Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 3.4e-110 401.7 216 100.0
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.0e-37 161.0 156 60.3
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 6.6e-37 158.3 146 63.0
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 1.5e-36 157.1 188 56.9
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 5.6e-36 155.2 188 55.3
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 9.6e-36 154.5 115 70.4
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 1.3e-35 154.1 144 61.8
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 4.8e-35 152.1 177 53.7
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 2.4e-34 149.8 182 53.3
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 3.1e-34 149.4 93 80.6
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 3.1e-34 149.4 189 50.8
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 5.3e-34 148.7 99 77.8
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 6.9e-34 148.3 109 72.5
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 6.9e-34 148.3 100 79.0
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 6.9e-34 148.3 185 51.9
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 1.2e-33 147.5 185 51.4
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 1.2e-33 147.5 101 75.2
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 1.2e-33 147.5 194 50.0
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 1.2e-33 147.5 118 68.6
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 2.0e-33 146.7 188 51.1
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 2.0e-33 146.7 110 72.7
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 2.0e-33 146.7 110 72.7
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 2.6e-33 146.4 146 59.6
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 4.5e-33 145.6 109 68.8
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 4.5e-33 145.6 180 52.2
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 4.5e-33 145.6 110 71.8
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 5.8e-33 145.2 132 61.4
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 7.6e-33 144.8 106 72.6
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 7.6e-33 144.8 174 52.9
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 7.6e-33 144.8 97 77.3
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 9.9e-33 144.4 122 65.6
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 1.3e-32 144.1 128 62.5
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 2.2e-32 143.3 121 68.6
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 2.2e-32 143.3 125 66.4
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 3.8e-32 142.5 176 52.8
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 3.8e-32 142.5 184 51.6
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 4.9e-32 142.1 93 78.5
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 4.9e-32 142.1 201 49.3
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 4.9e-32 142.1 173 50.3
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 6.4e-32 141.7 97 73.2
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 6.4e-32 141.7 127 63.8
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 8.4e-32 141.4 177 51.4
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 8.4e-32 141.4 114 70.2
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 1.1e-31 141.0 97 73.2
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 1.1e-31 141.0 200 49.0
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 1.1e-31 141.0 108 69.4
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 1.4e-31 140.6 93 78.5
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 1.4e-31 140.6 93 78.5
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 1.4e-31 140.6 99 75.8
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 1.4e-31 140.6 96 72.9
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 1.4e-31 140.6 96 72.9
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 1.4e-31 140.6 96 72.9
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 1.4e-31 140.6 190 47.9
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 1.9e-31 140.2 107 66.4
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 1.9e-31 140.2 129 62.0
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 2.4e-31 139.8 130 60.8
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 3.2e-31 139.4 186 51.6
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 4.2e-31 139.0 133 60.2
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 5.4e-31 138.7 181 51.9
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 7.1e-31 138.3 180 50.0
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 7.1e-31 138.3 180 50.0
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 9.3e-31 137.9 181 50.8
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 9.3e-31 137.9 143 59.4
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 1.2e-30 137.5 93 74.2
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 1.2e-30 137.5 161 49.1
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 1.2e-30 137.5 176 52.3
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.2e-30 137.5 187 51.9
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 1.2e-30 137.5 192 50.5
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 1.6e-30 137.1 93 73.1
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 1.6e-30 137.1 181 50.3
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 1.6e-30 137.1 103 68.0
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 2.1e-30 136.7 111 66.7
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 2.7e-30 136.3 94 74.5
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.7e-30 136.3 128 64.8
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 3.5e-30 136.0 195 49.7
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 3.5e-30 136.0 111 66.7
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 3.5e-30 136.0 127 59.8
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 4.6e-30 135.6 124 62.9
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 6.0e-30 135.2 182 50.0
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 6.0e-30 135.2 126 57.9
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 7.9e-30 134.8 109 69.7
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 7.9e-30 134.8 104 67.3
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 1.0e-29 134.4 182 47.8
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 1.3e-29 134.0 118 64.4
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 1.3e-29 134.0 104 67.3
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 1.8e-29 133.7 181 47.5
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.3e-29 133.3 183 50.8
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 3.9e-29 132.5 178 50.0
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 3.9e-29 132.5 128 62.5
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 3.9e-29 132.5 91 72.5
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 5.1e-29 132.1 145 54.5
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 6.7e-29 131.7 109 67.0
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 1.1e-28 131.0 183 47.5
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.1e-28 131.0 131 55.7
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 1.9e-28 130.2 109 67.0
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 3.3e-28 129.4 101 72.3
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 3.3e-28 129.4 94 70.2
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 3.3e-28 129.4 119 61.3
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 3.3e-28 129.4 83 79.5
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 9.6e-28 127.9 101 70.3
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 1.6e-27 127.1 94 69.1
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 4.8e-27 125.6 96 63.5
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 1.2e-25 120.9 154 48.1
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 1.2e-25 120.9 212 43.4
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 2.6e-25 119.8 121 55.4
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 9.9e-25 117.9 177 48.6
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 1.4e-23 114.0 77 75.3
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 1.4e-23 114.0 116 54.3
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 7.1e-23 111.7 82 68.3
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 7.9e-22 108.2 72 79.2
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 3.0e-21 106.3 73 71.2
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 5.6e-20 102.1 127 48.0
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 9.6e-20 101.3 108 53.7
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 2.1e-19 100.1 78 61.5
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 2.8e-19 99.8 128 50.0
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 2.6e-17 93.2 149 44.3
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.4e-15 87.4 71 66.2
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 6.0e-14 82.0 145 43.4
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 3.0e-13 79.7 105 40.0
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 5.1e-13 79.0 62 71.0
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 6.7e-13 78.6 59 74.6
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 1.9e-12 77.0 113 44.2
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 3.3e-12 76.3 140 42.1
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 1.5e-09 67.4 146 42.5
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 2.6e-09 66.6 42 76.2
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 7.6e-09 65.1 85 38.8
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 8.5e-08 61.6 75 54.7
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 1.4e-07 60.8 118 36.4
AagrBONN_evm.TU.Sc2ySwM_368.656 Anthoceros agrestis HOM05D005889 ORTHO05D007495 1.9e-07 60.5 81 42.0
TAR629G0556 Trochodendron aralioides HOM05D001690 ORTHO05D009096 9.3e-07 58.2 58 53.4
Gohir.D12G031850 Gossypium hirsutum HOM05D001962 ORTHO05D019237 2.7e-06 56.6 96 41.7
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 4.6e-06 55.8 109 41.3


User provided reference genes

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