Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2275 Punica granatum HOM05D007146 ORTHO05D008971 0.0e+00 1235.3 616 100.0
Eucgr.F01450 Eucalyptus grandis HOM05D007146 ORTHO05D008971 4.0e-196 688.7 532 66.9
CiPaw.11G069000 Carya illinoinensis HOM05D007146 ORTHO05D008971 7.4e-190 667.9 556 63.1
Atru.chr2.1879 Acer truncatum HOM05D007146 ORTHO05D008971 3.1e-188 662.5 561 62.7
Prupe.4G143400 Prunus persica HOM05D007146 ORTHO05D008971 9.0e-188 661.0 556 62.8
RcHm_v2.0_Chr5g0027001 Rosa chinensis HOM05D007146 ORTHO05D008971 7.6e-187 657.9 553 61.8
FvH4_3g16020 Fragaria vesca HOM05D007146 ORTHO05D008971 2.4e-185 652.9 566 60.2
FAN11G2635 Fragaria x ananassa HOM05D007146 ORTHO05D008971 5.5e-185 651.7 553 61.3
TWI38G0129 Tripterygium wilfordii HOM05D007146 ORTHO05D008971 1.5e-182 643.7 593 58.3
Potri.007G065300 Populus trichocarpa HOM05D007146 ORTHO05D008971 4.3e-182 642.1 560 61.1
COL.COLO4_05069 Corchorus olitorius HOM05D007146 ORTHO05D008971 9.6e-182 641.0 556 59.2
GSVIVG01020477001 Vitis vinifera HOM05D007146 ORTHO05D008971 3.7e-181 639.0 537 62.0
MD05G1215600 Malus domestica HOM05D007146 ORTHO05D008971 4.8e-181 638.6 560 61.1
THA.LOC104812351 Tarenaya hassleriana HOM05D007146 ORTHO05D008971 1.1e-180 637.5 532 62.0
Sabra07G0052900 Salix brachista HOM05D007146 ORTHO05D008971 1.2e-179 634.0 558 60.6
AT1G16650 Arabidopsis thaliana HOM05D007146 ORTHO05D008971 2.6e-179 632.9 527 61.1
AL1G28820 Arabidopsis lyrata HOM05D007146 ORTHO05D008971 5.8e-179 631.7 526 61.0
Carub.0001s1639 Capsella rubella HOM05D007146 ORTHO05D008971 1.1e-177 627.5 528 59.5
CSS0042492 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 9.3e-177 624.4 539 60.7
Thhalv10007372m.g Eutrema salsugineum HOM05D007146 ORTHO05D008971 2.1e-176 623.2 528 60.2
A06p12640 Brassica napus HOM05D007146 ORTHO05D008971 2.7e-176 622.9 525 61.0
C05p14940 Brassica napus HOM05D007146 ORTHO05D008971 1.0e-175 620.9 525 60.8
Nn7g37748 Nelumbo nucifera HOM05D007146 ORTHO05D008971 1.1e-174 617.5 573 59.0
BolC5t30209H Brassica oleracea HOM05D007146 ORTHO05D008971 1.9e-174 616.7 526 60.6
Gorai.004G269700 Gossypium raimondii HOM05D007146 ORTHO05D008971 2.5e-174 616.3 557 58.2
CSS0033590 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 5.7e-174 615.1 592 56.4
DCAR_009636 Daucus carota HOM05D007146 ORTHO05D008971 1.8e-172 610.1 568 57.6
Lalb_Chr25g0285151 Lupinus albus HOM05D007146 ORTHO05D008971 4.1e-172 609.0 553 57.9
Sopen07g034520 Solanum pennellii HOM05D007146 ORTHO05D008971 5.3e-172 608.6 536 60.6
BcaC05g25529 Brassica carinata HOM05D007146 ORTHO05D008971 6.9e-172 608.2 533 59.7
FAN25G2803 Fragaria x ananassa HOM05D007146 ORTHO05D008971 9.0e-172 607.8 531 59.9
Glyma.08G173200 Glycine max HOM05D007146 ORTHO05D008971 9.0e-172 607.8 549 58.1
Solyc07g066340.3 Solanum lycopersicum HOM05D007146 ORTHO05D008971 1.5e-171 607.1 546 59.9
Phvul.005G055600 Phaseolus vulgaris HOM05D007146 ORTHO05D008971 2.6e-171 606.3 551 57.9
ClCG11G016310 Citrullus lanatus HOM05D007146 ORTHO05D008971 3.4e-171 605.9 558 57.7
Aa31LG7G1140 Aethionema arabicum HOM05D007146 ORTHO05D008971 1.0e-170 604.4 527 58.4
PGSC0003DMG401022133 Solanum tuberosum HOM05D007146 ORTHO05D008971 1.3e-170 604.0 538 59.5
Rhsim06G0237700 Rhododendron simsii HOM05D007146 ORTHO05D008971 1.9e-169 600.1 605 54.4
BraA06t24425Z Brassica rapa HOM05D007146 ORTHO05D008971 3.2e-169 599.4 545 58.0
CAN.G943.29 Capsicum annuum HOM05D007146 ORTHO05D008971 4.2e-169 599.0 538 58.2
TPR.G9764 Trifolium pratense HOM05D007146 ORTHO05D008971 9.3e-169 597.8 552 57.4
CsaV3_2G022170 Cucumis sativus L. HOM05D007146 ORTHO05D008971 1.2e-168 597.4 543 57.1
Cc05_g15970 Coffea canephora HOM05D007146 ORTHO05D008971 2.7e-168 596.3 564 56.6
vmacro11655 Vaccinium macrocarpon HOM05D007146 ORTHO05D008971 1.8e-167 593.6 619 53.5
Sed0009835 Sechium edule HOM05D007146 ORTHO05D008971 2.3e-167 593.2 542 58.3
SGA_v2.0_scaffold186G40227 Striga asiatica HOM05D007146 ORTHO05D008971 6.7e-167 591.7 542 57.4
Lj3g0000430 Lotus japonicus HOM05D007146 ORTHO05D008971 1.5e-166 590.5 548 57.3
Peaxi162Scf00232g01133 Petunia axillaris HOM05D007146 ORTHO05D008971 9.7e-166 587.8 535 57.6
Medtr2g064450 Medicago truncatula HOM05D007146 ORTHO05D008971 1.3e-165 587.4 552 56.5
Aqoxy4G00043_Aqoxy4G00044 Aquilegia oxysepala HOM05D007146 ORTHO05D008971 1.8e-164 583.6 578 54.3
SalBow8G2846 Salvia bowleyana HOM05D007146 ORTHO05D008971 4.1e-164 582.4 553 55.9
Oeu002808.1 Olea europaea HOM05D007146 ORTHO05D008971 2.5e-161 573.2 635 51.8
HanXRQChr05g0160631 Helianthus annuus HOM05D007146 ORTHO05D008971 5.5e-161 572.0 525 56.2
Manes.03G082700 Manihot esculenta HOM05D007146 ORTHO05D008971 1.2e-160 570.9 552 58.0
arahy.Tifrunner.gnm1.ann1.L14HV7 Arachis hypogaea HOM05D007146 ORTHO05D008971 3.6e-160 569.3 595 52.8
arahy.Tifrunner.gnm1.ann1.5W7G8A Arachis hypogaea HOM05D007146 ORTHO05D008971 2.3e-159 566.6 595 52.8
PSO675G2245 Papaver somniferum HOM05D007146 ORTHO05D008971 4.3e-158 562.4 570 54.2
FAN21G1125 Fragaria x ananassa HOM05D007146 ORTHO05D008971 1.5e-155 553.9 494 58.7
PSO541G2405 Papaver somniferum HOM05D007146 ORTHO05D008971 5.9e-155 552.0 568 53.7
ATR1098G072 Amborella trichopoda HOM05D007146 ORTHO05D008971 6.5e-154 548.5 570 51.2
Gohir.D08G252900 Gossypium hirsutum HOM05D007146 ORTHO05D008971 2.3e-151 540.0 505 56.6
EL10Ac4g08556 Beta vulgaris HOM05D007146 ORTHO05D008971 7.4e-150 535.0 507 55.8
HPP92_018693 Vanilla planifolia HOM05D007146 ORTHO05D008971 9.7e-150 534.6 574 51.2
Duzib213G0540 Durio zibethinus HOM05D007146 ORTHO05D008971 8.0e-144 515.0 516 56.2
Lsat_1_v5_gn_9_46800 Lactuca sativa HOM05D007146 ORTHO05D008971 2.3e-143 513.5 553 51.2
MELO3C010557.2 Cucumis melo HOM05D007146 ORTHO05D008971 1.5e-142 510.8 550 52.0
Nitab4.5_0002933g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 2.6e-142 510.0 534 52.8
VMungo1080G0158 Vigna mungo HOM05D007146 ORTHO05D008971 3.3e-142 509.6 491 55.8
Os12g0610500 Oryza sativa ssp. japonica HOM05D007146 ORTHO05D008971 1.7e-141 507.3 560 48.6
MBI02_g25677_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 6.3e-141 505.4 522 53.4
HPP92_018676 Vanilla planifolia HOM05D007146 ORTHO05D008971 7.7e-139 498.4 516 53.5
Psat1g002520 Pisum sativum HOM05D007146 ORTHO05D008971 1.6e-136 490.7 411 61.8
Nitab4.5_0000313g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 2.5e-129 466.8 369 63.4
Zm00001eb135900 Zea mays HOM05D007146 ORTHO05D008971 1.1e-124 451.4 490 49.6
Gohir.A08G232700 Gossypium hirsutum HOM05D007146 ORTHO05D008971 2.3e-122 443.7 497 50.7
unitig_749.g13702 Utricularia gibba HOM05D007146 ORTHO05D008971 5.0e-122 442.6 556 47.7
Pp3c14_6050 Physcomitrium patens HOM05D007146 ORTHO05D008971 9.8e-110 401.7 550 43.5
Migut.M01565 Erythranthe guttata HOM05D007146 ORTHO05D008971 2.4e-108 397.1 349 57.0
SMO143G0033 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 1.2e-104 384.8 521 42.6
Ah.06g187050 Amaranthus hybridus HOM05D007146 ORTHO05D008971 1.4e-103 381.3 433 48.3
Pp3c1_21800 Physcomitrium patens HOM05D007146 ORTHO05D008971 2.6e-102 377.1 594 37.5
Ciclev10021587m.g Citrus clementina HOM05D007146 ORTHO05D008971 2.5e-97 360.5 279 66.3
Sp1g14790 Schrenkiella parvula HOM05D007146 ORTHO05D008971 2.5e-97 360.5 333 56.5
TAR627G0841 Trochodendron aralioides HOM05D007146 ORTHO05D008971 4.3e-97 359.8 389 52.4
Lj8C186T10 Lonicera japonica HOM05D007146 ORTHO05D008971 7.3e-97 359.0 365 58.1
Thecc.07G156000 Theobroma cacao HOM05D007146 ORTHO05D008971 2.0e-94 350.9 273 64.5
AagrBONN_evm.TU.Sc2ySwM_368.537 Anthoceros agrestis HOM05D007146 ORTHO05D008971 8.1e-88 328.9 415 45.8
MSTRG.16117 Avicennia marina HOM05D007146 ORTHO05D008971 5.8e-86 322.8 282 58.5
AUR62041925 Chenopodium quinoa HOM05D007146 ORTHO05D008971 1.3e-74 285.0 285 53.3
CDE03G0452 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 4.0e-71 273.5 419 43.9
Ca_03693_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 2.2e-69 267.7 212 62.3
Thecc.07G156300 Theobroma cacao HOM05D007146 ORTHO05D008971 2.9e-61 240.7 246 54.5
Ciclev10022203m.g Citrus clementina HOM05D007146 ORTHO05D008971 1.3e-53 215.3 211 56.4
SEGI_13316 Sequoiadendron giganteum HOM05D007146 ORTHO05D008971 6.1e-51 206.5 241 47.3
CARHR017120 Cardamine hirsuta HOM05D007146 ORTHO05D008971 1.0e-42 179.1 169 59.2
Cpa.g.sc10.30 Carica papaya HOM05D007146 ORTHO05D008971 2.6e-41 174.5 187 54.0
Ca_03695_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 8.2e-40 169.5 189 50.3
Ca_03700_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 8.2e-40 169.5 189 50.3
Hund10273 Selenicereus undatus HOM05D007146 ORTHO05D008971 1.8e-39 168.3 123 61.0
DCAR_002379 Daucus carota HOM05D007146 ORTHO05D008971 1.0e-37 162.5 196 48.0
Cpa.g.sc10.33 Carica papaya HOM05D007146 ORTHO05D008971 2.1e-35 154.8 97 70.1
Ah.06g187020 Amaranthus hybridus HOM05D007146 ORTHO05D008971 3.6e-35 154.1 165 51.5
CDE03G0405 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 3.3e-33 147.5 117 52.1
Sc07g0003080 Simmondsia chinensis HOM05D007146 ORTHO05D008971 9.4e-28 129.4 93 65.6
Hund10306 Selenicereus undatus HOM05D007146 ORTHO05D008971 6.3e-24 116.7 159 48.4
Haze_08528 Corylus avellana HOM05D007146 ORTHO05D008971 3.7e-16 90.9 132 43.9
MBI02_g40068_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 3.6e-11 74.3 151 38.4
SMO246G0022 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 4.7e-11 73.9 96 46.9
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 3.4e-09 67.8 75 46.7
Cfa023972 Carpinus fangiana HOM05D007146 ORTHO05D008971 4.4e-09 67.4 310 23.5
Glyma.13G224100 Glycine max HOM05D000062 ORTHO05D000043 8.3e-08 63.2 104 35.6
FAN16G0561 Fragaria x ananassa HOM05D007146 ORTHO05D008971 1.2e-06 59.3 44 68.2
Phvul.006G170300 Phaseolus vulgaris HOM05D000062 ORTHO05D000043 1.2e-06 59.3 104 34.6
VMungo0540G1625 Vigna mungo HOM05D000062 ORTHO05D000043 2.7e-06 58.2 68 39.7


User provided reference genes

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