Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 3.5e-312 1074.7 518 100.0
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 9.8e-212 740.3 525 68.2
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 1.3e-211 740.0 518 70.3
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 4.6e-209 731.5 523 69.2
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 4.6e-209 731.5 536 67.5
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 1.1e-207 726.9 532 67.3
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 2.5e-207 725.7 526 67.9
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 3.3e-207 725.3 523 66.7
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 1.2e-206 723.4 522 67.4
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.8e-206 722.2 529 67.9
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.8e-206 722.2 529 67.9
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 6.2e-206 721.1 512 68.4
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 5.2e-205 718.0 522 67.0
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 2.0e-204 716.1 517 68.1
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.4e-204 715.3 529 67.3
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.4e-204 715.3 529 67.3
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 4.4e-204 714.9 528 66.5
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 7.5e-204 714.1 537 65.7
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 1.3e-203 713.4 519 65.5
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 4.9e-203 711.4 520 67.3
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 4.9e-203 711.4 525 65.1
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 6.4e-203 711.1 533 65.7
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.4e-202 709.9 525 65.7
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.4e-202 709.9 520 67.1
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.4e-202 709.1 520 67.1
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 3.2e-202 708.8 527 66.8
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 5.4e-202 708.0 514 66.7
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 7.0e-202 707.6 538 64.3
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 1.6e-201 706.4 517 66.3
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 3.5e-201 705.3 518 66.6
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 4.6e-201 704.9 525 65.1
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 1.0e-200 703.7 533 63.6
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 3.9e-200 701.8 518 67.0
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 6.6e-200 701.0 528 65.7
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 6.6e-200 701.0 517 66.2
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 6.6e-200 701.0 519 66.1
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 6.6e-200 701.0 535 63.2
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 8.6e-200 700.7 525 65.0
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 1.1e-199 700.3 517 66.9
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.1e-199 700.3 533 64.0
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.1e-199 700.3 533 64.0
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 1.9e-199 699.5 520 65.0
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.5e-199 699.1 523 64.8
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.6e-198 695.3 519 64.7
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 6.2e-198 694.5 526 64.4
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 6.2e-198 694.5 532 65.2
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 6.2e-198 694.5 528 65.7
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 6.2e-198 694.5 523 64.2
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 6.2e-198 694.5 537 62.2
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.1e-197 693.7 519 64.5
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 1.8e-197 693.0 534 63.1
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 6.8e-197 691.0 533 63.0
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.2e-196 690.3 526 63.5
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 1.5e-196 689.9 517 65.0
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 2.6e-196 689.1 514 62.6
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 7.5e-196 687.6 555 62.2
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 9.8e-196 687.2 517 65.0
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 1.7e-195 686.4 522 63.2
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.7e-195 686.4 537 62.4
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 2.2e-195 686.0 521 64.7
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 2.4e-194 682.6 549 62.8
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 3.2e-194 682.2 543 62.4
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.6e-193 679.9 526 63.3
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 3.5e-193 678.7 522 62.8
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 2.3e-192 676.0 516 65.5
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 3.9e-192 675.2 555 61.3
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 3.9e-192 675.2 544 62.5
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 2.5e-191 672.5 555 60.5
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 2.5e-191 672.5 555 60.5
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 4.3e-191 671.8 517 62.7
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 5.6e-191 671.4 532 63.3
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 1.6e-190 669.8 536 61.9
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 1.6e-190 669.8 535 62.2
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 2.1e-190 669.5 545 62.2
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 8.1e-190 667.5 529 61.6
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 8.1e-190 667.5 522 63.8
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 1.1e-189 667.2 535 62.2
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 4.0e-189 665.2 536 61.4
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 6.8e-189 664.5 524 60.7
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 2.6e-188 662.5 545 61.1
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 1.1e-186 657.1 522 60.9
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 4.1e-186 655.2 526 61.8
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 7.1e-186 654.4 523 62.0
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 8.6e-184 647.5 533 60.0
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.1e-183 647.1 530 60.2
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.1e-183 647.1 521 62.2
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.5e-183 646.0 530 59.4
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 4.3e-183 645.2 531 60.1
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 9.6e-183 644.0 530 59.4
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 3.1e-181 639.0 517 61.7
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 5.2e-181 638.3 520 61.2
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 5.8e-180 634.8 463 66.3
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 7.6e-180 634.4 539 58.8
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 8.4e-179 630.9 523 59.3
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 2.4e-178 629.4 512 58.4
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 1.6e-177 626.7 523 60.0
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 7.3e-175 617.8 505 59.2
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 7.3e-175 617.8 521 58.9
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 1.5e-172 610.1 525 58.3
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 2.0e-172 609.8 518 59.5
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 5.8e-172 608.2 522 58.8
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.7e-171 606.7 465 60.6
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 1.8e-168 596.7 458 63.1
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.1e-167 594.0 527 56.0
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 1.1e-167 594.0 409 68.0
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.1e-166 589.7 486 58.8
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 2.6e-164 582.8 401 69.3
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 8.4e-163 577.8 470 61.1
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 5.1e-160 568.5 456 61.8
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 2.4e-157 559.7 448 58.5
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.8e-150 536.2 388 65.2
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 6.9e-149 531.6 432 61.6
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 7.2e-146 521.5 311 77.8
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 1.1e-143 514.2 489 54.2
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 5.7e-143 511.9 290 81.4
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 7.4e-135 485.0 311 69.8
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 1.3e-134 484.2 306 72.5
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 2.4e-133 479.9 311 69.1
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.2e-124 451.1 388 58.0
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 4.4e-119 432.6 288 68.4
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 2.8e-118 429.9 580 40.7
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 4.8e-118 429.1 529 42.5
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 1.1e-117 427.9 511 44.2
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 3.7e-110 402.9 246 76.0
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 1.6e-105 387.5 238 76.5
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 5.7e-103 379.0 239 72.0
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 6.8e-96 355.5 537 42.6
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 1.1e-88 331.6 343 53.1
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 3.2e-85 320.1 199 74.9
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 5.2e-80 302.8 326 48.8
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 4.9e-78 296.2 200 67.5
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 1.6e-76 291.2 239 60.3
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 1.4e-72 278.1 271 55.0
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 2.4e-72 277.3 166 79.5
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 2.5e-58 230.7 226 55.3
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 1.3e-57 228.4 196 59.2
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 3.6e-57 226.9 196 59.2
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 2.9e-54 217.2 218 53.7
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 2.5e-50 204.1 189 52.9
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 3.1e-48 197.2 129 65.9
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 3.1e-48 197.2 129 65.9
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 3.1e-48 197.2 432 31.0
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 2.6e-47 194.1 124 69.4
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 7.9e-44 182.6 109 78.9
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 1.9e-37 161.4 270 39.3
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 5.5e-37 159.8 191 48.7
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 1.2e-36 158.7 179 46.9
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 6.0e-36 156.4 108 63.9
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 1.3e-33 148.7 165 44.8
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 2.8e-33 147.5 263 35.0
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 1.4e-32 145.2 268 34.7
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.5e-31 141.7 226 38.9
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 7.6e-31 139.4 98 68.4
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 8.5e-30 136.0 176 44.9
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 2.2e-25 121.3 78 67.9
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 2.2e-25 121.3 78 67.9
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 8.2e-25 119.4 85 63.5
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 2.4e-24 117.9 102 58.8
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 2.0e-23 114.8 95 58.9
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 8.8e-19 99.4 72 68.1
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 2.0e-15 88.2 57 68.4
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 9.4e-13 79.3 96 42.7
Eucgr.F00781 Eucalyptus grandis HOM05D004336 ORTHO05D192954 1.3e-09 68.9 172 35.5
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.6e-07 62.0 35 82.9


User provided reference genes

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