Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 9.8e-264 912.9 459 100.0
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 4.7e-173 611.7 451 69.2
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 5.7e-171 604.7 453 68.2
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 1.7e-170 603.2 459 66.4
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 4.8e-170 601.7 453 68.9
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 8.2e-170 600.9 459 66.4
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 9.1e-169 597.4 459 66.0
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 7.7e-168 594.3 456 67.8
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 2.2e-167 592.8 452 67.0
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 2.9e-167 592.4 454 66.7
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 1.1e-166 590.5 461 67.5
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 5.5e-166 588.2 444 66.9
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 7.2e-166 587.8 451 66.3
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 2.1e-165 586.3 455 65.7
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 2.1e-165 586.3 457 67.0
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 3.6e-165 585.5 481 64.9
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 4.7e-165 585.1 454 65.6
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 8.0e-165 584.3 450 66.4
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 1.8e-164 583.2 453 65.3
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 2.3e-164 582.8 469 65.7
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 3.0e-164 582.4 460 64.6
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 5.2e-164 581.6 449 66.1
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 4.4e-163 578.6 495 62.0
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 1.3e-162 577.0 454 66.1
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 1.7e-162 576.6 457 65.9
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 2.4e-161 572.8 453 65.3
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 4.1e-161 572.0 441 66.2
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 7.0e-161 571.2 454 65.4
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 1.0e-159 567.4 455 65.3
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 1.0e-159 567.4 494 60.7
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 1.3e-159 567.0 442 67.9
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 8.5e-159 564.3 451 65.2
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 8.5e-159 564.3 454 65.6
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 1.1e-158 563.9 452 65.9
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 1.9e-158 563.1 455 64.8
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 2.5e-158 562.8 457 63.5
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 4.2e-158 562.0 459 64.5
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 9.4e-158 560.8 454 63.9
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 1.2e-157 560.5 461 64.6
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 4.7e-157 558.5 450 65.6
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 8.0e-157 557.8 472 64.4
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 1.0e-156 557.4 470 64.0
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 1.8e-156 556.6 435 66.7
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 5.2e-156 555.1 451 65.4
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 5.2e-156 555.1 452 63.1
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 8.8e-156 554.3 509 58.7
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 1.5e-155 553.5 451 63.6
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 5.7e-155 551.6 444 64.4
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 4.8e-154 548.5 456 63.6
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 6.3e-154 548.1 456 64.7
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 1.1e-153 547.4 450 65.1
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 1.1e-153 547.4 453 64.5
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 1.8e-153 546.6 447 63.5
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 3.1e-153 545.8 473 62.6
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 5.4e-153 545.0 446 63.9
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 9.1e-153 544.3 443 64.3
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 1.6e-152 543.5 450 64.7
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 1.6e-152 543.5 442 63.6
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 2.0e-152 543.1 453 62.9
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 2.0e-152 543.1 446 63.5
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 5.9e-152 541.6 457 63.9
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 1.9e-150 536.6 437 63.6
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 4.2e-150 535.4 492 57.7
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 1.2e-149 533.9 451 64.1
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 1.2e-149 533.9 445 62.2
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 2.1e-149 533.1 435 65.7
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 2.8e-149 532.7 449 63.5
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 3.6e-149 532.3 468 60.0
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 3.6e-149 532.3 473 59.8
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 8.0e-149 531.2 450 62.7
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 4.0e-148 528.9 454 61.2
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 6.8e-148 528.1 450 62.4
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 8.8e-148 527.7 446 62.8
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 2.0e-147 526.6 436 64.7
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 5.7e-147 525.0 443 62.1
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 9.8e-147 524.2 437 63.6
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 2.4e-145 519.6 448 61.2
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 9.2e-145 517.7 446 61.7
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 3.5e-144 515.8 437 62.9
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 7.8e-144 514.6 445 61.8
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 7.8e-144 514.6 445 61.8
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 1.0e-143 514.2 454 60.6
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 1.7e-143 513.5 472 58.3
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 3.8e-143 512.3 446 59.9
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 4.7e-141 505.4 451 61.4
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 6.8e-140 501.5 429 62.7
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 8.9e-140 501.1 437 60.4
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 1.5e-139 500.4 518 52.5
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 2.6e-139 499.6 437 60.4
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 1.7e-138 496.9 437 60.4
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 2.2e-138 496.5 394 64.7
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 2.9e-138 496.1 453 58.5
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 4.9e-138 495.4 427 58.5
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 1.4e-137 493.8 445 58.0
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 1.0e-135 487.6 437 59.3
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.3e-135 487.3 447 60.0
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 4.3e-134 482.3 449 58.1
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 1.2e-133 480.7 440 59.5
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 4.9e-130 468.8 451 55.7
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 1.4e-129 467.2 472 54.0
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 1.4e-129 467.2 474 54.6
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 7.0e-129 464.9 443 56.7
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 1.2e-128 464.2 463 54.0
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 1.6e-128 463.8 350 68.0
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 1.6e-125 453.8 469 54.6
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 4.6e-112 409.1 378 58.5
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 1.9e-105 387.1 449 49.4
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 1.3e-103 380.9 444 48.9
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 4.8e-101 372.5 305 64.9
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 4.0e-100 369.4 369 56.1
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 5.8e-99 365.5 497 42.1
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 5.8e-99 365.5 277 65.7
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 2.5e-94 350.1 363 55.4
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 4.8e-93 345.9 523 40.7
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 4.5e-91 339.3 270 62.6
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 7.1e-89 332.0 477 40.9
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 8.2e-77 292.0 611 32.6
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 3.9e-71 273.1 514 37.0
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 9.7e-62 241.9 479 35.5
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 1.8e-60 237.7 454 33.3
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 3.3e-54 216.9 492 32.1
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.3e-45 188.3 251 46.6
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 7.7e-43 179.1 154 59.7
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 2.1e-40 171.0 250 44.8
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 2.8e-32 144.1 209 39.7
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 1.3e-29 135.2 118 62.7
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 1.5e-25 121.7 208 42.8
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 3.3e-25 120.6 206 42.2
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 1.1e-20 105.5 164 44.5
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 1.2e-19 102.1 90 56.7
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 2.1e-16 91.3 75 56.0
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 8.9e-15 85.9 236 31.8
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 1.1e-12 79.0 109 45.9
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 1.4e-12 78.6 124 41.1
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 1.6e-11 75.1 111 45.0
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 2.1e-11 74.7 94 45.7
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 2.1e-11 74.7 78 50.0
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 6.6e-10 69.7 111 40.5
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 7.3e-09 66.2 59 61.0
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 6.2e-08 63.2 41 70.7
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 4.0e-07 60.5 92 44.6
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 5.2e-07 60.1 142 31.7
Cfa025566 Carpinus fangiana HOM05D004999 ORTHO05D122478 8.9e-07 59.3 445 22.0
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 1.2e-06 58.9 92 43.5
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 1.5e-06 58.5 57 54.4


User provided reference genes

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