45 184.9 312 39.1
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.6e-44 183.3 297 40.4
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 4.5e-44 182.6 261 43.7
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.3e-43 181.0 263 41.1
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 2.2e-43 180.3 230 46.1
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 7.1e-42 175.3 325 36.0
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 7.1e-42 175.3 196 46.4
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 6.0e-41 172.2 189 48.1
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 5.1e-40 169.1 233 43.8
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 3.3e-39 166.4 209 45.0
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 4.3e-39 166.0 218 41.7
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 4.3e-39 166.0 209 44.5
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 1.6e-38 164.1 226 45.1
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.1e-37 161.4 341 36.7
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 5.3e-37 159.1 225 42.2
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.5e-36 157.5 343 35.9
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.6e-36 156.8 216 43.5
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 3.4e-36 156.4 144 50.0
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.9e-34 150.6 200 43.5
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 2.5e-34 150.2 211 41.7
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.2e-33 147.9 278 33.8
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.6e-33 147.5 219 42.0
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 7.9e-33 145.2 331 32.0
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 3.0e-32 143.3 197 42.1
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 3.0e-32 143.3 279 33.3
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 4.8e-30 136.0 296 33.4
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 6.3e-30 135.6 301 33.6
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 8.2e-30 135.2 148 46.6
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.4e-29 133.7 317 34.1
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 3.4e-28 129.8 233 39.9
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 1.3e-27 127.9 307 31.9
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 1.3e-27 127.9 352 33.5
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 1.7e-27 127.5 221 37.6
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 1.7e-27 127.5 124 53.2
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 1.9e-26 124.0 219 36.1
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 4.2e-26 122.9 210 35.7
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 4.2e-26 122.9 119 53.8
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 4.6e-25 119.4 128 50.0
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 1.0e-24 118.2 133 42.9
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 1.8e-24 117.5 195 36.4
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 1.8e-24 117.5 210 34.8
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 1.8e-24 117.5 133 42.9
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 2.3e-24 117.1 202 42.6
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 3.9e-24 116.3 115 45.2
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 5.1e-24 115.9 196 36.7
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 6.7e-24 115.5 210 37.1
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 6.7e-24 115.5 131 48.9
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 6.7e-24 115.5 93 58.1
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 3.3e-23 113.2 139 46.8
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 2.2e-22 110.5 272 30.9
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 2.2e-22 110.5 133 46.6
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 5.3e-21 105.9 196 36.2
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 6.9e-21 105.5 124 46.8
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 4.5e-20 102.8 279 29.7
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 7.7e-20 102.1 74 59.5
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 1.0e-19 101.7 222 32.0
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 1.7e-19 100.9 210 32.4
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 6.7e-16 89.0 97 43.3
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 3.3e-15 86.7 67 56.7
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 5.9e-12 75.9 75 50.7
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 2.5e-10 70.5 101 38.6
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 1.2e-09 68.2 72 41.7
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 3.6e-09 66.6 42 69.0
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.3e-08 63.9 43 62.8
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 1.2e-07 61.6 131 34.4
RcHm_v2.0_Chr6g0263661 Rosa chinensis HOM05D004908 ORTHO05D006418 7.5e-07 58.9 41 63.4


User provided reference genes

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