Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 4.7e-126 454.5 227 100.0
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 1.7e-88 329.7 228 72.8
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 2.8e-86 322.4 193 81.3
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 8.1e-86 320.9 191 81.2
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 1.1e-85 320.5 199 78.4
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 4.5e-84 315.1 205 73.2
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 4.5e-84 315.1 199 76.9
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 5.8e-84 314.7 208 74.0
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 2.9e-83 312.4 214 71.0
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 2.9e-83 312.4 192 78.6
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 6.4e-83 311.2 208 75.0
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 6.4e-83 311.2 192 78.1
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 8.4e-83 310.8 191 77.0
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 1.9e-82 309.7 205 73.2
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 4.2e-82 308.5 218 69.3
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 5.4e-82 308.1 215 73.0
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 9.3e-82 307.4 221 68.3
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 1.2e-81 307.0 209 75.1
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 1.2e-81 307.0 207 71.0
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.6e-81 306.6 218 68.8
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 6.0e-81 304.7 218 68.3
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 2.3e-80 302.8 209 70.8
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 2.3e-80 302.8 213 71.4
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 3.0e-80 302.4 192 76.0
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 3.9e-80 302.0 212 71.2
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 1.5e-79 300.1 206 73.3
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 1.5e-79 300.1 194 74.7
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 1.5e-79 300.1 204 72.5
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 4.3e-79 298.5 217 67.7
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 2.1e-78 296.2 200 74.0
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 4.8e-78 295.0 192 74.5
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 4.8e-78 295.0 196 75.0
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 3.1e-77 292.4 211 69.2
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 3.1e-77 292.4 176 81.2
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 5.3e-77 291.6 206 70.4
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 6.9e-77 291.2 186 76.9
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.2e-76 290.4 207 71.0
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 2.0e-76 289.7 212 68.9
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 5.8e-76 288.1 177 79.7
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 7.6e-76 287.7 207 70.0
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 7.6e-76 287.7 212 67.9
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 1.0e-75 287.3 200 71.5
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 1.0e-75 287.3 204 69.6
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 1.0e-75 287.3 213 69.5
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 1.3e-75 287.0 197 69.5
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 2.9e-75 285.8 215 67.9
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 2.9e-75 285.8 201 68.7
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 2.9e-75 285.8 189 73.5
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 4.9e-75 285.0 195 71.3
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 6.5e-75 284.6 206 69.4
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 6.5e-75 284.6 202 69.8
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 8.4e-75 284.3 197 69.5
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 8.4e-75 284.3 217 68.2
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 1.1e-74 283.9 211 66.8
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 3.2e-74 282.3 207 66.2
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 4.2e-74 282.0 197 68.0
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 5.5e-74 281.6 196 70.9
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 2.1e-73 279.6 203 67.5
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 2.7e-73 279.3 216 67.1
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 3.5e-73 278.9 186 71.5
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 7.9e-73 277.7 213 67.6
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 1.0e-72 277.3 194 69.1
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 1.3e-72 276.9 195 69.2
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 1.3e-72 276.9 212 64.6
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 3.0e-72 275.8 197 69.0
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 3.0e-72 275.8 201 66.7
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 3.0e-72 275.8 207 69.1
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 8.7e-72 274.2 209 65.6
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 1.1e-71 273.9 193 71.5
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 1.1e-71 273.9 175 75.4
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 1.5e-71 273.5 201 65.2
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 1.9e-71 273.1 201 65.2
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 2.5e-71 272.7 190 68.4
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 3.3e-71 272.3 210 65.2
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 3.3e-71 272.3 193 68.9
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 4.3e-71 271.9 205 66.3
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 5.7e-71 271.6 205 66.8
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 2.8e-70 269.2 204 66.7
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 2.8e-70 269.2 207 66.2
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 3.7e-70 268.9 193 67.4
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 4.8e-70 268.5 204 65.7
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 6.2e-70 268.1 202 66.3
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 1.4e-69 266.9 192 68.8
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 4.1e-69 265.4 190 70.5
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 2.0e-68 263.1 212 61.8
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 2.6e-68 262.7 318 50.6
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 3.4e-68 262.3 190 70.0
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 3.8e-67 258.8 177 70.6
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 1.1e-66 257.3 146 84.2
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 4.2e-66 255.4 208 60.6
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 1.2e-65 253.8 203 61.1
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 2.2e-62 243.0 193 61.7
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 4.1e-61 238.8 266 50.8
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 5.3e-61 238.4 188 63.3
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 8.5e-59 231.1 188 59.6
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 1.4e-56 223.8 140 74.3
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 1.7e-54 216.9 160 67.5
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 3.7e-54 215.7 188 58.0
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 6.3e-54 214.9 208 52.4
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.8e-53 213.4 154 66.9
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 1.2e-52 210.7 191 54.5
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 2.0e-52 209.9 154 64.9
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 1.3e-51 207.2 188 54.3
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 3.2e-50 202.6 152 65.1
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 7.2e-42 174.9 98 83.7
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 1.8e-40 170.2 183 49.7
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 2.6e-39 166.4 164 51.2
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 2.2e-38 163.3 183 47.0
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 7.0e-37 158.3 98 72.4
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.4e-32 144.1 134 59.7
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 6.8e-32 141.7 169 45.0
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 8.3e-30 134.8 80 76.2
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 7.7e-28 128.3 78 74.4
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 7.7e-28 128.3 78 74.4
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.5e-26 124.0 78 71.8
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 7.2e-26 121.7 112 56.2
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 3.0e-24 116.3 230 33.5
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 2.3e-19 100.1 61 77.0
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 6.6e-19 98.6 61 75.4
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 2.8e-17 93.2 77 62.3
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 4.4e-15 85.9 54 74.1
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 1.9e-10 70.5 39 82.1
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 2.8e-09 66.6 40 72.5
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 2.3e-08 63.5 40 67.5
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 2.3e-08 63.5 39 71.8
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 5.2e-08 62.4 35 82.9
Mapoly0122s0043 Marchantia polymorpha HOM05D029718 ORTHO05D026695 4.9e-06 55.8 95 34.7


User provided reference genes

Program Settings