Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2447 Punica granatum HOM05D006855 ORTHO05D008695 2.2e-249 865.1 430 100.0
Eucgr.H02451 Eucalyptus grandis HOM05D006855 ORTHO05D008695 6.1e-151 538.1 450 62.2
GSVIVG01000584001 Vitis vinifera HOM05D006855 ORTHO05D008695 1.3e-148 530.4 448 62.7
TAR629G1507 Trochodendron aralioides HOM05D006855 ORTHO05D008695 3.5e-146 522.3 448 60.5
Atru.chr11.2187 Acer truncatum HOM05D006855 ORTHO05D008695 2.8e-143 512.7 449 58.4
MD13G1105700 Malus domestica HOM05D006855 ORTHO05D008695 9.8e-141 504.2 418 62.0
Dinv14753 Davidia involucrata HOM05D006855 ORTHO05D008695 1.3e-140 503.8 449 60.1
TWI75G0344 Tripterygium wilfordii HOM05D006855 ORTHO05D008695 2.2e-140 503.1 448 60.5
Potri.010G051200 Populus trichocarpa HOM05D006855 ORTHO05D008695 3.7e-140 502.3 418 62.2
CSS0002421 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 1.1e-139 500.7 445 59.3
Nn3g16630 Nelumbo nucifera HOM05D006855 ORTHO05D008695 1.1e-139 500.7 456 59.2
CiPaw.05G176800 Carya illinoinensis HOM05D006855 ORTHO05D008695 9.2e-139 497.7 415 61.7
RcHm_v2.0_Chr4g0432431 Rosa chinensis HOM05D006855 ORTHO05D008695 2.0e-138 496.5 413 62.5
CANSAT01G1415 Cannabis sativa HOM05D006855 ORTHO05D008695 1.0e-137 494.2 450 57.8
Thecc.02G266900 Theobroma cacao HOM05D006855 ORTHO05D008695 8.6e-137 491.1 446 57.8
Actinidia15119 Actinidia chinensis HOM05D006855 ORTHO05D008695 1.9e-136 490.0 447 58.4
COL.COLO4_23530 Corchorus olitorius HOM05D006855 ORTHO05D008695 2.5e-136 489.6 410 61.5
FAN12G0810 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.5e-136 489.6 433 60.0
Manes.12G019600 Manihot esculenta HOM05D006855 ORTHO05D008695 3.3e-136 489.2 403 62.0
Aqoxy3G01366 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 1.6e-135 486.9 449 58.1
Aqoxy3G00656 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 6.2e-135 485.0 449 57.9
CAN.G379.20 Capsicum annuum HOM05D006855 ORTHO05D008695 1.1e-134 484.2 447 57.0
Solyc01g008900.4 Solanum lycopersicum HOM05D006855 ORTHO05D008695 1.8e-134 483.4 438 58.2
ClCG05G026110 Citrullus lanatus HOM05D006855 ORTHO05D008695 6.8e-134 481.5 445 56.6
Nitab4.5_0015117g0010 Nicotiana tabacum HOM05D006855 ORTHO05D008695 1.2e-133 480.7 447 58.2
FAN17G2133 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.0e-133 479.9 433 59.4
Duzib248G0606 Durio zibethinus HOM05D006855 ORTHO05D008695 3.4e-133 479.2 446 56.7
Prupe.1G240700 Prunus persica HOM05D006855 ORTHO05D008695 4.4e-133 478.8 351 66.1
Sopen01g004390 Solanum pennellii HOM05D006855 ORTHO05D008695 4.4e-133 478.8 438 57.5
Ciclev10031545m.g Citrus clementina HOM05D006855 ORTHO05D008695 7.5e-133 478.0 436 58.0
Gohir.D12G150600 Gossypium hirsutum HOM05D006855 ORTHO05D008695 7.5e-133 478.0 444 57.0
Gorai.008G162100 Gossypium raimondii HOM05D006855 ORTHO05D008695 7.5e-133 478.0 444 57.2
FAN22G2334 Fragaria x ananassa HOM05D006855 ORTHO05D008695 3.7e-132 475.7 433 59.1
MELO3C011916.2 Cucumis melo HOM05D006855 ORTHO05D008695 4.9e-132 475.3 394 60.4
FAN07G2733 Fragaria x ananassa HOM05D006855 ORTHO05D008695 6.4e-132 474.9 423 59.8
Peaxi162Scf00050g00819 Petunia axillaris HOM05D006855 ORTHO05D008695 8.3e-132 474.6 438 57.8
PGSC0003DMG400022710 Solanum tuberosum HOM05D006855 ORTHO05D008695 3.2e-131 472.6 438 57.5
HanXRQChr12g0371791 Helianthus annuus HOM05D006855 ORTHO05D008695 1.2e-130 470.7 400 59.8
Medtr3g086360 Medicago truncatula HOM05D006855 ORTHO05D008695 2.1e-130 469.9 409 58.7
Lsat_1_v5_gn_8_153661 Lactuca sativa HOM05D006855 ORTHO05D008695 1.0e-129 467.6 396 59.1
Lj6g0028045 Lotus japonicus HOM05D006855 ORTHO05D008695 1.3e-129 467.2 415 58.3
CsaV3_5G030740 Cucumis sativus L. HOM05D006855 ORTHO05D008695 2.3e-129 466.5 395 59.7
Gohir.A12G146000 Gossypium hirsutum HOM05D006855 ORTHO05D008695 8.6e-129 464.5 438 57.3
AUR62024216 Chenopodium quinoa HOM05D006855 ORTHO05D008695 1.9e-128 463.4 444 55.2
Psat5g092640 Pisum sativum HOM05D006855 ORTHO05D008695 5.6e-128 461.8 420 56.9
MSTRG.548 Avicennia marina HOM05D006855 ORTHO05D008695 7.3e-128 461.5 435 56.1
Haze_12292 Corylus avellana HOM05D006855 ORTHO05D008695 7.3e-128 461.5 497 51.7
Lj3A1062T101 Lonicera japonica HOM05D006855 ORTHO05D008695 1.2e-127 460.7 410 59.5
PSO210G7557 Papaver somniferum HOM05D006855 ORTHO05D008695 1.2e-127 460.7 470 55.3
arahy.Tifrunner.gnm1.ann1.FYV5AX Arachis hypogaea HOM05D006855 ORTHO05D008695 3.6e-127 459.1 447 53.5
Cc11_g16140 Coffea canephora HOM05D006855 ORTHO05D008695 6.2e-127 458.4 441 56.9
TPR.G5676 Trifolium pratense HOM05D006855 ORTHO05D008695 3.1e-126 456.1 419 56.3
PSO478G2928 Papaver somniferum HOM05D006855 ORTHO05D008695 5.2e-126 455.3 466 54.9
Lalb_Chr11g0075551 Lupinus albus HOM05D006855 ORTHO05D008695 6.8e-126 454.9 420 56.4
THA.LOC104825678 Tarenaya hassleriana HOM05D006855 ORTHO05D008695 8.9e-126 454.5 429 55.7
Sed0018660 Sechium edule HOM05D006855 ORTHO05D008695 2.6e-125 453.0 412 56.3
Carub.0005s0400 Capsella rubella HOM05D006855 ORTHO05D008695 3.4e-125 452.6 420 57.1
Ah.02g130370 Amaranthus hybridus HOM05D006855 ORTHO05D008695 4.4e-125 452.2 413 55.7
ATR0796G133 Amborella trichopoda HOM05D006855 ORTHO05D008695 5.8e-125 451.8 413 56.7
Thhalv10004274m.g Eutrema salsugineum HOM05D006855 ORTHO05D008695 1.7e-124 450.3 414 58.7
CDE02G0600 Ceratophyllum demersum HOM05D006855 ORTHO05D008695 2.9e-124 449.5 394 58.4
Glyma.11G244400 Glycine max HOM05D006855 ORTHO05D008695 6.4e-124 448.4 419 57.0
CARHR147120 Cardamine hirsuta HOM05D006855 ORTHO05D008695 8.3e-124 448.0 406 58.1
Migut.K00633 Erythranthe guttata HOM05D006855 ORTHO05D008695 3.2e-123 446.0 449 56.3
AL5G14830 Arabidopsis lyrata HOM05D006855 ORTHO05D008695 1.6e-122 443.7 403 58.6
C07p35130 Brassica napus HOM05D006855 ORTHO05D008695 1.6e-122 443.7 390 61.8
BcaC06g33927 Brassica carinata HOM05D006855 ORTHO05D008695 1.0e-121 441.0 390 60.8
BolC7t44041H Brassica oleracea HOM05D006855 ORTHO05D008695 1.7e-121 440.3 390 61.0
AUR62005523 Chenopodium quinoa HOM05D006855 ORTHO05D008695 1.1e-120 437.6 363 60.3
EL10As2g23185 Beta vulgaris HOM05D006855 ORTHO05D008695 3.3e-120 436.0 444 53.2
Sp2g15320 Schrenkiella parvula HOM05D006855 ORTHO05D008695 3.3e-120 436.0 414 57.5
Phvul.001G256400 Phaseolus vulgaris HOM05D006855 ORTHO05D008695 4.3e-120 435.6 423 56.5
BraA06t27139Z Brassica rapa HOM05D006855 ORTHO05D008695 5.6e-120 435.3 390 59.7
A06p42230 Brassica napus HOM05D006855 ORTHO05D008695 2.1e-119 433.3 390 59.5
Aa31LG2G6230 Aethionema arabicum HOM05D006855 ORTHO05D008695 2.4e-118 429.9 408 56.1
ECA233G5842 Erigeron canadensis HOM05D000068 ORTHO05D000084 1.3e-116 424.1 371 58.8
BcaC06g31090 Brassica carinata HOM05D006855 ORTHO05D008695 1.7e-116 423.7 391 59.3
SalBow2G0666 Salvia bowleyana HOM05D006855 ORTHO05D008695 4.9e-116 422.2 436 53.4
SGA_v2.0_scaffold100G29585 Striga asiatica HOM05D006855 ORTHO05D008695 7.1e-115 418.3 395 56.2
VMungo1383G3215 Vigna mungo HOM05D000933 ORTHO05D000820 7.1e-115 418.3 398 56.5
Nitab4.5_0000718g0180 Nicotiana tabacum HOM05D006855 ORTHO05D008695 4.0e-110 402.5 444 51.6
HPP92_023148 Vanilla planifolia HOM05D006855 ORTHO05D008695 4.4e-109 399.1 404 52.2
vmacro16160 Vaccinium macrocarpon HOM05D006855 ORTHO05D008695 9.3e-107 391.3 402 53.2
MBI19_g16323_MAGBIO Magnolia biondii HOM05D006855 ORTHO05D008695 3.9e-105 386.0 369 55.8
unitig_699.g19941 Utricularia gibba HOM05D002671 ORTHO05D001380 1.4e-102 377.5 402 51.0
Zm00001eb155910 Zea mays HOM05D006855 ORTHO05D008695 8.7e-97 358.2 386 52.1
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 8.1e-95 351.7 398 48.2
AT3G26115 Arabidopsis thaliana HOM05D006855 ORTHO05D008695 2.6e-93 346.7 326 57.7
Ca_25129_v3 Cicer arietinum L. HOM05D006855 ORTHO05D008695 6.5e-92 342.0 278 62.2
CSS0027349 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 5.5e-91 339.0 385 48.3
QL03p056156 Quercus lobata HOM05D006855 ORTHO05D008695 2.1e-90 337.0 284 62.3
Pp3c22_21870 Physcomitrium patens HOM05D006855 ORTHO05D008695 4.6e-90 335.9 342 51.2
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 5.3e-78 295.8 334 48.8
Sc11g0000830 Simmondsia chinensis HOM05D006855 ORTHO05D008695 3.4e-77 293.1 295 55.3
Hund25410 Selenicereus undatus HOM05D006855 ORTHO05D008695 1.7e-76 290.8 323 51.7
SEGI_15055 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 7.7e-69 265.4 280 51.4
FvH4_4g25240 Fragaria vesca HOM05D006855 ORTHO05D008695 2.4e-62 243.8 257 54.1
SMO327G0033 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 3.1e-62 243.4 296 45.9
Os01g0695600 Oryza sativa ssp. japonica HOM05D006855 ORTHO05D008695 2.0e-61 240.7 374 40.4
SMO203G0059 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.2e-58 231.5 309 42.4
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 2.7e-58 230.3 488 33.0
Cpa.g.sc33.79 Carica papaya HOM05D006855 ORTHO05D008695 1.4e-57 228.0 178 62.4
Carub.0005s0511 Capsella rubella HOM05D006855 ORTHO05D008695 9.7e-56 221.9 240 50.8
FAN18G3688 Fragaria x ananassa HOM05D006855 ORTHO05D008695 3.2e-51 206.8 155 65.2
FAN14G3171 Fragaria x ananassa HOM05D006855 ORTHO05D008695 5.5e-51 206.1 144 67.4
FAN08G3042 Fragaria x ananassa HOM05D006855 ORTHO05D008695 3.6e-50 203.4 147 66.7
SEGI_08498 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 1.0e-49 201.8 173 54.9
QL03p056162 Quercus lobata HOM05D006855 ORTHO05D008695 9.8e-48 195.3 149 63.1
arahy.Tifrunner.gnm1.ann1.74BAAJ Arachis hypogaea HOM05D006855 ORTHO05D008695 1.7e-47 194.5 196 51.0
SMO327G0043 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 2.7e-45 187.2 266 41.4
SMO203G0223 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 2.2e-44 184.1 244 43.4
FAN15G2953 Fragaria x ananassa HOM05D006855 ORTHO05D008695 4.0e-33 146.7 115 60.9
FAN23G2199 Fragaria x ananassa HOM05D006855 ORTHO05D008695 4.4e-32 143.3 112 60.7
CSS0015338 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 5.8e-24 116.3 102 56.9
Sabra10G0018700 Salix brachista HOM05D000933 ORTHO05D000820 2.4e-22 110.9 112 52.7
CSS0040008 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 7.8e-21 105.9 117 47.0
ECA233G3820 Erigeron canadensis HOM05D006855 ORTHO05D008695 9.5e-19 99.0 97 51.5
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 4.7e-18 96.7 322 27.0
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 1.8e-17 94.7 345 26.4
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 2.3e-17 94.4 417 27.8
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 5.2e-17 93.2 329 25.5
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 3.4e-16 90.5 326 26.4
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 7.5e-16 89.4 320 26.9
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 2.2e-15 87.8 335 26.6
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 2.9e-15 87.4 321 25.9
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 6.4e-15 86.3 338 25.4
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 6.4e-15 86.3 320 27.5
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 6.4e-15 86.3 329 24.9
Mapoly0080s0004 Marchantia polymorpha HOM05D005071 ORTHO05D006069 6.4e-15 86.3 325 27.4
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 6.4e-15 86.3 320 29.1
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 6.4e-15 86.3 330 25.8
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 1.1e-14 85.5 321 26.8
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 1.1e-14 85.5 326 27.3
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 4.1e-14 83.6 322 27.3
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 2.1e-13 81.3 326 26.1
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 4.6e-13 80.1 321 26.2
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 3.9e-12 77.0 339 26.3
CDE05G0597 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 5.1e-12 76.6 312 26.6
VMungo1383G3417 Vigna mungo HOM05D006350 ORTHO05D007850 1.9e-11 74.7 67 55.2
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 5.6e-11 73.2 338 24.6
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 7.3e-11 72.8 353 23.5
SalBow5G0201 Salvia bowleyana HOM05D005071 ORTHO05D006069 1.6e-10 71.6 323 25.7
SalBow5G4817 Salvia bowleyana HOM05D005071 ORTHO05D006069 1.6e-10 71.6 321 24.3
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 2.1e-10 71.2 317 24.3


User provided reference genes

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