Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 2.5e-182 642.1 354 100.0
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 2.6e-99 366.3 357 61.6
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 6.1e-96 355.1 360 59.2
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 1.0e-95 354.4 356 61.5
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 2.8e-93 346.3 352 59.9
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 2.4e-92 343.2 352 59.9
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 3.1e-92 342.8 362 60.2
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 2.9e-90 336.3 358 58.1
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 8.5e-90 334.7 329 62.0
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.4e-89 334.0 358 58.1
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 7.2e-89 331.6 362 60.5
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 7.2e-89 331.6 357 59.7
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 6.1e-88 328.6 361 59.6
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 5.1e-87 325.5 357 60.2
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 6.7e-87 325.1 357 57.1
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 1.5e-86 323.9 355 57.2
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.6e-86 323.2 349 57.3
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 5.7e-86 322.0 328 59.8
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 7.4e-86 321.6 330 57.0
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 8.2e-85 318.2 356 56.2
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.0e-82 311.2 361 54.8
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.7e-82 310.5 375 54.1
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 5.0e-82 308.9 365 54.8
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 5.0e-82 308.9 348 56.6
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 2.5e-81 306.6 361 55.1
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 7.2e-81 305.1 343 56.0
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 3.6e-80 302.8 354 56.2
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.8e-79 300.4 364 54.1
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 2.3e-79 300.1 346 56.4
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 3.0e-79 299.7 365 55.3
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.1e-78 297.7 363 53.7
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 1.5e-78 297.4 365 53.4
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 2.0e-78 297.0 359 55.7
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.4e-78 295.8 363 54.5
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 1.8e-76 290.4 355 54.1
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 2.4e-76 290.0 358 53.6
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 9.1e-76 288.1 353 54.7
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 9.1e-76 288.1 363 54.0
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.6e-75 287.3 362 53.3
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 2.6e-75 286.6 352 53.7
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 4.5e-75 285.8 360 53.1
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.5e-75 285.8 369 52.6
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 5.9e-75 285.4 358 53.9
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 5.9e-75 285.4 362 54.7
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 1.7e-74 283.9 360 52.5
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 6.5e-74 282.0 360 54.2
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 1.5e-73 280.8 330 54.2
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 1.9e-73 280.4 358 53.9
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 2.5e-73 280.0 350 52.3
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 4.2e-73 279.3 340 54.1
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 9.4e-73 278.1 362 52.5
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.7e-72 276.6 353 50.4
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.7e-72 276.6 358 50.6
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 4.7e-72 275.8 353 53.5
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 4.7e-72 275.8 362 52.5
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 4.7e-72 275.8 359 53.8
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 6.1e-72 275.4 379 49.3
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 8.0e-72 275.0 360 53.9
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 2.3e-71 273.5 364 51.6
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.2e-70 271.2 268 61.2
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 4.4e-70 269.2 363 51.8
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 5.7e-70 268.9 356 53.4
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 7.5e-70 268.5 302 56.3
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.3e-69 267.7 359 49.9
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.7e-69 267.3 367 49.3
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 2.2e-69 266.9 330 51.2
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 4.8e-69 265.8 367 48.8
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 2.4e-68 263.5 355 52.4
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 4.1e-68 262.7 357 50.7
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 5.3e-68 262.3 356 52.5
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 5.3e-68 262.3 351 51.6
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 2.0e-67 260.4 363 51.0
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 2.7e-67 260.0 371 50.1
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 7.7e-67 258.5 360 50.6
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 1.0e-66 258.1 320 49.1
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 1.0e-66 258.1 360 49.7
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 1.3e-66 257.7 368 50.5
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 1.7e-66 257.3 363 49.0
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 6.5e-66 255.4 350 51.1
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 6.5e-66 255.4 393 47.1
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 1.9e-65 253.8 366 47.8
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 2.5e-65 253.4 369 50.1
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 4.2e-65 252.7 357 50.1
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 5.5e-65 252.3 373 49.6
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 5.5e-65 252.3 362 48.6
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 7.2e-65 251.9 339 50.4
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 2.1e-64 250.4 357 48.2
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 6.1e-64 248.8 364 49.5
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 1.0e-63 248.1 331 49.5
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 1.4e-63 247.7 359 46.8
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 2.3e-63 246.9 408 45.8
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 3.0e-63 246.5 360 49.4
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 4.0e-63 246.1 360 48.1
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 7.5e-62 241.9 282 55.3
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 4.8e-61 239.2 369 48.5
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 6.3e-61 238.8 323 49.8
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 6.3e-61 238.8 354 47.2
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.8e-60 237.3 363 46.3
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 3.5e-59 233.0 361 46.5
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 4.5e-59 232.6 235 60.4
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 4.5e-59 232.6 398 45.7
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 7.7e-59 231.9 354 48.3
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 1.5e-57 227.6 351 50.4
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 1.8e-55 220.7 347 47.0
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 1.5e-54 217.6 368 46.5
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 4.4e-54 216.1 355 45.9
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 6.3e-53 212.2 358 44.7
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 1.6e-51 207.6 366 41.3
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 1.7e-50 204.1 346 43.6
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 3.3e-49 199.9 320 48.8
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 3.1e-47 193.4 296 46.3
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 3.1e-47 193.4 343 42.0
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 6.8e-47 192.2 338 42.3
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 2.0e-46 190.7 280 46.8
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 1.4e-44 184.5 358 42.2
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 1.4e-44 184.5 345 41.2
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 7.0e-44 182.2 395 38.5
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 1.2e-43 181.4 398 37.7
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 3.0e-42 176.8 281 45.9
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 1.1e-41 174.9 294 45.6
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 4.3e-41 172.9 339 43.7
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 2.1e-40 170.6 397 38.8
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 2.1e-40 170.6 397 38.8
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 1.8e-39 167.5 407 38.3
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 4.0e-39 166.4 419 36.8
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 4.0e-39 166.4 357 41.5
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 4.0e-39 166.4 397 38.5
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 6.8e-39 165.6 321 41.1
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 3.4e-38 163.3 362 41.2
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 4.4e-38 162.9 407 37.8
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 7.5e-38 162.2 252 48.4
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 4.7e-24 116.3 175 48.6
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 7.6e-22 109.0 430 29.5
MD01G1041800 Malus domestica HOM05D005535 ORTHO05D006753 4.8e-08 63.2 50 70.0
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 4.8e-08 63.2 110 34.5
TAR375G0593 Trochodendron aralioides HOM05D005535 ORTHO05D006753 2.4e-07 60.8 65 58.5
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 5.3e-07 59.7 202 32.7
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.2e-06 58.5 103 39.8
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 1.5e-06 58.2 95 43.2
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 1.5e-06 58.2 230 28.7
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 2.0e-06 57.8 92 40.2
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 3.4e-06 57.0 71 46.5
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 5.8e-06 56.2 96 40.6
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 7.6e-06 55.8 69 46.4
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 9.9e-06 55.5 115 37.4


User provided reference genes

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