Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 6.6e-232 807.0 399 100.0
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 9.8e-119 431.0 349 60.5
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 1.3e-118 430.6 349 60.5
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 1.8e-117 426.8 348 60.3
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 9.2e-117 424.5 348 61.2
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 9.2e-117 424.5 348 60.1
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 2.0e-116 423.3 348 60.1
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 3.5e-116 422.5 359 58.5
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 3.5e-116 422.5 349 59.9
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 3.5e-116 422.5 348 59.5
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 7.8e-116 421.4 349 60.2
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 1.7e-115 420.2 342 60.8
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 1.5e-114 417.2 396 54.5
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 2.5e-114 416.4 396 54.5
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 1.2e-113 414.1 401 53.6
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 4.7e-113 412.1 348 58.6
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 3.1e-112 409.5 360 55.8
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 2.6e-111 406.4 348 56.0
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 9.8e-111 404.4 348 57.2
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 1.7e-110 403.7 350 57.4
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 3.7e-110 402.5 373 55.0
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 1.9e-109 400.2 350 57.4
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 4.1e-109 399.1 348 56.6
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 5.4e-109 398.7 348 55.2
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 7.0e-109 398.3 350 56.6
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 2.0e-108 396.7 335 57.3
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 2.7e-108 396.4 348 56.3
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 1.0e-107 394.4 348 55.7
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 2.3e-107 393.3 348 55.5
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 2.3e-107 393.3 334 57.5
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 6.6e-107 391.7 348 56.3
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 3.3e-106 389.4 332 56.9
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 3.3e-106 389.4 349 55.9
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 7.3e-106 388.3 345 55.1
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 9.5e-106 387.9 347 55.0
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 9.5e-106 387.9 303 62.7
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 1.2e-105 387.5 349 56.7
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 1.2e-105 387.5 348 56.9
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 1.6e-105 387.1 348 55.5
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 2.1e-105 386.7 347 55.0
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 4.7e-105 385.6 347 54.5
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 8.1e-105 384.8 353 54.1
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 1.8e-104 383.6 335 56.4
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 6.8e-104 381.7 363 52.9
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 1.5e-103 380.6 351 54.1
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 3.4e-103 379.4 378 51.3
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 5.8e-103 378.6 334 54.8
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 7.5e-103 378.3 328 58.5
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 1.7e-102 377.1 319 56.7
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 2.2e-102 376.7 372 51.9
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 3.7e-102 375.9 329 56.2
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 1.1e-101 374.4 348 52.6
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 3.2e-101 372.9 348 52.3
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 5.4e-101 372.1 348 53.2
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 7.1e-101 371.7 318 56.0
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 7.1e-101 371.7 327 55.0
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 1.2e-100 370.9 394 49.0
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 1.6e-100 370.5 356 52.0
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 2.1e-100 370.2 348 52.0
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 2.1e-100 370.2 348 52.9
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 2.7e-100 369.8 334 52.7
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 4.6e-100 369.0 395 48.4
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 1.3e-99 367.5 332 54.2
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 1.5e-98 364.0 334 52.7
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 2.1e-97 360.1 315 55.9
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 4.7e-97 359.0 334 52.4
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 8.1e-97 358.2 373 49.6
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 1.1e-96 357.8 290 60.0
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 4.4e-95 352.4 347 51.0
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 5.8e-95 352.1 341 50.7
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 2.1e-92 343.6 348 51.1
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 6.0e-92 342.0 347 50.1
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 1.0e-91 341.3 338 49.1
Medtr5g068170 Medicago truncatula HOM05D007036 ORTHO05D008885 1.7e-91 340.5 330 52.4
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 1.7e-91 340.5 333 51.4
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 3.0e-91 339.7 319 53.0
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 3.0e-91 339.7 348 49.1
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 1.5e-90 337.4 348 50.3
MD13G1233100 Malus domestica HOM05D007036 ORTHO05D008885 1.6e-89 334.0 388 47.9
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 2.8e-89 333.2 250 64.4
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 6.2e-89 332.0 347 49.3
SGA_v2.0_scaffold318G48469 Striga asiatica HOM05D007036 ORTHO05D008885 5.2e-88 328.9 341 49.0
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 8.9e-88 328.2 236 66.5
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 4.4e-87 325.9 336 49.1
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 1.4e-85 320.9 348 48.6
CSS0018855 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 2.4e-85 320.1 332 49.4
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 2.4e-85 320.1 364 46.7
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 2.7e-84 316.6 245 61.2
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 1.0e-83 314.7 336 48.2
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 7.3e-82 308.5 237 63.3
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 4.0e-80 302.8 336 46.4
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 2.0e-79 300.4 235 61.7
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 1.3e-78 297.7 252 57.1
Ca_04679_v3 Cicer arietinum L. HOM05D007036 ORTHO05D008885 1.6e-76 290.8 222 62.6
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 4.6e-76 289.3 212 64.6
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 4.6e-76 289.3 212 64.6
COL.COLO4_04221 Corchorus olitorius HOM05D007036 ORTHO05D008885 5.6e-74 282.3 337 46.9
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 1.4e-72 277.7 297 49.5
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 1.7e-70 270.8 301 46.5
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 1.1e-66 258.1 297 46.5
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 6.9e-64 248.8 203 59.6
COL.COLO4_06173 Corchorus olitorius HOM05D007036 ORTHO05D008885 5.8e-63 245.7 307 45.3
Lj5A765T51 Lonicera japonica HOM05D007036 ORTHO05D008885 1.3e-41 174.9 182 47.8
Oeu028822.1 Olea europaea HOM05D007036 ORTHO05D008885 2.2e-41 174.1 153 53.6
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 2.8e-41 173.7 201 47.3
vmacro20769 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 3.4e-39 166.8 173 50.9
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 1.1e-34 151.8 204 39.7
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 1.1e-32 145.2 171 46.8
Dinv26474 Davidia involucrata HOM05D007036 ORTHO05D008885 5.2e-27 126.3 206 34.5
AagrBONN_evm.TU.Sc2ySwM_228.1431 Anthoceros agrestis HOM05D007036 ORTHO05D008885 5.3e-24 116.3 168 38.7
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 2.9e-22 110.5 253 31.2
Gohir.A09G207900 Gossypium hirsutum HOM05D007897 ORTHO05D010061 1.2e-18 98.6 259 27.8
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 3.7e-17 93.6 179 34.1
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 1.8e-16 91.3 202 32.2
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 1.2e-15 88.6 199 32.7
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 2.0e-15 87.8 199 32.2
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 2.7e-15 87.4 199 30.2
Haze_11681 Corylus avellana HOM05D007897 ORTHO05D010061 3.5e-15 87.0 189 32.3
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 3.5e-15 87.0 259 29.0
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 3.5e-15 87.0 192 32.8
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 3.5e-15 87.0 200 32.5
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 4.5e-15 86.7 185 32.4
COL.COLO4_35959 Corchorus olitorius HOM05D007897 ORTHO05D010061 7.7e-15 85.9 223 27.8
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 7.7e-15 85.9 193 29.0
Cfa008662 Carpinus fangiana HOM05D007897 ORTHO05D010061 1.7e-14 84.7 192 32.3
Eucgr.L00640 Eucalyptus grandis HOM05D007897 ORTHO05D010061 1.7e-14 84.7 239 29.3
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 1.7e-14 84.7 189 32.8
Thecc.04G191100 Theobroma cacao HOM05D007897 ORTHO05D010061 1.1e-13 82.0 198 29.3
AT4G14190 Arabidopsis thaliana HOM05D007897 ORTHO05D010061 1.5e-13 81.6 182 34.6
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 1.5e-13 81.6 188 31.4
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 1.9e-13 81.3 195 28.7
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 2.5e-13 80.9 197 28.9
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 2.5e-13 80.9 197 28.9
Thhalv10027442m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 2.5e-13 80.9 195 34.4
THA.LOC104808674 Tarenaya hassleriana HOM05D007897 ORTHO05D010061 4.2e-13 80.1 181 34.3
AL7G42190 Arabidopsis lyrata HOM05D007897 ORTHO05D010061 9.5e-13 79.0 194 33.0
Carub.0007s2820 Capsella rubella HOM05D007897 ORTHO05D010061 1.6e-12 78.2 186 31.2
TAR633G2792 Trochodendron aralioides HOM05D007897 ORTHO05D010061 1.6e-12 78.2 190 30.0
Gohir.D09G201400 Gossypium hirsutum HOM05D007897 ORTHO05D010061 2.1e-12 77.8 249 26.1
Gorai.006G225200 Gossypium raimondii HOM05D007897 ORTHO05D010061 2.1e-12 77.8 249 26.1
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 6.1e-12 76.3 185 30.3
Sp6g16180 Schrenkiella parvula HOM05D007897 ORTHO05D010061 6.1e-12 76.3 186 32.8
QL06p027281 Quercus lobata HOM05D007897 ORTHO05D010061 1.0e-11 75.5 190 28.9
BcaB08g35766 Brassica carinata HOM05D007897 ORTHO05D010061 1.4e-11 75.1 193 34.7
CARHR220230 Cardamine hirsuta HOM05D007897 ORTHO05D010061 1.8e-11 74.7 188 33.0
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 2.3e-11 74.3 164 32.3
Dinv32167 Davidia involucrata HOM05D007897 ORTHO05D010061 5.2e-11 73.2 195 27.7
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 8.8e-11 72.4 162 30.9
Atru.chr3.1764 Acer truncatum HOM05D007897 ORTHO05D010061 2.0e-10 71.2 185 30.8
Cpa.g.sc157.16 Carica papaya HOM05D007897 ORTHO05D010061 2.0e-10 71.2 193 30.6
Ciclev10004784m.g Citrus clementina HOM05D007897 ORTHO05D010061 2.6e-10 70.9 186 29.0
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 2.6e-10 70.9 204 28.4
CiPaw.02G062400 Carya illinoinensis HOM05D007897 ORTHO05D010061 3.4e-10 70.5 192 29.2
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 4.4e-10 70.1 184 32.1
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 4.4e-10 70.1 205 28.8
RcHm_v2.0_Chr4g0412521 Rosa chinensis HOM05D007897 ORTHO05D010061 4.4e-10 70.1 151 32.5
Sabra06G0059400 Salix brachista HOM05D007036 ORTHO05D008885 4.4e-10 70.1 127 35.4
ECA248G1461 Erigeron canadensis HOM05D007897 ORTHO05D010061 7.5e-10 69.3 207 28.5
HPP92_007232 Vanilla planifolia HOM05D007897 ORTHO05D010061 7.5e-10 69.3 189 29.1
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 9.8e-10 68.9 184 31.5
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 9.8e-10 68.9 168 29.8
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 9.8e-10 68.9 175 30.3
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 1.7e-09 68.2 153 32.0
FAN22G1341 Fragaria x ananassa HOM05D007897 ORTHO05D010061 6.3e-09 66.2 151 31.1
TAR633G2399 Trochodendron aralioides HOM05D007897 ORTHO05D010061 6.3e-09 66.2 180 30.0
Lalb_Chr06g0172791 Lupinus albus HOM05D006258 ORTHO05D007961 8.3e-09 65.9 272 20.2
HanXRQChr17g0535531 Helianthus annuus HOM05D007897 ORTHO05D010061 1.4e-08 65.1 203 27.6
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.4e-08 64.3 151 30.5
HanXRQChr01g0022031 Helianthus annuus HOM05D007897 ORTHO05D010061 2.4e-08 64.3 197 27.9
A10p11440 Brassica napus HOM05D007897 ORTHO05D010061 5.4e-08 63.2 193 32.6
FvH4_4g12861 Fragaria vesca HOM05D007897 ORTHO05D010061 5.4e-08 63.2 151 30.5
BraA10t43238Z Brassica rapa HOM05D007897 ORTHO05D010061 9.2e-08 62.4 193 32.6
HanXRQChr11g0346101 Helianthus annuus HOM05D000001 ORTHO05D000003 1.2e-07 62.0 232 24.6
Glyma.11G253700 Glycine max HOM05D007897 ORTHO05D010061 2.7e-07 60.8 156 31.4
Lsat_1_v5_gn_1_70121 Lactuca sativa HOM05D007897 ORTHO05D010061 3.5e-07 60.5 192 24.5
Aa31LG9G3200 Aethionema arabicum HOM05D007897 ORTHO05D010061 4.5e-07 60.1 179 33.5
Hma1.2p1_0892F.1_g233320 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 2.9e-06 57.4 133 27.1
Nitab4.5_0000141g0250 Nicotiana tabacum HOM05D000001 ORTHO05D010176 2.9e-06 57.4 149 28.2
SGA_v2.0_scaffold173G39172 Striga asiatica HOM05D000001 ORTHO05D000003 2.9e-06 57.4 216 24.5
Sabra14G0071100 Salix brachista HOM05D000001 ORTHO05D000003 8.6e-06 55.8 256 23.8


User provided reference genes

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