Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2364 Punica granatum HOM05D005849 ORTHO05D004704 9.4e-119 430.3 225 100.0
QL04p068477 Quercus lobata HOM05D005849 ORTHO05D004704 2.7e-33 146.4 236 46.6
Sabra14G0127500 Salix brachista HOM05D005849 ORTHO05D004704 4.3e-31 139.0 226 46.5
Duzib133G0645 Durio zibethinus HOM05D005849 ORTHO05D004704 6.9e-29 131.7 237 42.2
Duzib138G1177 Durio zibethinus HOM05D005849 ORTHO05D004704 6.9e-29 131.7 258 38.8
Thecc.01G196200 Theobroma cacao HOM05D005849 ORTHO05D004704 1.5e-28 130.6 254 41.7
Potri.014G167700 Populus trichocarpa HOM05D005849 ORTHO05D004704 1.3e-27 127.5 237 43.0
TAR629G2787 Trochodendron aralioides HOM05D005849 ORTHO05D004704 1.3e-27 127.5 151 52.3
Dinv26604 Davidia involucrata HOM05D005849 ORTHO05D004704 2.2e-27 126.7 237 43.5
CiPaw.04G197000 Carya illinoinensis HOM05D005849 ORTHO05D004704 8.5e-27 124.8 241 42.7
RcHm_v2.0_Chr2g0155981 Rosa chinensis HOM05D005849 ORTHO05D004704 1.4e-26 124.0 215 43.3
Lj8P136T22 Lonicera japonica HOM05D005849 ORTHO05D004704 1.2e-25 120.9 237 42.6
COL.COLO4_19617 Corchorus olitorius HOM05D005849 ORTHO05D004704 2.7e-25 119.8 182 45.1
Haze_12628 Corylus avellana HOM05D005849 ORTHO05D004704 6.1e-25 118.6 219 46.1
FAN05G2424 Fragaria x ananassa HOM05D005849 ORTHO05D004704 1.0e-24 117.9 215 43.3
Cfa014225 Carpinus fangiana HOM05D005849 ORTHO05D004704 1.4e-24 117.5 215 46.0
FAN02G2959 Fragaria x ananassa HOM05D005849 ORTHO05D004704 1.4e-24 117.5 215 42.8
FvH4_6g40610 Fragaria vesca HOM05D005849 ORTHO05D004704 2.3e-24 116.7 215 42.3
FAN09G2506 Fragaria x ananassa HOM05D005849 ORTHO05D004704 2.3e-24 116.7 215 42.8
FAN14G3262 Fragaria x ananassa HOM05D005849 ORTHO05D004704 2.3e-24 116.7 215 42.3
Manes.13G061900 Manihot esculenta HOM05D005849 ORTHO05D004704 3.9e-24 115.9 248 45.2
TWI36G1699 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 1.1e-23 114.4 258 41.1
Aqoxy4G02338 Aquilegia oxysepala HOM05D005849 ORTHO05D004704 2.0e-23 113.6 257 37.7
CiPaw.03G281900 Carya illinoinensis HOM05D005849 ORTHO05D004704 3.3e-23 112.8 224 40.6
MD09G1126800 Malus domestica HOM05D005849 ORTHO05D004704 4.3e-23 112.5 210 40.5
TAR629G2911 Trochodendron aralioides HOM05D005849 ORTHO05D004704 4.3e-23 112.5 223 42.2
MD17G1117100 Malus domestica HOM05D005849 ORTHO05D004704 5.7e-23 112.1 180 43.9
Prupe.3G197400 Prunus persica HOM05D005849 ORTHO05D004704 5.7e-23 112.1 232 40.1
Gohir.A07G192100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 7.4e-23 111.7 231 40.7
Gorai.001G191400 Gossypium raimondii HOM05D005849 ORTHO05D004704 1.3e-22 110.9 222 41.9
Solyc07g045450.1 Solanum lycopersicum HOM05D005849 ORTHO05D004704 2.2e-22 110.2 124 51.6
Sopen07g023990 Solanum pennellii HOM05D005849 ORTHO05D004704 2.2e-22 110.2 124 51.6
Gorai.001G222200 Gossypium raimondii HOM05D005849 ORTHO05D004704 1.8e-21 107.1 231 39.4
Nitab4.5_0000006g0660 Nicotiana tabacum HOM05D005849 ORTHO05D004704 3.1e-21 106.3 237 36.7
Cpa.g.sc136.30 Carica papaya HOM05D005849 ORTHO05D004704 6.9e-21 105.1 229 38.4
Gohir.D07G198400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 6.9e-21 105.1 231 39.0
Gohir.A07G169800 Gossypium hirsutum HOM05D005849 ORTHO05D004704 9.1e-21 104.8 224 40.2
Gohir.D07G171100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 1.2e-20 104.4 223 41.3
Rhsim06G0176600 Rhododendron simsii HOM05D005849 ORTHO05D004704 2.0e-20 103.6 221 40.3
TWI18G0644 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 2.0e-20 103.6 246 39.0
Cc03_g07410 Coffea canephora HOM05D005849 ORTHO05D004704 1.3e-19 100.9 150 48.7
MBI19_g14891_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 1.7e-19 100.5 109 54.1
Ciclev10018021m.g Citrus clementina HOM05D005849 ORTHO05D004704 2.2e-19 100.1 128 49.2
CsaV3_6G009640 Cucumis sativus L. HOM05D005849 ORTHO05D004704 2.9e-19 99.8 222 40.1
Manes.12G064702 Manihot esculenta HOM05D005849 ORTHO05D004704 2.9e-19 99.8 237 38.4
Sed0012118 Sechium edule HOM05D005849 ORTHO05D004704 2.9e-19 99.8 242 37.6
Nn1g03187 Nelumbo nucifera HOM05D005849 ORTHO05D004704 3.8e-19 99.4 243 37.0
Actinidia18832 Actinidia chinensis HOM05D005849 ORTHO05D004704 5.0e-19 99.0 108 54.6
AUR62015005 Chenopodium quinoa HOM05D005849 ORTHO05D004704 1.9e-18 97.1 232 36.6
DCAR_012893 Daucus carota HOM05D005849 ORTHO05D004704 2.5e-18 96.7 152 41.4
MELO3C025957.2 Cucumis melo HOM05D005849 ORTHO05D004704 4.2e-18 95.9 127 48.8
ECA240G3450 Erigeron canadensis HOM05D005849 ORTHO05D004704 4.2e-18 95.9 125 52.0
Lsat_1_v5_gn_9_103781 Lactuca sativa HOM05D005849 ORTHO05D004704 7.2e-18 95.1 194 43.8
Medtr5g098480 Medicago truncatula HOM05D005849 ORTHO05D004704 7.2e-18 95.1 185 41.1
Oeu064351.1 Olea europaea HOM05D005849 ORTHO05D004704 7.2e-18 95.1 137 46.0
Phvul.007G121090 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 7.2e-18 95.1 239 36.0
EL10Ac9g22679 Beta vulgaris HOM05D005849 ORTHO05D004704 9.4e-18 94.7 125 47.2
Dinv21298 Davidia involucrata HOM05D005849 ORTHO05D004704 9.4e-18 94.7 226 36.7
Actinidia07866 Actinidia chinensis HOM05D005849 ORTHO05D004704 1.2e-17 94.4 171 41.5
PSO541G2883 Papaver somniferum HOM05D005849 ORTHO05D004704 4.7e-17 92.4 257 34.2
MBI16_g22138_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 6.1e-17 92.0 140 45.0
PSO675G3647 Papaver somniferum HOM05D005849 ORTHO05D004704 3.0e-16 89.7 256 34.0
AUR62029117 Chenopodium quinoa HOM05D005849 ORTHO05D004704 3.9e-16 89.4 188 37.2
Nn1g07503 Nelumbo nucifera HOM05D005849 ORTHO05D004704 3.9e-16 89.4 155 41.3
Sed0027972 Sechium edule HOM05D005849 ORTHO05D004704 5.1e-16 89.0 185 37.8
Actinidia35203 Actinidia chinensis HOM05D005849 ORTHO05D004704 2.0e-15 87.0 214 37.4
DCAR_019680 Daucus carota HOM05D005849 ORTHO05D004704 7.4e-15 85.1 223 35.4
MSTRG.12249 Avicennia marina HOM05D005849 ORTHO05D004704 1.3e-14 84.3 151 42.4
Eucgr.H00876 Eucalyptus grandis HOM05D005849 ORTHO05D004704 2.2e-14 83.6 227 41.4
LjContig00081g0015024 Lotus japonicus HOM05D005849 ORTHO05D004704 2.2e-14 83.6 213 36.2
Duzib213G0789 Durio zibethinus HOM05D005849 ORTHO05D004704 3.7e-14 82.8 221 34.4
Peaxi162Scf00802g00130 Petunia axillaris HOM05D005849 ORTHO05D004704 4.8e-14 82.4 81 53.1
Glyma.13G006500 Glycine max HOM05D005849 ORTHO05D004704 1.4e-13 80.9 226 34.1
Sc20g0004000 Simmondsia chinensis HOM05D005849 ORTHO05D004704 1.8e-13 80.5 214 37.4
AT2G04480 Arabidopsis thaliana HOM05D009495 ORTHO05D004704 2.4e-13 80.1 91 51.6
ClCG02G009210 Citrullus lanatus HOM05D005849 ORTHO05D004704 4.1e-13 79.3 184 37.0
Ca_06483_v3 Cicer arietinum L. HOM05D005849 ORTHO05D004704 5.3e-13 79.0 206 36.9
Glyma.20G062100 Glycine max HOM05D005849 ORTHO05D004704 5.3e-13 79.0 220 34.1
Lalb_Chr10g0107651 Lupinus albus HOM05D005849 ORTHO05D004704 9.1e-13 78.2 208 36.1
TPR.G35904 Trifolium pratense HOM05D005849 ORTHO05D004704 1.2e-12 77.8 226 36.7
Ciclev10009298m.g Citrus clementina HOM05D005849 ORTHO05D004704 1.6e-12 77.4 237 33.3
Lj1P796T11 Lonicera japonica HOM05D005849 ORTHO05D004704 2.0e-12 77.0 131 45.8
VMungo0540G2501 Vigna mungo HOM05D005849 ORTHO05D004704 2.0e-12 77.0 216 34.3
Ah.01g002540 Amaranthus hybridus HOM05D005849 ORTHO05D004704 2.6e-12 76.6 198 31.8
Thhalv10002998m.g Eutrema salsugineum HOM05D009495 ORTHO05D004704 2.6e-12 76.6 88 48.9
Medtr3g082780 Medicago truncatula HOM05D005849 ORTHO05D004704 2.6e-12 76.6 83 51.8
Os12g0498900 Oryza sativa ssp. japonica HOM05D005849 ORTHO05D004704 3.5e-12 76.3 185 35.1
Psat2g002880 Pisum sativum HOM05D005849 ORTHO05D004704 5.9e-12 75.5 124 48.4
Psat5g104280 Pisum sativum HOM05D005849 ORTHO05D004704 7.7e-12 75.1 88 53.4
AL3G42130 Arabidopsis lyrata HOM05D009495 ORTHO05D004704 1.0e-11 74.7 186 35.5
CARHR102390 Cardamine hirsuta HOM05D009495 ORTHO05D004704 1.0e-11 74.7 91 48.4
AT5G35870 Arabidopsis thaliana HOM05D009495 ORTHO05D004704 1.3e-11 74.3 92 51.1
THA.LOC104815364 Tarenaya hassleriana HOM05D005849 ORTHO05D004704 1.3e-11 74.3 84 54.8
AL7G44750 Arabidopsis lyrata HOM05D009495 ORTHO05D004704 3.8e-11 72.8 92 50.0
CiPaw.11G203200 Carya illinoinensis HOM05D005849 ORTHO05D004704 3.8e-11 72.8 130 42.3
Nitab4.5_0004125g0020 Nicotiana tabacum HOM05D005849 ORTHO05D004704 5.0e-11 72.4 167 37.1
Carub.0007s3167 Capsella rubella HOM05D009495 ORTHO05D004704 6.5e-11 72.0 92 51.1
A07p06700 Brassica napus HOM05D009495 ORTHO05D004704 1.1e-10 71.2 88 48.9
Carub.0003s2613 Capsella rubella HOM05D009495 ORTHO05D004704 1.1e-10 71.2 90 48.9
BraA07t28463Z Brassica rapa HOM05D009495 ORTHO05D004704 1.5e-10 70.9 88 48.9
arahy.Tifrunner.gnm1.ann1.8Y07GA Arachis hypogaea HOM05D005849 ORTHO05D004704 1.9e-10 70.5 108 48.1
BcaB06g26787 Brassica carinata HOM05D009495 ORTHO05D004704 1.9e-10 70.5 86 50.0
C07p10220 Brassica napus HOM05D009495 ORTHO05D004704 1.9e-10 70.5 88 48.9
QL08p004345 Quercus lobata HOM05D005849 ORTHO05D004704 2.5e-10 70.1 153 37.3
QL11p054311 Quercus lobata HOM05D005849 ORTHO05D004704 2.5e-10 70.1 153 37.3
Actinidia09789 Actinidia chinensis HOM05D005849 ORTHO05D004704 3.2e-10 69.7 130 39.2
THA.LOC104808845 Tarenaya hassleriana HOM05D005849 ORTHO05D004704 3.2e-10 69.7 203 36.0
TWI38G0138 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 3.2e-10 69.7 148 38.5
Sp7g06260 Schrenkiella parvula HOM05D009495 ORTHO05D004704 7.2e-10 68.6 112 43.8
Gohir.D01G076400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 9.4e-10 68.2 125 40.0
TPR.G11064 Trifolium pratense HOM05D005849 ORTHO05D004704 1.2e-09 67.8 85 48.2
BcaC06g35871 Brassica carinata HOM05D009495 ORTHO05D004704 1.6e-09 67.4 123 40.7
BolC7t41473H Brassica oleracea HOM05D009495 ORTHO05D004704 1.6e-09 67.4 123 40.7
VMungo0540G1302 Vigna mungo HOM05D005849 ORTHO05D004704 1.6e-09 67.4 71 52.1
Sp3g23270 Schrenkiella parvula HOM05D009495 ORTHO05D004704 2.1e-09 67.0 197 34.0
BcaB02g08048 Brassica carinata HOM05D009495 ORTHO05D004704 3.6e-09 66.2 92 50.0
Glyma.08G329000 Glycine max HOM05D005849 ORTHO05D004704 3.6e-09 66.2 79 48.1
Phvul.006G056700 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 3.6e-09 66.2 81 45.7
Thecc.07G014700 Theobroma cacao HOM05D005849 ORTHO05D004704 3.6e-09 66.2 226 31.9
Nitab4.5_0001701g0180 Nicotiana tabacum HOM05D005849 ORTHO05D004704 4.7e-09 65.9 153 34.6
BcaC04g21895 Brassica carinata HOM05D009495 ORTHO05D004704 6.1e-09 65.5 85 49.4
Prupe.4G242400 Prunus persica HOM05D005849 ORTHO05D004704 6.1e-09 65.5 144 38.9
Gohir.A01G091100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 8.0e-09 65.1 218 31.2
Aa31sc203G20 Aethionema arabicum HOM05D009495 ORTHO05D004704 1.4e-08 64.3 85 43.5
A04p10030 Brassica napus HOM05D009495 ORTHO05D004704 1.4e-08 64.3 176 37.5
BraA04t16665Z Brassica rapa HOM05D009495 ORTHO05D004704 1.4e-08 64.3 176 37.5
CARHR216740 Cardamine hirsuta HOM05D009495 ORTHO05D004704 1.4e-08 64.3 113 40.7
A09p20650 Brassica napus HOM05D009495 ORTHO05D004704 1.8e-08 63.9 85 48.2
BraA09t37669Z Brassica rapa HOM05D009495 ORTHO05D004704 1.8e-08 63.9 85 48.2
Thhalv10005712m.g Eutrema salsugineum HOM05D009495 ORTHO05D004704 2.3e-08 63.5 180 35.0
Cpa.g.sc12.153 Carica papaya HOM05D005849 ORTHO05D004704 6.7e-08 62.0 121 39.7
Gorai.002G099600 Gossypium raimondii HOM05D005849 ORTHO05D004704 1.1e-07 61.2 217 32.3
Lj6g0007370 Lotus japonicus HOM05D005849 ORTHO05D004704 2.6e-07 60.1 79 44.3
Lj8P178T38 Lonicera japonica HOM05D005849 ORTHO05D004704 3.3e-07 59.7 110 41.8
Lalb_Chr15g0082031 Lupinus albus HOM05D005849 ORTHO05D004704 3.3e-07 59.7 123 34.1
Nn1g04368 Nelumbo nucifera HOM05D005849 ORTHO05D004704 3.3e-07 59.7 111 37.8
TPR.G8608 Trifolium pratense HOM05D014115 ORTHO05D015996 4.4e-07 59.3 136 36.8
arahy.Tifrunner.gnm1.ann1.UTL0P7 Arachis hypogaea HOM05D005849 ORTHO05D004704 5.7e-07 58.9 79 45.6
CiPaw.12G137700 Carya illinoinensis HOM05D005849 ORTHO05D004704 7.5e-07 58.5 145 34.5
Lsat_1_v5_gn_5_122020 Lactuca sativa HOM05D005849 ORTHO05D004704 7.5e-07 58.5 104 40.4
ATR0827G126 Amborella trichopoda HOM05D005849 ORTHO05D004704 9.7e-07 58.2 115 36.5
arahy.Tifrunner.gnm1.ann1.S46AGL Arachis hypogaea HOM05D005849 ORTHO05D004704 9.7e-07 58.2 232 33.6
Sabra16G0240400 Salix brachista HOM05D005849 ORTHO05D004704 9.7e-07 58.2 126 34.9
CANSAT11G2057 Cannabis sativa HOM05D005849 ORTHO05D004704 1.3e-06 57.8 239 33.9
C09p26070 Brassica napus HOM05D009495 ORTHO05D004704 2.2e-06 57.0 192 34.4
BolC9t55510H Brassica oleracea HOM05D009495 ORTHO05D004704 2.2e-06 57.0 192 34.4
Sed0024428 Sechium edule HOM05D031229 ORTHO05D029008 2.8e-06 56.6 82 41.5
Zm00001eb409540 Zea mays HOM05D005849 ORTHO05D004704 6.3e-06 55.5 72 41.7


User provided reference genes

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