Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2217 Punica granatum HOM05D007485 ORTHO05D009437 2.9e-89 332.0 184 100.0
MD10G1169600 Malus domestica HOM05D007485 ORTHO05D009437 8.1e-52 207.6 185 61.6
Prupe.8G207500 Prunus persica HOM05D007485 ORTHO05D009437 9.0e-51 204.1 187 61.5
MD05G1180900 Malus domestica HOM05D007485 ORTHO05D009437 1.5e-50 203.4 185 61.1
FAN24G1628 Fragaria x ananassa HOM05D007485 ORTHO05D009437 1.4e-48 196.8 184 60.3
FvH4_2g19580 Fragaria vesca HOM05D007485 ORTHO05D009437 1.9e-48 196.4 184 59.8
Atru.chr5.1880 Acer truncatum HOM05D007485 ORTHO05D009437 2.1e-47 193.0 189 59.3
FAN27G2610 Fragaria x ananassa HOM05D007485 ORTHO05D009437 4.6e-47 191.8 184 59.2
Gohir.A07G201700 Gossypium hirsutum HOM05D007485 ORTHO05D009437 7.9e-47 191.0 185 59.5
CSS0034782 Camellia sinensis var. sinensis HOM05D007485 ORTHO05D009437 1.8e-46 189.9 184 61.4
TWI59G0176 Tripterygium wilfordii HOM05D007485 ORTHO05D009437 1.8e-46 189.9 184 59.2
Gohir.D07G208000 Gossypium hirsutum HOM05D007485 ORTHO05D009437 2.3e-46 189.5 185 58.9
RcHm_v2.0_Chr6g0285341 Rosa chinensis HOM05D007485 ORTHO05D009437 3.0e-46 189.1 184 58.2
Thecc.01G230100 Theobroma cacao HOM05D007485 ORTHO05D009437 6.7e-46 188.0 185 58.9
Haze_24766 Corylus avellana HOM05D007485 ORTHO05D009437 1.1e-45 187.2 188 58.5
Duzib133G1001 Durio zibethinus HOM05D007485 ORTHO05D009437 4.3e-45 185.3 184 58.7
CiPaw.03G152400 Carya illinoinensis HOM05D007485 ORTHO05D009437 7.4e-45 184.5 184 60.3
GSVIVG01028546001 Vitis vinifera HOM05D007485 ORTHO05D009437 6.2e-44 181.4 185 62.7
Peaxi162Scf00499g00019 Petunia axillaris HOM05D007485 ORTHO05D009437 8.1e-44 181.0 187 58.3
FAN15G2643 Fragaria x ananassa HOM05D007485 ORTHO05D009437 1.1e-43 180.6 184 58.2
Cfa002536 Carpinus fangiana HOM05D001836 ORTHO05D001519 3.1e-43 179.1 187 57.2
Gorai.001G234600 Gossypium raimondii HOM05D007485 ORTHO05D009437 9.0e-43 177.6 200 54.0
CANSAT01G1289 Cannabis sativa HOM05D007485 ORTHO05D009437 3.4e-42 175.6 182 54.4
Manes.12G043200 Manihot esculenta HOM05D007485 ORTHO05D009437 1.0e-41 174.1 186 57.0
Actinidia37576 Actinidia chinensis HOM05D007485 ORTHO05D009437 1.7e-41 173.3 166 62.0
Nn1g03123 Nelumbo nucifera HOM05D007485 ORTHO05D009437 2.2e-41 172.9 184 54.9
MSTRG.18375 Avicennia marina HOM05D007485 ORTHO05D009437 2.9e-41 172.6 185 54.1
Solyc06g007990.4 Solanum lycopersicum HOM05D007485 ORTHO05D009437 6.5e-41 171.4 184 54.3
Cc01_g17350 Coffea canephora HOM05D007485 ORTHO05D009437 8.4e-41 171.0 188 55.9
Glyma.18G175800 Glycine max HOM05D007485 ORTHO05D009437 3.2e-40 169.1 154 59.7
Sopen06g002830 Solanum pennellii HOM05D007485 ORTHO05D009437 5.5e-40 168.3 184 53.8
Migut.D00513 Erythranthe guttata HOM05D007485 ORTHO05D009437 7.1e-40 167.9 172 55.8
SGA_v2.0_scaffold1G00709 Striga asiatica HOM05D007485 ORTHO05D009437 7.1e-40 167.9 152 60.5
Glyma.08G357300 Glycine max HOM05D007485 ORTHO05D009437 9.3e-40 167.5 184 52.2
VMungo1383G3371 Vigna mungo HOM05D007485 ORTHO05D009437 9.3e-40 167.5 165 55.2
CsaV3_3G028690 Cucumis sativus L. HOM05D007485 ORTHO05D009437 1.2e-39 167.2 188 53.7
Potri.002G251800 Populus trichocarpa HOM05D007485 ORTHO05D009437 1.2e-39 167.2 172 56.4
Ciclev10022604m.g Citrus clementina HOM05D007485 ORTHO05D009437 2.7e-39 166.0 184 52.7
EL10Ac7g17803 Beta vulgaris HOM05D007485 ORTHO05D009437 3.5e-39 165.6 163 55.8
vmacro02738 Vaccinium macrocarpon HOM05D007485 ORTHO05D009437 3.5e-39 165.6 211 51.7
Lalb_Chr19g0125461 Lupinus albus HOM05D007485 ORTHO05D009437 4.6e-39 165.2 185 51.9
SalBow6G3754 Salvia bowleyana HOM05D007485 ORTHO05D009437 4.6e-39 165.2 187 54.5
Rhsim13G0042600 Rhododendron simsii HOM05D007485 ORTHO05D009437 6.0e-39 164.9 166 60.2
arahy.Tifrunner.gnm1.ann1.9XF3L6 Arachis hypogaea HOM05D007485 ORTHO05D009437 7.9e-39 164.5 184 52.7
Nitab4.5_0001740g0030 Nicotiana tabacum HOM05D007485 ORTHO05D009437 7.9e-39 164.5 195 52.3
CAN.G322.118 Capsicum annuum HOM05D007485 ORTHO05D009437 1.0e-38 164.1 186 51.6
Phvul.008G122300 Phaseolus vulgaris HOM05D007485 ORTHO05D009437 2.3e-38 162.9 163 54.6
Medtr7g059255 Medicago truncatula HOM05D007485 ORTHO05D009437 3.9e-38 162.2 165 55.8
MELO3C012792.2 Cucumis melo HOM05D007485 ORTHO05D009437 1.9e-37 159.8 188 55.3
Eucgr.C02436 Eucalyptus grandis HOM05D007485 ORTHO05D009437 4.3e-37 158.7 198 54.5
Carub.0007s2945 Capsella rubella HOM05D007485 ORTHO05D009437 7.4e-37 157.9 185 53.5
Lsat_1_v5_gn_9_12821 Lactuca sativa HOM05D007485 ORTHO05D009437 7.4e-37 157.9 193 53.4
Thhalv10026377m.g Eutrema salsugineum HOM05D007485 ORTHO05D009437 1.6e-36 156.8 186 53.2
AL9U10750 Arabidopsis lyrata HOM05D007485 ORTHO05D009437 2.1e-36 156.4 162 56.8
AT4G13220 Arabidopsis thaliana HOM05D007485 ORTHO05D009437 3.7e-36 155.6 187 53.5
Sc05g0002340 Simmondsia chinensis HOM05D007485 ORTHO05D009437 4.8e-36 155.2 154 56.5
arahy.Tifrunner.gnm1.ann1.W4TMFE Arachis hypogaea HOM05D007485 ORTHO05D009437 1.4e-35 153.7 215 46.0
AUR62031821 Chenopodium quinoa HOM05D007485 ORTHO05D009437 1.8e-35 153.3 189 48.1
AUR62008887 Chenopodium quinoa HOM05D007485 ORTHO05D009437 3.1e-35 152.5 163 52.8
THA.LOC104808772 Tarenaya hassleriana HOM05D007485 ORTHO05D009437 9.0e-35 151.0 186 51.6
Lj1g0002217 Lotus japonicus HOM05D007485 ORTHO05D009437 1.2e-34 150.6 184 47.3
CARHR126310 Cardamine hirsuta HOM05D007485 ORTHO05D009437 1.5e-34 150.2 162 54.9
HPP92_025808 Vanilla planifolia HOM05D007485 ORTHO05D009437 1.5e-34 150.2 154 58.4
CARHR218700 Cardamine hirsuta HOM05D007485 ORTHO05D009437 2.6e-34 149.4 185 48.1
Sp7g10710 Schrenkiella parvula HOM05D007485 ORTHO05D009437 3.4e-34 149.1 186 51.1
A08p33350 Brassica napus HOM05D007485 ORTHO05D009437 4.5e-34 148.7 190 51.1
Aa31LG9G4570 Aethionema arabicum HOM05D007485 ORTHO05D009437 1.3e-33 147.1 156 55.1
Aqoxy2G03844 Aquilegia oxysepala HOM05D007485 ORTHO05D009437 2.9e-33 146.0 121 71.9
MBI10_g09190_MAGBIO Magnolia biondii HOM05D007485 ORTHO05D009437 3.8e-33 145.6 185 55.1
BraA08t35252Z Brassica rapa HOM05D007485 ORTHO05D009437 6.5e-33 144.8 151 56.3
BcaB03g13243 Brassica carinata HOM05D007485 ORTHO05D009437 1.4e-32 143.7 169 52.7
PSO017G5507 Papaver somniferum HOM05D007485 ORTHO05D009437 1.4e-32 143.7 155 59.4
ECA247G1773 Erigeron canadensis HOM05D007485 ORTHO05D009437 2.5e-32 142.9 122 69.7
HanXRQChr15g0468381 Helianthus annuus HOM05D007485 ORTHO05D009437 3.2e-32 142.5 166 56.6
BcaC07g38678 Brassica carinata HOM05D007485 ORTHO05D009437 9.3e-32 141.0 189 49.2
BolC8t49113H Brassica oleracea HOM05D007485 ORTHO05D009437 9.3e-32 141.0 189 49.2
C08p14780 Brassica napus HOM05D007485 ORTHO05D009437 2.1e-31 139.8 191 48.7
PGSC0003DMG400014703 Solanum tuberosum HOM05D007485 ORTHO05D009437 2.7e-31 139.4 106 67.0
Sed0027911 Sechium edule HOM05D007485 ORTHO05D009437 1.3e-30 137.1 239 45.6
QL09p044412 Quercus lobata HOM05D007485 ORTHO05D009437 1.8e-30 136.7 136 58.8
PSO063G7151 Papaver somniferum HOM05D007485 ORTHO05D009437 8.7e-30 134.4 153 59.5
COL.COLO4_36853 Corchorus olitorius HOM05D007485 ORTHO05D009437 2.5e-29 132.9 136 58.8
CDE12G0678 Ceratophyllum demersum HOM05D007485 ORTHO05D009437 9.7e-29 131.0 143 55.9
Os12g0276100 Oryza sativa ssp. japonica HOM05D007485 ORTHO05D009437 1.6e-28 130.2 127 55.9
TPR.G9157 Trifolium pratense HOM05D007485 ORTHO05D009437 1.4e-27 127.1 106 61.3
unitig_0.g180 Utricularia gibba HOM05D007485 ORTHO05D009437 2.2e-25 119.8 123 53.7
Zm00001eb102490 Zea mays HOM05D007485 ORTHO05D009437 1.0e-22 110.9 131 48.9
Zm00001eb317800 Zea mays HOM05D007485 ORTHO05D009437 1.1e-21 107.5 124 50.8
Psat0s3317g0040 Pisum sativum HOM05D007485 ORTHO05D009437 6.9e-19 98.2 131 48.9
QL09p045086 Quercus lobata HOM05D007485 ORTHO05D009437 6.9e-19 98.2 56 87.5
Hund18369 Selenicereus undatus HOM05D007485 ORTHO05D009437 1.5e-18 97.1 130 48.5
ATR0088G060 Amborella trichopoda HOM05D007485 ORTHO05D009437 5.5e-16 88.6 58 75.9
Pp3c25_600 Physcomitrium patens HOM05D007485 ORTHO05D009437 2.7e-15 86.3 124 46.0
HanXRQChr12g0377041 Helianthus annuus HOM05D007485 ORTHO05D009437 1.8e-11 73.6 55 67.3
ClCG07G001710 Citrullus lanatus HOM05D007485 ORTHO05D009437 1.7e-09 67.0 91 46.2
THA.LOC104804650 Tarenaya hassleriana HOM05D007485 ORTHO05D009437 1.5e-08 63.9 77 46.8
CBR_g11056 Chara braunii HOM05D007485 ORTHO05D009437 3.2e-08 62.8 130 40.0
Mapoly0101s0026 Marchantia polymorpha HOM05D007485 ORTHO05D009437 1.6e-07 60.5 56 53.6
Nitab4.5_0003180g0040 Nicotiana tabacum HOM05D007485 ORTHO05D009437 4.7e-07 58.9 144 36.8
Ca_22684_v3 Cicer arietinum L. HOM05D007485 ORTHO05D009437 8.8e-06 54.7 53 60.4


User provided reference genes

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