Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2249 Punica granatum HOM05D007575 ORTHO05D009611 3.5e-262 907.9 505 100.0
Eucgr.A00245 Eucalyptus grandis HOM05D007575 ORTHO05D009611 4.9e-115 419.1 534 51.3
Cfa015783 Carpinus fangiana HOM05D007575 ORTHO05D009611 1.9e-114 417.2 544 47.8
Gohir.D10G131800 Gossypium hirsutum HOM05D007575 ORTHO05D009611 4.1e-114 416.0 534 47.0
Gohir.A10G134800 Gossypium hirsutum HOM05D007575 ORTHO05D009611 4.6e-113 412.5 534 47.0
QL10p045159 Quercus lobata HOM05D007575 ORTHO05D009611 6.0e-113 412.1 546 47.3
Gorai.011G145500 Gossypium raimondii HOM05D007575 ORTHO05D009611 7.8e-113 411.8 534 46.4
MD04G1038600 Malus domestica HOM05D007575 ORTHO05D009611 8.6e-112 408.3 523 47.4
CiPaw.01G103900 Carya illinoinensis HOM05D007575 ORTHO05D009611 1.5e-111 407.5 548 46.0
Haze_00711 Corylus avellana HOM05D007575 ORTHO05D009611 1.2e-110 404.4 544 47.1
Thecc.04G183800 Theobroma cacao HOM05D007575 ORTHO05D009611 1.6e-110 404.1 547 50.3
Duzib151G0056 Durio zibethinus HOM05D007575 ORTHO05D009611 3.6e-110 402.9 542 46.5
CSS0031716 Camellia sinensis var. sinensis HOM05D007575 ORTHO05D009611 1.2e-108 397.9 579 44.2
TAR633G2419 Trochodendron aralioides HOM05D007575 ORTHO05D009611 4.4e-108 396.0 542 45.4
Potri.017G036600 Populus trichocarpa HOM05D007575 ORTHO05D009611 1.7e-107 394.0 540 45.9
Rhsim09G0032600 Rhododendron simsii HOM05D007575 ORTHO05D009611 4.9e-107 392.5 540 45.2
Ciclev10019508m.g Citrus clementina HOM05D007575 ORTHO05D009611 6.4e-107 392.1 583 42.5
Manes.11G115700 Manihot esculenta HOM05D007575 ORTHO05D009611 8.3e-107 391.7 546 46.3
GSVIVG01013567001 Vitis vinifera HOM05D007575 ORTHO05D009611 4.1e-106 389.4 552 45.5
Gorai.009G350900 Gossypium raimondii HOM05D007575 ORTHO05D009611 9.2e-106 388.3 549 44.6
Gohir.D05G326300 Gossypium hirsutum HOM05D007575 ORTHO05D009611 2.7e-105 386.7 549 44.6
Aa31LG1G25020 Aethionema arabicum HOM05D007575 ORTHO05D009611 3.5e-105 386.3 532 46.1
Sabra07G0100200 Salix brachista HOM05D007575 ORTHO05D009611 1.7e-104 384.0 542 44.8
Gohir.A05G326900 Gossypium hirsutum HOM05D007575 ORTHO05D009611 5.1e-104 382.5 528 46.2
ClCG08G004240 Citrullus lanatus HOM05D007575 ORTHO05D009611 4.3e-103 379.4 536 46.6
Prupe.1G189300 Prunus persica HOM05D007575 ORTHO05D009611 4.3e-103 379.4 545 44.8
Cc03_g13380 Coffea canephora HOM05D007575 ORTHO05D009611 5.6e-103 379.0 514 44.9
Actinidia39859 Actinidia chinensis HOM05D007575 ORTHO05D009611 3.6e-102 376.3 563 43.3
CsaV3_6G003720 Cucumis sativus L. HOM05D007575 ORTHO05D009611 1.1e-101 374.8 538 45.2
CANSAT78G0404 Cannabis sativa HOM05D007575 ORTHO05D009611 1.5e-100 370.9 527 43.6
MELO3C011621.2 Cucumis melo HOM05D007575 ORTHO05D009611 1.5e-100 370.9 534 44.9
Atru.chr3.1619 Acer truncatum HOM05D007575 ORTHO05D009611 7.6e-100 368.6 492 46.7
THA.LOC104803562 Tarenaya hassleriana HOM05D007575 ORTHO05D009611 2.9e-99 366.7 553 42.9
MSTRG.24588 Avicennia marina HOM05D007575 ORTHO05D009611 3.8e-99 366.3 538 43.3
FAN17G1632 Fragaria x ananassa HOM05D007575 ORTHO05D009611 3.8e-99 366.3 596 43.0
FvH4_4g11270 Fragaria vesca HOM05D007575 ORTHO05D009611 8.4e-99 365.2 596 39.9
RcHm_v2.0_Chr4g0407361 Rosa chinensis HOM05D007575 ORTHO05D009611 2.7e-97 360.1 600 42.3
FAN07G0850 Fragaria x ananassa HOM05D007575 ORTHO05D009611 3.5e-97 359.8 596 40.1
SalBow6G5467 Salvia bowleyana HOM05D007575 ORTHO05D009611 3.5e-97 359.8 521 43.4
AT2G43210 Arabidopsis thaliana HOM05D007575 ORTHO05D009611 1.0e-96 358.2 537 41.7
Carub.0004s2568 Capsella rubella HOM05D007575 ORTHO05D009611 1.7e-96 357.5 529 43.3
Sp4g25330 Schrenkiella parvula HOM05D007575 ORTHO05D009611 1.7e-96 357.5 535 42.8
ECA233G3130 Erigeron canadensis HOM05D007575 ORTHO05D009611 2.3e-96 357.1 518 44.0
Thhalv10001393m.g Eutrema salsugineum HOM05D007575 ORTHO05D009611 2.3e-96 357.1 534 43.3
HanXRQChr02g0057801 Helianthus annuus HOM05D007575 ORTHO05D009611 1.5e-95 354.4 528 43.4
CAN.G710.64 Capsicum annuum HOM05D007575 ORTHO05D009611 5.6e-95 352.4 532 41.2
AL4G41870 Arabidopsis lyrata HOM05D007575 ORTHO05D009611 7.3e-95 352.1 537 41.9
Oeu050351.1 Olea europaea HOM05D007575 ORTHO05D009611 7.3e-95 352.1 511 44.2
Sed0001943 Sechium edule HOM05D007575 ORTHO05D009611 2.1e-94 350.5 542 42.8
Migut.N00470 Erythranthe guttata HOM05D007575 ORTHO05D009611 1.8e-93 347.4 528 42.6
vmacro00586 Vaccinium macrocarpon HOM05D007575 ORTHO05D009611 7.6e-92 342.0 581 38.9
Lsat_1_v5_gn_6_54841 Lactuca sativa HOM05D007575 ORTHO05D009611 9.9e-92 341.7 504 40.7
Lj6A70T54 Lonicera japonica HOM05D007575 ORTHO05D009611 9.9e-92 341.7 642 37.5
Sabra17G0024000 Salix brachista HOM05D007575 ORTHO05D009611 2.2e-91 340.5 588 40.0
SGA_v2.0_scaffold406G51053 Striga asiatica HOM05D007575 ORTHO05D009611 1.4e-90 337.8 536 43.1
Nn1g09745 Nelumbo nucifera HOM05D007575 ORTHO05D009611 4.2e-90 336.3 575 40.2
BraA04t18714Z Brassica rapa HOM05D001811 ORTHO05D001738 2.7e-89 333.6 510 44.9
DCAR_027534 Daucus carota HOM05D007575 ORTHO05D009611 2.5e-87 327.0 522 40.0
C04p70190 Brassica napus HOM05D007575 ORTHO05D009611 4.3e-87 326.2 543 41.3
Potri.007G123800 Populus trichocarpa HOM05D007575 ORTHO05D009611 1.3e-86 324.7 479 44.9
Actinidia11312 Actinidia chinensis HOM05D007575 ORTHO05D009611 3.6e-86 323.2 531 41.2
FAN22G0659 Fragaria x ananassa HOM05D007575 ORTHO05D009611 1.4e-85 321.2 609 39.4
Sopen09g036470 Solanum pennellii HOM05D007575 ORTHO05D009611 7.6e-84 315.5 519 39.9
A04p32490 Brassica napus HOM05D007575 ORTHO05D009611 1.9e-82 310.8 581 39.1
Peaxi162Scf00286g00233 Petunia axillaris HOM05D007575 ORTHO05D009611 4.6e-81 306.2 533 40.0
HPP92_002813 Vanilla planifolia HOM05D007575 ORTHO05D009611 2.3e-80 303.9 519 37.8
unitig_8.g3630 Utricularia gibba HOM05D007575 ORTHO05D009611 5.1e-80 302.8 545 41.1
ATR0743G244 Amborella trichopoda HOM05D007575 ORTHO05D009611 8.7e-80 302.0 544 36.8
MBI08_g10298_MAGBIO Magnolia biondii HOM05D007575 ORTHO05D009611 1.1e-79 301.6 608 37.5
HPP92_002869 Vanilla planifolia HOM05D007575 ORTHO05D009611 7.6e-76 288.9 487 38.2
PSO210G6745 Papaver somniferum HOM05D007575 ORTHO05D009611 5.5e-74 282.7 558 40.9
COL.COLO4_24385 Corchorus olitorius HOM05D001792 ORTHO05D001821 1.8e-72 277.7 541 37.3
CDE09G0236 Ceratophyllum demersum HOM05D007575 ORTHO05D009611 6.7e-72 275.8 531 36.3
CARHR138270 Cardamine hirsuta HOM05D007575 ORTHO05D009611 1.6e-70 271.2 454 45.6
Lj6A61T39 Lonicera japonica HOM05D007575 ORTHO05D009611 1.1e-66 258.5 373 44.0
BcaNung07370 Brassica carinata HOM05D007575 ORTHO05D009611 7.1e-66 255.8 440 40.5
Os11g0293900 Oryza sativa ssp. japonica HOM05D007575 ORTHO05D009611 7.1e-66 255.8 546 36.8
Nitab4.5_0004962g0010 Nicotiana tabacum HOM05D007575 ORTHO05D009611 1.5e-63 248.1 466 37.1
Nitab4.5_0001049g0060 Nicotiana tabacum HOM05D007575 ORTHO05D009611 9.6e-63 245.4 470 37.2
PSO832G0541 Papaver somniferum HOM05D007575 ORTHO05D009611 2.5e-58 230.7 473 37.0
Solyc09g098550.4 Solanum lycopersicum HOM05D007575 ORTHO05D009611 7.9e-57 225.7 444 36.5
Hma1.2p1_1477F.1_g285910 Hydrangea macrophylla HOM05D007575 ORTHO05D009611 1.4e-40 171.8 249 46.2
Mapoly0164s0007 Marchantia polymorpha HOM05D007575 ORTHO05D009611 2.6e-39 167.5 425 30.8
Pp3c20_2320 Physcomitrium patens HOM05D007575 ORTHO05D009611 7.4e-39 166.0 525 28.4
SEGI_13760 Sequoiadendron giganteum HOM05D007575 ORTHO05D009611 3.6e-33 147.1 397 31.5
Eucgr.A00051 Eucalyptus grandis HOM05D007575 ORTHO05D009611 9.7e-31 139.0 168 51.8
AagrBONN_evm.TU.Sc2ySwM_344.3290 Anthoceros agrestis HOM05D007575 ORTHO05D009611 1.4e-29 135.2 427 28.3
BcaB06g29288 Brassica carinata HOM05D007575 ORTHO05D009611 1.8e-29 134.8 128 52.3
SMO116G0403 Selaginella moellendorffii HOM05D007575 ORTHO05D009611 2.4e-29 134.4 540 29.4
TAR633G1182 Trochodendron aralioides HOM05D007575 ORTHO05D009611 5.3e-29 133.3 173 47.4
SalBow5G2148 Salvia bowleyana HOM05D007575 ORTHO05D009611 5.0e-27 126.7 174 47.7
SalBow5G4021 Salvia bowleyana HOM05D007575 ORTHO05D009611 5.0e-27 126.7 174 47.7
CSS0007449 Camellia sinensis var. sinensis HOM05D007575 ORTHO05D009611 5.5e-26 123.2 340 32.9
Zm00001eb198990 Zea mays HOM05D007575 ORTHO05D009611 7.2e-26 122.9 225 37.8
Lsat_1_v5_gn_5_138981 Lactuca sativa HOM05D007575 ORTHO05D009611 3.4e-23 114.0 315 31.4
SEGI_03248 Sequoiadendron giganteum HOM05D007575 ORTHO05D009611 6.3e-22 109.8 176 42.0
PGSC0003DMG400021612 Solanum tuberosum HOM05D007575 ORTHO05D009611 8.0e-17 92.8 76 61.8
MBI08_g05086_MAGBIO Magnolia biondii HOM05D007575 ORTHO05D009611 2.5e-10 71.2 71 49.3
CBR_g123 Chara braunii HOM05D007575 ORTHO05D009611 8.9e-08 62.8 393 22.9
MCO09G577 Micromonas commoda HOM05D007575 ORTHO05D269925 8.3e-06 56.2 515 25.8


User provided reference genes

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