Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 3.9e-254 880.9 437 100.0
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 3.3e-160 568.9 436 65.6
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.9e-155 553.1 392 69.4
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 5.4e-155 551.6 399 67.4
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 5.4e-155 551.6 441 63.7
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 1.2e-154 550.4 425 64.9
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 3.5e-154 548.9 402 68.2
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 1.3e-153 547.0 400 68.0
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 5.1e-153 545.0 433 63.7
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 2.5e-152 542.7 359 71.9
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 9.6e-152 540.8 423 64.8
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 8.1e-151 537.7 429 64.6
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 1.1e-150 537.3 392 66.3
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 1.1e-150 537.3 390 68.2
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 3.1e-150 535.8 404 66.3
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 3.1e-150 535.8 442 62.7
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 9.0e-150 534.3 425 64.0
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 3.4e-149 532.3 402 65.2
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 5.8e-149 531.6 432 63.9
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.0e-148 530.8 429 62.7
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 1.0e-148 530.8 414 64.5
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 4.9e-148 528.5 409 66.3
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 4.9e-148 528.5 414 64.3
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 4.9e-148 528.5 401 64.6
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 4.9e-148 528.5 366 69.7
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 6.4e-148 528.1 375 67.5
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 1.4e-147 526.9 375 67.7
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 3.2e-147 525.8 364 69.5
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 1.2e-146 523.9 378 67.5
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 1.2e-146 523.9 365 69.9
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 2.1e-146 523.1 375 66.7
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 2.7e-146 522.7 433 62.6
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 4.6e-146 521.9 430 61.9
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 1.8e-145 520.0 403 63.8
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 5.1e-145 518.5 428 61.7
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 1.1e-144 517.3 380 67.4
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 1.5e-144 516.9 431 60.6
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 1.9e-144 516.5 434 62.2
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 4.3e-144 515.4 399 64.4
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 4.3e-144 515.4 403 63.0
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 4.3e-144 515.4 410 62.4
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 1.3e-143 513.8 408 60.5
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.6e-143 513.5 427 60.0
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.6e-143 513.5 415 62.7
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 6.2e-143 511.5 407 62.9
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 1.8e-142 510.0 362 66.0
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 4.0e-142 508.8 394 64.7
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 1.2e-141 507.3 341 70.4
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 2.6e-141 506.1 398 64.1
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 4.5e-141 505.4 453 57.4
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 4.5e-141 505.4 453 57.4
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 5.8e-141 505.0 409 61.1
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 1.3e-140 503.8 404 63.6
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 1.3e-140 503.8 408 62.0
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 2.9e-140 502.7 408 61.8
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 8.4e-140 501.1 408 62.0
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 3.2e-139 499.2 431 59.9
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 3.2e-139 499.2 384 65.1
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 7.1e-139 498.0 382 63.1
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 7.1e-139 498.0 395 62.5
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 7.1e-139 498.0 382 64.9
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 1.2e-138 497.3 356 66.3
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 4.6e-138 495.4 395 61.5
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 6.1e-138 495.0 340 68.8
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 7.9e-138 494.6 424 59.0
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 7.9e-138 494.6 451 56.8
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 2.3e-137 493.0 424 59.2
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 8.7e-137 491.1 397 59.4
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 1.5e-136 490.3 395 62.3
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 1.9e-136 490.0 356 66.6
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 2.5e-136 489.6 374 65.0
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 3.3e-136 489.2 374 65.0
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 3.3e-136 489.2 372 62.1
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 9.7e-136 487.6 422 59.0
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 1.3e-135 487.3 346 67.6
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 2.2e-135 486.5 424 57.3
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 1.1e-134 484.2 341 68.0
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 1.4e-134 483.8 362 65.2
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 2.0e-133 479.9 433 58.0
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 3.4e-133 479.2 409 58.7
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 3.4e-133 479.2 406 61.8
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 1.0e-132 477.6 416 59.1
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 1.0e-132 477.6 433 57.5
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 2.9e-132 476.1 404 58.9
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 5.0e-132 475.3 357 62.2
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 1.1e-131 474.2 404 58.9
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 1.1e-131 474.2 399 59.1
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 1.4e-131 473.8 371 62.0
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 3.2e-131 472.6 371 61.2
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 1.6e-130 470.3 371 61.5
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 2.7e-130 469.5 402 58.7
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 4.6e-130 468.8 442 55.0
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 6.1e-130 468.4 402 59.5
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 7.9e-130 468.0 376 60.4
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 1.8e-129 466.8 400 59.2
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 3.0e-129 466.1 322 68.3
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 5.1e-129 465.3 372 61.0
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 6.7e-129 464.9 400 58.8
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 6.7e-129 464.9 418 56.7
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 9.7e-128 461.1 363 62.5
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 2.2e-127 459.9 430 54.9
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 8.2e-127 458.0 375 59.7
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 1.4e-126 457.2 430 54.9
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 4.1e-126 455.7 413 58.6
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 1.2e-125 454.1 371 59.8
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 1.2e-125 454.1 371 59.8
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 3.8e-124 449.1 457 51.4
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 6.5e-124 448.4 375 57.9
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 5.5e-123 445.3 441 53.3
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 2.0e-120 436.8 459 52.9
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 3.3e-120 436.0 355 61.4
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 7.4e-120 434.9 359 57.1
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 8.2e-119 431.4 400 56.2
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 1.2e-117 427.6 333 64.0
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 5.9e-117 425.2 415 53.3
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 1.5e-115 420.6 452 52.0
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 1.9e-115 420.2 361 58.7
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 2.1e-114 416.8 310 65.2
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 6.7e-113 411.8 292 67.1
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 2.0e-112 410.2 431 50.1
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 7.7e-109 398.3 345 57.7
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 9.4e-107 391.3 296 65.5
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 1.4e-105 387.5 323 57.3
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 6.3e-103 378.6 441 48.3
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 7.0e-102 375.2 293 60.4
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 2.0e-101 373.6 291 63.2
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 6.1e-98 362.1 408 50.2
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 3.1e-94 349.7 436 44.7
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 5.7e-88 328.9 372 47.6
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 1.8e-86 323.9 430 43.5
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 5.4e-86 322.4 296 58.4
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.7e-85 320.1 305 54.1
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.7e-76 290.8 435 44.6
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 8.1e-74 282.0 344 47.1
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 7.3e-67 258.8 263 52.9
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 2.0e-64 250.8 307 45.6
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 1.6e-61 241.1 325 43.7
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 4.0e-57 226.5 229 51.5
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 2.6e-56 223.8 373 40.5
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 2.6e-56 223.8 373 40.5
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 6.6e-52 209.1 192 59.4
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 1.5e-51 208.0 127 72.4
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 2.1e-50 204.1 426 36.2
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.3e-44 184.9 233 44.2
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 2.4e-41 174.1 367 35.1
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 7.4e-35 152.5 120 58.3
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 1.1e-30 138.7 390 25.9
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 5.1e-28 129.8 377 29.4
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 4.5e-24 116.7 105 56.2
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 2.3e-20 104.4 270 27.0
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 7.4e-19 99.4 124 44.4
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 1.3e-18 98.6 71 66.2
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.7e-15 88.2 53 73.6
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 2.9e-15 87.4 87 54.0
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 2.9e-15 87.4 87 54.0
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 8.8e-12 75.9 72 51.4
COL.COLO4_36170 Corchorus olitorius HOM05D021494 ORTHO05D022415 7.2e-06 56.2 42 69.0


User provided reference genes

Program Settings