Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2398 Punica granatum HOM05D006879 ORTHO05D008452 1.3e-60 236.1 115 100.0
Eucgr.F03793 Eucalyptus grandis HOM05D006879 ORTHO05D008452 1.6e-42 176.0 113 73.5
QL09p034330 Quercus lobata HOM05D006879 ORTHO05D008452 4.8e-42 174.5 114 68.4
QL09p034374 Quercus lobata HOM05D006879 ORTHO05D008452 4.8e-42 174.5 114 68.4
Dinv07211 Davidia involucrata HOM05D006879 ORTHO05D008452 1.1e-41 173.3 102 77.5
Sc02g0005010 Simmondsia chinensis HOM05D006879 ORTHO05D008452 4.0e-41 171.4 111 71.2
Nn5g28321 Nelumbo nucifera HOM05D006879 ORTHO05D008452 6.9e-41 170.6 103 74.8
Thecc.08G126700 Theobroma cacao HOM05D006879 ORTHO05D008452 9.0e-41 170.2 111 69.4
Cfa016025 Carpinus fangiana HOM05D006879 ORTHO05D008452 1.5e-40 169.5 102 73.5
Dinv27305 Davidia involucrata HOM05D006879 ORTHO05D008452 1.5e-40 169.5 110 72.7
CSS0011792 Camellia sinensis var. sinensis HOM05D006879 ORTHO05D008452 2.0e-40 169.1 105 72.4
Hund17297 Selenicereus undatus HOM05D006879 ORTHO05D008452 2.0e-40 169.1 105 76.2
Haze_00431 Corylus avellana HOM05D000586 ORTHO05D008452 2.6e-40 168.7 101 75.2
Manes.02G164300 Manihot esculenta HOM05D006879 ORTHO05D008452 4.5e-40 167.9 111 70.3
Ciclev10002899m.g Citrus clementina HOM05D006879 ORTHO05D008452 7.6e-40 167.2 101 71.3
CiPaw.06G031600 Carya illinoinensis HOM05D006879 ORTHO05D008452 1.3e-39 166.4 112 66.1
Gohir.D01G180300 Gossypium hirsutum HOM05D006879 ORTHO05D008452 1.3e-39 166.4 111 69.4
CARHR071070 Cardamine hirsuta HOM05D006879 ORTHO05D008452 2.2e-39 165.6 115 67.8
Potri.005G178501 Populus trichocarpa HOM05D006879 ORTHO05D008452 2.2e-39 165.6 112 71.4
Gorai.002G222300 Gossypium raimondii HOM05D006879 ORTHO05D008452 2.9e-39 165.2 111 68.5
AUR62014329 Chenopodium quinoa HOM05D006879 ORTHO05D008452 4.9e-39 164.5 116 69.0
Gohir.A01G189200 Gossypium hirsutum HOM05D006879 ORTHO05D008452 4.9e-39 164.5 110 68.2
MD15G1347100 Malus domestica HOM05D006879 ORTHO05D008452 8.4e-39 163.7 118 68.6
Atru.chr13.1490 Acer truncatum HOM05D006879 ORTHO05D008452 1.1e-38 163.3 108 68.5
Aqoxy6G00233 Aquilegia oxysepala HOM05D006879 ORTHO05D008452 1.1e-38 163.3 112 69.6
CsaV3_4G028290 Cucumis sativus L. HOM05D006879 ORTHO05D008452 1.4e-38 162.9 104 67.3
Duzib041G0788 Durio zibethinus HOM05D006879 ORTHO05D008452 1.4e-38 162.9 101 73.3
Actinidia03466 Actinidia chinensis HOM05D006879 ORTHO05D008452 1.9e-38 162.5 111 70.3
AUR62019072 Chenopodium quinoa HOM05D006879 ORTHO05D008452 1.9e-38 162.5 112 68.8
FAN20G0093 Fragaria x ananassa HOM05D006879 ORTHO05D008452 1.9e-38 162.5 112 67.0
Hma1.2p1_0054F.1_g031040 Hydrangea macrophylla HOM05D006879 ORTHO05D008452 1.9e-38 162.5 105 72.4
BcaB02g07111 Brassica carinata HOM05D006879 ORTHO05D008452 2.4e-38 162.2 112 65.2
COL.COLO4_03398 Corchorus olitorius HOM05D006879 ORTHO05D008452 2.4e-38 162.2 101 73.3
MELO3C010476.2 Cucumis melo HOM05D006879 ORTHO05D008452 2.4e-38 162.2 114 63.2
Sopen08g021740 Solanum pennellii HOM05D006879 ORTHO05D008452 2.4e-38 162.2 103 71.8
BcaC08g45472 Brassica carinata HOM05D006879 ORTHO05D008452 3.2e-38 161.8 112 66.1
A07p27940 Brassica napus HOM05D006879 ORTHO05D008452 3.2e-38 161.8 112 67.0
C06p31190 Brassica napus HOM05D006879 ORTHO05D008452 3.2e-38 161.8 112 66.1
BolC6t38260H Brassica oleracea HOM05D006879 ORTHO05D008452 3.2e-38 161.8 112 66.1
Prupe.1G494800 Prunus persica HOM05D006879 ORTHO05D008452 4.2e-38 161.4 105 71.4
Solyc08g067800.3 Solanum lycopersicum HOM05D006879 ORTHO05D008452 4.2e-38 161.4 103 70.9
TWI32G0821 Tripterygium wilfordii HOM05D006879 ORTHO05D008452 5.5e-38 161.0 91 78.0
Aa31LG4G7630 Aethionema arabicum HOM05D006879 ORTHO05D008452 7.1e-38 160.6 115 64.3
RcHm_v2.0_Chr6g0295961 Rosa chinensis HOM05D006879 ORTHO05D008452 7.1e-38 160.6 99 71.7
BraA07t30441Z Brassica rapa HOM05D006879 ORTHO05D008452 9.3e-38 160.2 112 66.1
ClCG11G015720 Citrullus lanatus HOM05D006879 ORTHO05D008452 1.6e-37 159.5 117 61.5
HanXRQChr03g0088981 Helianthus annuus HOM05D006879 ORTHO05D008452 1.6e-37 159.5 110 66.4
FvH4_2g27080 Fragaria vesca HOM05D006879 ORTHO05D008452 2.1e-37 159.1 112 64.3
VMungo0647G0471 Vigna mungo HOM05D006879 ORTHO05D008452 2.7e-37 158.7 112 66.1
PSO528G0112 Papaver somniferum HOM05D006879 ORTHO05D008452 4.6e-37 157.9 114 65.8
Phvul.008G160300 Phaseolus vulgaris HOM05D006879 ORTHO05D008452 6.0e-37 157.5 115 63.5
CAN.G21.5 Capsicum annuum HOM05D006879 ORTHO05D008452 7.9e-37 157.1 102 71.6
FAN24G0949 Fragaria x ananassa HOM05D006879 ORTHO05D008452 7.9e-37 157.1 112 63.4
Medtr3g088570 Medicago truncatula HOM05D006879 ORTHO05D008452 7.9e-37 157.1 100 70.0
TAR628G0734 Trochodendron aralioides HOM05D006879 ORTHO05D008452 7.9e-37 157.1 98 72.4
Sed0023358 Sechium edule HOM05D006879 ORTHO05D008452 1.0e-36 156.8 112 62.5
THA.LOC104813659 Tarenaya hassleriana HOM05D006879 ORTHO05D008452 1.0e-36 156.8 111 67.6
CANSAT56G2034 Cannabis sativa HOM05D006879 ORTHO05D008452 1.8e-36 156.0 113 65.5
Glyma.14G151700 Glycine max HOM05D006879 ORTHO05D008452 3.0e-36 155.2 100 71.0
AL2G37750 Arabidopsis lyrata HOM05D006879 ORTHO05D008452 3.9e-36 154.8 115 62.6
EL10Ac1g01022 Beta vulgaris HOM05D006879 ORTHO05D008452 3.9e-36 154.8 103 69.9
Cc10_g12010 Coffea canephora HOM05D006879 ORTHO05D008452 3.9e-36 154.8 101 69.3
ECA240G3722 Erigeron canadensis HOM05D006879 ORTHO05D008452 5.1e-36 154.5 110 65.5
Thhalv10019334m.g Eutrema salsugineum HOM05D006879 ORTHO05D008452 6.7e-36 154.1 112 65.2
Lsat_1_v5_gn_6_93360 Lactuca sativa HOM05D006879 ORTHO05D008452 6.7e-36 154.1 110 66.4
Lj1g0005641 Lotus japonicus HOM05D006879 ORTHO05D008452 6.7e-36 154.1 99 69.7
Sp5g32720 Schrenkiella parvula HOM05D006879 ORTHO05D008452 6.7e-36 154.1 115 60.9
arahy.Tifrunner.gnm1.ann1.0SZ2NS Arachis hypogaea HOM05D006879 ORTHO05D008452 8.7e-36 153.7 96 71.9
arahy.Tifrunner.gnm1.ann1.61DA9N Arachis hypogaea HOM05D006879 ORTHO05D008452 8.7e-36 153.7 96 71.9
arahy.Tifrunner.gnm1.ann1.GV74HV Arachis hypogaea HOM05D006879 ORTHO05D008452 8.7e-36 153.7 96 71.9
AT1G77540 Arabidopsis thaliana HOM05D006879 ORTHO05D008452 1.9e-35 152.5 115 60.9
PSO170G0506 Papaver somniferum HOM05D006879 ORTHO05D008452 2.5e-35 152.1 114 64.9
MSTRG.25382 Avicennia marina HOM05D006879 ORTHO05D008452 3.3e-35 151.8 109 67.0
Carub.0001s2123 Capsella rubella HOM05D006879 ORTHO05D008452 3.3e-35 151.8 108 65.7
Carub.0002s2444 Capsella rubella HOM05D006879 ORTHO05D008452 5.6e-35 151.0 101 67.3
Nitab4.5_0004334g0040 Nicotiana tabacum HOM05D006879 ORTHO05D008452 5.6e-35 151.0 113 64.6
Nitab4.5_0005583g0080 Nicotiana tabacum HOM05D006879 ORTHO05D008452 1.6e-34 149.4 111 65.8
CDE07G0981 Ceratophyllum demersum HOM05D006879 ORTHO05D008452 2.1e-34 149.1 102 64.7
Migut.C01128 Erythranthe guttata HOM05D006879 ORTHO05D008452 3.7e-34 148.3 101 65.3
Ca_28182_v3 Cicer arietinum L. HOM05D006879 ORTHO05D008452 8.1e-34 147.1 90 71.1
Aa31LG7G5750 Aethionema arabicum HOM05D006879 ORTHO05D008452 1.1e-33 146.7 107 64.5
Lalb_Chr11g0066061 Lupinus albus HOM05D006879 ORTHO05D008452 2.4e-33 145.6 90 68.9
SGA_v2.0_scaffold52G18964 Striga asiatica HOM05D006879 ORTHO05D008452 3.1e-33 145.2 109 65.1
Psat5g086200 Pisum sativum HOM05D006879 ORTHO05D008452 5.3e-33 144.4 102 63.7
AT1G21770 Arabidopsis thaliana HOM05D006879 ORTHO05D008452 6.9e-33 144.1 109 60.6
Sp1g19330 Schrenkiella parvula HOM05D006879 ORTHO05D008452 6.9e-33 144.1 99 64.6
AL1G34970 Arabidopsis lyrata HOM05D006879 ORTHO05D008452 9.0e-33 143.7 107 61.7
BcaC05g26099 Brassica carinata HOM05D006879 ORTHO05D008452 2.0e-32 142.5 95 65.3
ATR0584G146 Amborella trichopoda HOM05D006879 ORTHO05D008452 3.4e-32 141.7 96 65.6
BolC5t30777H Brassica oleracea HOM05D006879 ORTHO05D008452 1.0e-31 140.2 95 64.2
Thhalv10009164m.g Eutrema salsugineum HOM05D006879 ORTHO05D008452 1.3e-31 139.8 106 61.3
FAN15G3590 Fragaria x ananassa HOM05D006879 ORTHO05D008452 1.7e-31 139.4 147 49.0
BcaB07g32176 Brassica carinata HOM05D006879 ORTHO05D008452 4.9e-31 137.9 95 63.2
A06p17880 Brassica napus HOM05D006879 ORTHO05D008452 1.9e-30 136.0 95 63.2
BraA06t24878Z Brassica rapa HOM05D006879 ORTHO05D008452 1.9e-30 136.0 95 63.2
C05p20780 Brassica napus HOM05D006879 ORTHO05D008452 7.1e-30 134.0 95 63.2
RhsimUnG0092300 Rhododendron simsii HOM05D000586 ORTHO05D008452 1.3e-28 129.8 81 72.8
vmacro00838 Vaccinium macrocarpon HOM05D006879 ORTHO05D008452 1.8e-28 129.4 78 74.4
TPR.G20905 Trifolium pratense HOM05D006879 ORTHO05D008452 3.3e-27 125.2 75 74.7
Cpa.g.sc418.6 Carica papaya HOM05D006879 ORTHO05D008452 9.6e-27 123.6 79 70.9
CAN.G21.4 Capsicum annuum HOM05D006879 ORTHO05D008452 1.3e-26 123.2 102 52.9
GSVIVG01008857001 Vitis vinifera HOM05D006879 ORTHO05D008452 1.4e-25 119.8 68 82.4
Ah.05g171050 Amaranthus hybridus HOM05D006879 ORTHO05D008452 3.1e-25 118.6 79 72.2
Oeu059437.1 Olea europaea HOM05D006879 ORTHO05D008452 1.2e-24 116.7 68 76.5
Pp3c12_9490 Physcomitrium patens HOM05D006879 ORTHO05D008452 1.3e-23 113.2 110 49.1
Zm00001eb082730 Zea mays HOM05D006879 ORTHO05D008452 2.2e-23 112.5 96 55.2
SMO146G0286 Selaginella moellendorffii HOM05D006879 ORTHO05D008452 2.7e-21 105.5 92 50.0
SEGI_19819 Sequoiadendron giganteum HOM05D006879 ORTHO05D008452 6.7e-20 100.9 85 60.0
HanXRQChr01g0005251 Helianthus annuus HOM05D006879 ORTHO05D008452 1.1e-19 100.1 75 66.7
HanXRQChr04g0101301 Helianthus annuus HOM05D006879 ORTHO05D008452 1.1e-19 100.1 67 71.6
Peaxi162Scf00332g00015 Petunia axillaris HOM05D006879 ORTHO05D008452 1.1e-19 100.1 65 72.3
Mapoly0075s0062 Marchantia polymorpha HOM05D006879 ORTHO05D008452 4.3e-19 98.2 117 44.4
AagrBONN_evm.TU.Sc2ySwM_117.2168 Anthoceros agrestis HOM05D006879 ORTHO05D008452 1.8e-17 92.8 91 47.3
Os04g0431300 Oryza sativa ssp. japonica HOM05D006879 ORTHO05D008452 9.0e-17 90.5 62 62.9
Eucgr.H03925 Eucalyptus grandis HOM05D006879 ORTHO05D008452 3.4e-16 88.6 62 67.7
Eucgr.H03927 Eucalyptus grandis HOM05D006879 ORTHO05D008452 8.5e-15 84.0 102 50.0
CBR_g36233 Chara braunii HOM05D006879 ORTHO05D008452 4.6e-13 78.2 59 55.9
HanXRQChr09g0244451 Helianthus annuus HOM05D006879 ORTHO05D008452 6.3e-10 67.8 61 55.7
MCO09G076 Micromonas commoda HOM05D006879 ORTHO05D008452 3.2e-06 55.5 69 42.0


User provided reference genes

Program Settings