Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 7.6e-229 797.0 448 100.0
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 1.0e-52 211.8 296 40.9
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 3.1e-52 210.3 251 47.0
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 4.0e-52 209.9 319 40.1
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 1.2e-51 208.4 215 50.2
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.5e-51 208.0 320 40.0
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 2.0e-51 207.6 250 44.8
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 2.0e-51 207.6 321 39.3
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 4.4e-51 206.5 259 45.2
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 4.4e-51 206.5 259 45.2
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 4.4e-51 206.5 205 53.7
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 7.5e-51 205.7 249 46.6
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 7.5e-51 205.7 261 45.2
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 1.3e-50 204.9 319 39.5
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 1.3e-50 204.9 362 37.0
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.7e-50 204.5 260 43.8
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 2.2e-50 204.1 298 40.9
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 3.7e-50 203.4 317 41.3
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 3.7e-50 203.4 316 38.9
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 4.9e-50 203.0 206 51.9
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 4.9e-50 203.0 297 42.1
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 4.9e-50 203.0 206 51.5
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 4.9e-50 203.0 233 46.4
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 6.4e-50 202.6 364 38.2
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 8.3e-50 202.2 205 50.7
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 8.3e-50 202.2 239 46.4
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 1.1e-49 201.8 248 44.0
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 1.1e-49 201.8 243 46.9
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.1e-49 201.8 326 37.4
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 1.1e-49 201.8 360 35.8
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 1.4e-49 201.4 350 38.0
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 1.9e-49 201.1 206 51.5
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 1.9e-49 201.1 230 47.0
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 1.9e-49 201.1 242 45.5
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.9e-49 201.1 263 43.3
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.9e-49 201.1 292 40.8
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.9e-49 201.1 322 39.8
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 1.9e-49 201.1 360 35.8
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 3.2e-49 200.3 345 38.8
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 3.2e-49 200.3 345 38.8
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 4.1e-49 199.9 259 42.1
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 4.1e-49 199.9 327 37.9
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 5.4e-49 199.5 249 45.4
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 5.4e-49 199.5 249 42.6
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 7.0e-49 199.1 245 45.3
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 7.0e-49 199.1 248 44.8
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 7.0e-49 199.1 308 41.6
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 9.2e-49 198.7 326 38.3
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.2e-48 198.4 349 37.5
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.2e-48 198.4 320 39.4
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.6e-48 198.0 254 42.5
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 1.6e-48 198.0 313 41.2
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.0e-48 197.6 245 46.5
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.0e-48 197.6 245 46.5
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 2.0e-48 197.6 201 50.7
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 2.7e-48 197.2 254 45.7
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 2.7e-48 197.2 318 40.6
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 3.5e-48 196.8 353 37.4
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 3.5e-48 196.8 319 38.2
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 3.5e-48 196.8 299 40.1
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 4.6e-48 196.4 422 33.6
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.6e-48 196.4 227 46.3
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 6.0e-48 196.1 247 44.9
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 6.0e-48 196.1 201 51.7
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 6.0e-48 196.1 234 45.3
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 7.8e-48 195.7 230 46.1
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 7.8e-48 195.7 230 46.1
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 7.8e-48 195.7 388 35.3
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.0e-47 195.3 313 39.3
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.3e-47 194.9 310 39.0
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 1.3e-47 194.9 200 49.5
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.7e-47 194.5 345 38.0
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.7e-47 194.5 327 37.0
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 1.7e-47 194.5 199 51.8
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 2.3e-47 194.1 243 45.3
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.0e-47 193.7 312 40.4
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 3.0e-47 193.7 263 42.6
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 3.0e-47 193.7 320 38.4
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 3.9e-47 193.4 239 44.8
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 3.9e-47 193.4 264 40.2
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 5.0e-47 193.0 245 44.1
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 5.0e-47 193.0 351 37.3
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 5.0e-47 193.0 320 38.4
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 5.0e-47 193.0 299 39.8
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 6.6e-47 192.6 222 45.9
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 6.6e-47 192.6 246 45.1
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 8.6e-47 192.2 228 46.5
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 8.6e-47 192.2 360 36.7
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 8.6e-47 192.2 345 37.1
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 8.6e-47 192.2 317 38.8
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 8.6e-47 192.2 291 38.1
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 1.1e-46 191.8 318 37.1
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.1e-46 191.8 291 38.5
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.1e-46 191.8 406 34.7
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.5e-46 191.4 231 45.0
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 2.5e-46 190.7 354 35.9
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 2.5e-46 190.7 208 49.0
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 3.3e-46 190.3 206 48.1
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 3.3e-46 190.3 238 45.8
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 4.3e-46 189.9 419 34.4
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 5.6e-46 189.5 245 43.7
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 5.6e-46 189.5 241 45.6
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 7.3e-46 189.1 266 42.5
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 9.5e-46 188.7 291 38.1
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.2e-45 188.3 245 43.3
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 2.1e-45 187.6 234 46.6
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 2.1e-45 187.6 289 37.0
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 2.1e-45 187.6 219 46.6
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 2.8e-45 187.2 356 36.5
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 3.6e-45 186.8 204 49.5
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 6.2e-45 186.0 204 47.5
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 6.2e-45 186.0 315 37.8
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 8.0e-45 185.7 206 47.6
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 8.0e-45 185.7 241 42.7
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 1.4e-44 184.9 241 42.7
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.8e-44 184.5 230 45.2
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 8.9e-44 182.2 226 44.2
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 1.2e-43 181.8 342 35.4
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 1.5e-43 181.4 345 33.9
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 2.0e-43 181.0 198 47.0
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.6e-43 180.6 408 32.1
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 3.4e-43 180.3 205 43.9
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 4.4e-43 179.9 200 49.5
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 4.4e-43 179.9 198 48.0
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 4.4e-43 179.9 200 47.5
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 5.8e-43 179.5 193 47.2
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 2.2e-42 177.6 234 43.6
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 6.4e-42 176.0 384 32.3
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 4.1e-41 173.3 204 43.6
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 4.1e-41 173.3 377 34.0
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.6e-40 171.4 198 46.5
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.3e-39 168.3 317 34.4
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 5.1e-39 166.4 267 37.8
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.1e-38 165.2 160 51.2
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.3e-38 163.3 265 39.2
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 5.6e-38 162.9 202 45.0
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.2e-37 161.8 265 38.9
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 2.8e-37 160.6 324 36.1
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 4.7e-37 159.8 186 46.2
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 4.7e-37 159.8 262 39.3
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 6.2e-37 159.5 204 45.1
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 1.1e-36 158.7 238 42.0
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 6.8e-36 156.0 275 36.4
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 1.2e-35 155.2 197 43.7
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 9.9e-35 152.1 202 42.1
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 1.3e-34 151.8 495 27.3
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 1.7e-34 151.4 191 42.4
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.7e-34 151.4 214 42.5
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 8.3e-34 149.1 202 42.6
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 2.4e-33 147.5 138 55.8
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.3e-31 141.7 322 32.9
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 3.0e-31 140.6 255 38.0
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 8.9e-28 129.0 285 35.1
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.2e-27 128.6 132 48.5
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 4.4e-27 126.7 216 36.6
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 5.8e-27 126.3 153 45.1
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 2.4e-25 120.9 139 46.8
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 2.4e-25 120.9 153 45.1
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 4.6e-24 116.7 250 33.6
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 4.6e-24 116.7 197 37.6
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.0e-23 114.0 237 35.0
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 3.9e-23 113.6 112 49.1
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 6.6e-23 112.8 155 43.9
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 2.1e-21 107.8 218 33.5
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 4.4e-19 100.1 221 30.8
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 1.3e-18 98.6 202 37.1
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.2e-17 93.6 188 35.1
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 2.3e-15 87.8 185 32.4
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 4.3e-14 83.6 99 47.5
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 2.8e-13 80.9 109 43.1
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 8.1e-13 79.3 96 50.0
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 1.5e-11 75.1 96 42.7
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 3.3e-06 57.4 86 39.5
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 4.3e-06 57.0 85 41.2


User provided reference genes

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