Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2019 Punica granatum HOM05D007448 ORTHO05D009392 1.0e-51 206.5 105 100.0
Eucgr.F01082 Eucalyptus grandis HOM05D007448 ORTHO05D009392 1.7e-22 109.4 81 71.6
Nn1g03921 Nelumbo nucifera HOM05D007448 ORTHO05D009392 1.7e-22 109.4 92 66.3
Hma1.2p1_1003F.1_g246780 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 2.2e-22 109.0 94 60.6
Hma1.2p1_1488F.1_g286625 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 2.2e-22 109.0 94 60.6
Gohir.A13G143800 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.9e-21 105.9 85 67.1
Gohir.D13G148600 Gossypium hirsutum HOM05D007448 ORTHO05D009392 5.5e-21 104.4 85 65.9
GSVIVG01014426001 Vitis vinifera HOM05D007448 ORTHO05D009392 7.2e-21 104.0 94 61.7
Cpa.g.sc80.111 Carica papaya HOM05D007448 ORTHO05D009392 1.2e-20 103.2 79 73.4
Cfa020508 Carpinus fangiana HOM05D007448 ORTHO05D009392 1.2e-20 103.2 80 70.0
Thecc.07G071800 Theobroma cacao HOM05D007448 ORTHO05D009392 1.6e-20 102.8 85 65.9
Gorai.013G166400 Gossypium raimondii HOM05D007448 ORTHO05D009392 8.0e-20 100.5 67 76.1
CiPaw.11G176100 Carya illinoinensis HOM05D007448 ORTHO05D009392 2.3e-19 99.0 78 69.2
Duzib213G0053 Durio zibethinus HOM05D007448 ORTHO05D009392 3.0e-19 98.6 65 80.0
Ciclev10010083m.g Citrus clementina HOM05D007448 ORTHO05D009392 4.0e-19 98.2 70 74.3
Sabra16G0269700 Salix brachista HOM05D007448 ORTHO05D009392 4.0e-19 98.2 76 67.1
Atru.chr4.846 Acer truncatum HOM05D007448 ORTHO05D009392 6.8e-19 97.4 78 66.7
Ciclev10010683m.g Citrus clementina HOM05D007448 ORTHO05D009392 8.8e-19 97.1 70 72.9
MD03G1219500 Malus domestica HOM05D007448 ORTHO05D009392 8.8e-19 97.1 67 71.6
Potri.001G406200 Populus trichocarpa HOM05D007448 ORTHO05D009392 1.2e-18 96.7 77 67.5
Rhsim04G0017500 Rhododendron simsii HOM05D007448 ORTHO05D009392 1.2e-18 96.7 59 86.4
TPR.G23252 Trifolium pratense HOM05D007448 ORTHO05D009392 1.5e-18 96.3 92 58.7
TWI39G0054 Tripterygium wilfordii HOM05D007448 ORTHO05D009392 2.0e-18 95.9 81 63.0
Prupe.4G189600 Prunus persica HOM05D007448 ORTHO05D009392 2.6e-18 95.5 86 62.8
ClCG11G018440 Citrullus lanatus HOM05D007448 ORTHO05D009392 5.7e-18 94.4 78 65.4
Manes.03G111700 Manihot esculenta HOM05D007448 ORTHO05D009392 5.7e-18 94.4 70 71.4
vmacro09556 Vaccinium macrocarpon HOM05D007448 ORTHO05D009392 1.3e-17 93.2 59 83.1
FvH4_3g20900 Fragaria vesca HOM05D007448 ORTHO05D009392 2.2e-17 92.4 66 72.7
FAN25G3793 Fragaria x ananassa HOM05D007448 ORTHO05D009392 2.2e-17 92.4 66 72.7
HanXRQChr08g0234641 Helianthus annuus HOM05D007448 ORTHO05D009392 2.8e-17 92.0 65 70.8
Oeu019361.1 Olea europaea HOM05D007448 ORTHO05D009392 2.8e-17 92.0 63 74.6
RcHm_v2.0_Chr5g0035321 Rosa chinensis HOM05D007448 ORTHO05D009392 2.8e-17 92.0 67 71.6
Sed0026843 Sechium edule HOM05D007448 ORTHO05D009392 2.8e-17 92.0 78 62.8
arahy.Tifrunner.gnm1.ann1.UX5IA9 Arachis hypogaea HOM05D007448 ORTHO05D009392 3.7e-17 91.7 84 59.5
Glyma.06G253900 Glycine max HOM05D007448 ORTHO05D009392 4.8e-17 91.3 65 72.3
ECA246G0067 Erigeron canadensis HOM05D007448 ORTHO05D009392 6.3e-17 90.9 98 52.0
Phvul.011G154800 Phaseolus vulgaris HOM05D007448 ORTHO05D009392 6.3e-17 90.9 65 72.3
Cc06_g05250 Coffea canephora HOM05D007448 ORTHO05D009392 8.3e-17 90.5 66 71.2
FAN21G3287 Fragaria x ananassa HOM05D007448 ORTHO05D009392 8.3e-17 90.5 66 71.2
CsaV3_3G044380 Cucumis sativus L. HOM05D007448 ORTHO05D009392 1.1e-16 90.1 78 60.3
Lsat_1_v5_gn_5_6900 Lactuca sativa HOM05D007448 ORTHO05D009392 1.1e-16 90.1 85 58.8
arahy.Tifrunner.gnm1.ann1.GZ4R1Y Arachis hypogaea HOM05D007448 ORTHO05D009392 1.4e-16 89.7 84 57.1
DCAR_021403 Daucus carota HOM05D007448 ORTHO05D009392 1.4e-16 89.7 84 57.1
AUR62015605 Chenopodium quinoa HOM05D007448 ORTHO05D009392 2.4e-16 89.0 68 64.7
A07p06520 Brassica napus HOM05D007448 ORTHO05D009392 5.4e-16 87.8 69 59.4
BraA07t28447Z Brassica rapa HOM05D007448 ORTHO05D009392 5.4e-16 87.8 69 59.4
Nitab4.5_0000639g0040 Nicotiana tabacum HOM05D007448 ORTHO05D009392 5.4e-16 87.8 64 70.3
Solyc12g013500.2 Solanum lycopersicum HOM05D007448 ORTHO05D009392 5.4e-16 87.8 70 67.1
Thhalv10021866m.g Eutrema salsugineum HOM05D007448 ORTHO05D009392 9.1e-16 87.0 69 58.0
Sc03g0009610 Simmondsia chinensis HOM05D007448 ORTHO05D009392 9.1e-16 87.0 65 69.2
AL3G25660 Arabidopsis lyrata HOM05D007448 ORTHO05D009392 1.2e-15 86.7 69 60.9
Sopen12g006840 Solanum pennellii HOM05D007448 ORTHO05D009392 1.2e-15 86.7 70 65.7
PGSC0003DMG400008573 Solanum tuberosum HOM05D007448 ORTHO05D009392 1.2e-15 86.7 70 65.7
Carub.0003s1319 Capsella rubella HOM05D007448 ORTHO05D009392 1.6e-15 86.3 69 60.9
Gohir.A11G075500 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.6e-15 86.3 85 60.0
Medtr7g057740 Medicago truncatula HOM05D007448 ORTHO05D009392 2.0e-15 85.9 85 52.9
Sp3g23710 Schrenkiella parvula HOM05D007448 ORTHO05D009392 2.0e-15 85.9 69 58.0
BcaB06g26831 Brassica carinata HOM05D007448 ORTHO05D009392 2.7e-15 85.5 69 56.5
Migut.M00875 Erythranthe guttata HOM05D007448 ORTHO05D009392 2.7e-15 85.5 69 63.8
Psat3g145520 Pisum sativum HOM05D007448 ORTHO05D009392 2.7e-15 85.5 81 59.3
THA.LOC104822630 Tarenaya hassleriana HOM05D007448 ORTHO05D009392 2.7e-15 85.5 69 59.4
BcaC06g35910 Brassica carinata HOM05D007448 ORTHO05D009392 3.5e-15 85.1 69 58.0
BolC7t41418H Brassica oleracea HOM05D007448 ORTHO05D009392 3.5e-15 85.1 69 58.0
MELO3C018199.2 Cucumis melo HOM05D003028 ORTHO05D003465 3.5e-15 85.1 61 70.5
Actinidia18748 Actinidia chinensis HOM05D007448 ORTHO05D009392 4.5e-15 84.7 55 76.4
Gorai.007G085800 Gossypium raimondii HOM05D007448 ORTHO05D009392 4.5e-15 84.7 67 64.2
PSO421G0428 Papaver somniferum HOM05D007448 ORTHO05D009392 4.5e-15 84.7 58 77.6
AT3G13677 Arabidopsis thaliana HOM05D007448 ORTHO05D009392 5.9e-15 84.3 69 59.4
CDE02G3786 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 5.9e-15 84.3 66 63.6
Nitab4.5_0008360g0010 Nicotiana tabacum HOM05D007448 ORTHO05D009392 7.7e-15 84.0 64 68.8
Lj3g0013278 Lotus japonicus HOM05D007448 ORTHO05D009392 1.3e-14 83.2 60 73.3
Peaxi162Scf00000g00504 Petunia axillaris HOM05D007448 ORTHO05D009392 1.3e-14 83.2 86 53.5
CANSAT11G1525 Cannabis sativa HOM05D007448 ORTHO05D009392 2.9e-14 82.0 60 70.0
unitig_899.g15312 Utricularia gibba HOM05D007448 ORTHO05D009392 3.8e-14 81.6 67 62.7
Aa31LG8G850 Aethionema arabicum HOM05D007448 ORTHO05D009392 6.5e-14 80.9 69 56.5
Aqoxy4G01379 Aquilegia oxysepala HOM05D007448 ORTHO05D009392 2.5e-13 79.0 68 66.2
MSTRG.14378 Avicennia marina HOM05D007448 ORTHO05D009392 4.2e-13 78.2 78 51.3
QL08p018291 Quercus lobata HOM05D007448 ORTHO05D009392 4.2e-13 78.2 55 70.9
Ah.06g183620 Amaranthus hybridus HOM05D007448 ORTHO05D009392 7.2e-13 77.4 67 59.7
CDE05G1526 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 7.2e-13 77.4 66 59.1
CSS0027029 Camellia sinensis var. sinensis HOM05D007448 ORTHO05D009392 1.2e-12 76.6 49 75.5
TAR626G0388 Trochodendron aralioides HOM05D007448 ORTHO05D009392 1.2e-12 76.6 67 61.2
Os03g0581650 Oryza sativa ssp. japonica HOM05D007448 ORTHO05D009392 1.6e-12 76.3 62 64.5
EL10Ac4g09050 Beta vulgaris HOM05D007448 ORTHO05D009392 3.6e-12 75.1 66 59.1
Zm00001eb049080 Zea mays HOM05D007448 ORTHO05D009392 6.1e-12 74.3 59 64.4
Oeu006763.2 Olea europaea HOM05D007448 ORTHO05D009392 3.0e-11 72.0 47 74.5
SalBow8G2366 Salvia bowleyana HOM05D007448 ORTHO05D009392 4.0e-11 71.6 50 66.0
Lalb_Chr03g0030401 Lupinus albus HOM05D007448 ORTHO05D009392 5.2e-11 71.2 82 52.4
Hund02207 Selenicereus undatus HOM05D007448 ORTHO05D009392 7.5e-10 67.4 54 59.3
AUR62035371 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.3e-09 66.6 58 55.2
AUR62035373 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.3e-09 66.6 58 55.2
FAN11G2341 Fragaria x ananassa HOM05D007448 ORTHO05D009392 1.7e-09 66.2 47 68.1
Glyma.12G147500 Glycine max HOM05D007448 ORTHO05D009392 2.8e-09 65.5 49 63.3
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 4.9e-09 64.7 58 46.6
AUR62029317 Chenopodium quinoa HOM05D007448 ORTHO05D009392 8.3e-09 63.9 49 61.2
CAN.G1320.10 Capsicum annuum HOM05D007448 ORTHO05D009392 4.1e-08 61.6 52 61.5
Pp3c7_12690 Physcomitrium patens HOM05D007448 ORTHO05D009392 5.9e-07 57.8 61 54.1
Haze_09525 Corylus avellana HOM05D008666 ORTHO05D009871 7.7e-07 57.4 49 61.2
Pp3c3_18440 Physcomitrium patens HOM05D007448 ORTHO05D009392 2.3e-06 55.8 59 52.5
Mapoly0162s0010 Marchantia polymorpha HOM05D007448 ORTHO05D009392 3.8e-06 55.1 69 49.3
Atru.chr2.2826 Acer truncatum HOM05D007448 ORTHO05D009392 6.6e-06 54.3 41 73.2


User provided reference genes

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