Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 0.0e+00 1293.9 732 100.0
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 1.6e-162 577.4 787 52.7
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 1.8e-147 527.3 788 48.7
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 2.8e-143 513.5 778 53.2
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 1.4e-142 511.1 813 45.9
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 5.2e-142 509.2 775 49.5
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 6.3e-140 502.3 806 48.4
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 7.8e-138 495.4 769 51.1
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 3.9e-137 493.0 804 47.0
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 9.5e-136 488.4 787 49.9
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 3.6e-135 486.5 758 49.5
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 6.1e-135 485.7 764 50.5
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 4.4e-133 479.6 747 50.7
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 1.3e-132 478.0 741 48.3
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 6.4e-132 475.7 739 47.1
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 3.5e-130 469.9 794 46.1
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 5.0e-129 466.1 784 46.0
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.2e-127 461.5 763 46.4
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 6.2e-127 459.1 724 50.0
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 6.2e-127 459.1 758 45.9
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 1.1e-126 458.4 791 44.8
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.4e-126 458.0 790 44.4
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 5.2e-126 456.1 768 45.4
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 5.2e-126 456.1 789 45.6
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.5e-125 454.5 797 44.0
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 2.0e-125 454.1 723 45.5
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.4e-125 453.0 784 45.8
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 6.4e-124 449.1 798 44.5
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 6.4e-124 449.1 780 44.7
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 4.6e-122 443.0 792 45.3
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 1.0e-121 441.8 793 47.8
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 1.3e-121 441.4 785 45.0
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.3e-121 440.7 794 44.3
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 5.1e-121 439.5 779 45.8
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 1.1e-120 438.3 793 45.9
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 1.5e-120 438.0 778 44.3
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 7.3e-120 435.6 727 47.6
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 6.2e-119 432.6 769 45.0
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 8.1e-119 432.2 790 44.2
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 8.9e-118 428.7 706 44.8
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 2.9e-116 423.7 722 44.7
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 1.1e-115 421.8 772 46.5
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 2.4e-115 420.6 796 42.6
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 4.1e-115 419.9 789 44.1
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 4.6e-114 416.4 749 43.4
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 6.0e-114 416.0 715 43.2
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 1.0e-113 415.2 762 44.8
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 3.9e-113 413.3 795 45.2
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 6.6e-113 412.5 850 43.4
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 3.3e-112 410.2 782 47.2
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 4.4e-109 399.8 831 43.2
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 5.8e-109 399.4 754 44.3
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 9.9e-109 398.7 734 46.0
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 2.2e-108 397.5 840 42.1
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 1.1e-107 395.2 787 42.2
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 7.1e-107 392.5 711 48.1
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 1.3e-105 388.3 774 40.2
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 3.9e-105 386.7 695 43.5
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 5.1e-105 386.3 704 43.5
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 1.3e-103 381.7 750 43.7
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 8.1e-103 379.0 737 44.6
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 6.9e-102 375.9 771 40.7
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 6.9e-102 375.9 646 46.1
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 9.0e-102 375.6 688 43.6
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 1.5e-101 374.8 719 41.3
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 4.4e-101 373.2 764 41.5
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 5.8e-101 372.9 765 44.8
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 7.6e-101 372.5 746 42.5
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 2.9e-100 370.5 747 43.4
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 7.1e-99 365.9 750 41.3
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.3e-97 360.9 665 45.0
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 6.6e-97 359.4 733 42.3
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.1e-96 358.6 708 41.1
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 1.9e-96 357.8 746 42.4
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 3.6e-95 353.6 762 40.9
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 3.6e-95 353.6 741 44.1
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 3.6e-95 353.6 778 40.6
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 4.0e-94 350.1 636 42.3
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 1.2e-93 348.6 819 43.8
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 5.8e-93 346.3 715 44.3
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 9.9e-93 345.5 772 39.1
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 4.9e-92 343.2 763 40.2
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.9e-91 341.3 709 43.4
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 4.2e-91 340.1 711 42.6
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 3.7e-87 327.0 742 40.3
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 4.8e-87 326.6 727 40.3
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 1.1e-86 325.5 745 39.2
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 2.4e-86 324.3 737 41.4
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 4.0e-86 323.6 708 40.0
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 4.9e-84 316.6 791 36.2
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 1.4e-83 315.1 676 44.2
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 4.6e-82 310.1 702 42.7
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 1.1e-80 305.4 745 38.8
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 1.9e-80 304.7 704 38.6
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 3.3e-80 303.9 711 42.2
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 7.4e-80 302.8 772 37.6
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 9.6e-80 302.4 706 42.4
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.3e-79 302.0 683 40.8
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 1.6e-79 301.6 717 41.7
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 3.7e-79 300.4 747 38.7
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 1.4e-78 298.5 745 38.5
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 3.1e-78 297.4 718 37.7
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 4.1e-78 297.0 798 37.8
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 2.6e-77 294.3 767 38.9
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 2.6e-77 294.3 669 39.2
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 1.0e-76 292.4 799 38.9
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 8.4e-76 289.3 782 36.4
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 2.5e-75 287.7 745 36.8
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 4.2e-75 287.0 699 36.5
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 3.5e-74 283.9 768 36.8
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 1.8e-73 281.6 722 41.0
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 4.8e-71 273.5 767 37.5
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 6.3e-71 273.1 703 37.6
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 1.3e-68 265.4 675 36.3
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 5.5e-67 260.0 750 37.3
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 7.4e-64 249.6 704 40.2
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 2.8e-63 247.7 739 38.7
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 6.3e-63 246.5 735 35.5
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 5.3e-62 243.4 739 33.6
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 6.9e-62 243.0 747 33.6
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 6.9e-62 243.0 747 33.6
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 1.7e-60 238.4 709 34.1
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 5.0e-60 236.9 746 33.2
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 3.6e-58 230.7 747 32.4
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 3.9e-57 227.3 757 32.9
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 1.1e-56 225.7 618 34.3
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.5e-56 225.3 593 37.4
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 3.7e-55 220.7 708 32.3
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 4.8e-55 220.3 597 36.9
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 3.5e-53 214.2 850 32.2
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.5e-53 213.8 708 32.3
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 3.8e-52 210.7 861 31.9
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 2.7e-50 204.5 701 33.4
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 3.6e-50 204.1 709 31.9
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 3.0e-49 201.1 682 32.1
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 1.5e-48 198.7 648 34.7
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.5e-48 198.7 759 30.8
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 2.0e-48 198.4 689 32.8
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 2.6e-48 198.0 652 34.4
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 2.6e-48 198.0 656 34.5
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 5.7e-48 196.8 484 37.2
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 2.2e-47 194.9 661 33.7
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 4.8e-47 193.7 873 30.1
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 1.2e-42 179.1 691 33.1
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 1.8e-41 175.3 378 40.2
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 6.3e-39 166.8 260 44.2
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.2e-37 162.5 399 36.6
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.6e-37 162.2 699 29.2
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 4.5e-37 160.6 177 57.1
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 1.7e-36 158.7 812 28.6
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 2.2e-36 158.3 207 52.2
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 2.6e-32 144.8 458 32.3
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 1.1e-30 139.4 163 50.9
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 9.2e-30 136.3 142 56.3
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 9.2e-30 136.3 261 39.5
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 1.6e-29 135.6 284 40.1
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 3.8e-28 131.0 151 55.6
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 1.5e-24 119.0 103 67.0
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 2.0e-24 118.6 293 35.5
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 9.8e-24 116.3 119 59.7
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 3.2e-22 111.3 116 54.3
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.0e-20 106.3 498 30.5
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 1.6e-18 99.0 203 38.4
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 5.8e-16 90.5 180 36.1
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.3e-15 89.4 671 25.8
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 9.2e-14 83.2 248 30.6
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 3.9e-12 77.8 377 28.1
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 6.2e-10 70.5 368 30.2
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 2.3e-09 68.6 48 70.8
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 3.1e-09 68.2 76 57.9
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 6.8e-09 67.0 342 30.1
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.3e-07 62.8 296 30.1
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 3.7e-07 61.2 301 29.9
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 6.4e-07 60.5 322 30.7
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 8.3e-07 60.1 371 27.5
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 5.4e-06 57.4 333 29.1
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 9.2e-06 56.6 355 27.3


User provided reference genes

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