Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 1.3e-102 376.3 184 100.0
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 4.2e-64 248.4 184 65.2
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 4.6e-63 245.0 184 65.2
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 1.1e-61 240.4 184 63.0
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 1.5e-61 240.0 184 65.8
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 5.6e-61 238.0 184 64.1
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 9.6e-61 237.3 184 63.6
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 4.8e-60 235.0 183 62.3
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 4.8e-60 235.0 184 61.4
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.8e-59 233.0 184 62.5
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 1.2e-58 230.3 184 63.6
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 1.5e-58 229.9 184 63.0
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 1.5e-58 229.9 184 59.8
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 2.0e-58 229.6 184 61.4
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 2.6e-58 229.2 185 62.2
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 3.4e-58 228.8 184 63.0
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 5.8e-58 228.0 183 60.7
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 5.8e-58 228.0 183 60.7
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 7.6e-58 227.6 184 61.4
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.3e-57 226.9 184 58.7
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 1.3e-57 226.9 184 59.2
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 2.2e-57 226.1 179 60.3
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 2.9e-57 225.7 184 58.2
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 2.9e-57 225.7 184 58.2
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 2.9e-57 225.7 184 58.2
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 3.8e-57 225.3 184 59.8
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 1.1e-56 223.8 205 56.1
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 1.9e-56 223.0 184 59.8
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 9.3e-56 220.7 184 57.1
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 1.6e-55 219.9 186 58.6
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 3.5e-55 218.8 184 56.5
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 6.0e-55 218.0 184 58.2
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 7.9e-55 217.6 184 58.2
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 7.9e-55 217.6 184 57.6
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 1.3e-54 216.9 184 57.6
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 1.7e-54 216.5 184 58.2
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 2.3e-54 216.1 184 58.2
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 2.3e-54 216.1 184 57.6
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 3.0e-54 215.7 184 56.5
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 3.0e-54 215.7 184 56.0
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 1.1e-53 213.8 184 57.1
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 1.1e-53 213.8 186 57.0
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 2.5e-53 212.6 184 56.0
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 3.3e-53 212.2 184 55.4
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 4.3e-53 211.8 184 54.3
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 4.3e-53 211.8 184 56.5
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 1.3e-52 210.3 195 53.8
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 2.1e-52 209.5 184 58.7
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 3.6e-52 208.8 184 55.4
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 6.2e-52 208.0 184 56.0
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 1.1e-51 207.2 186 55.9
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 1.8e-51 206.5 186 56.5
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 2.4e-51 206.1 184 55.4
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 2.4e-51 206.1 184 56.5
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 3.1e-51 205.7 184 54.9
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 6.9e-51 204.5 184 54.9
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 9.0e-51 204.1 186 54.8
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 9.0e-51 204.1 184 54.9
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 1.2e-50 203.8 184 54.9
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 1.2e-50 203.8 184 54.9
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 1.2e-50 203.8 184 54.9
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 1.2e-50 203.8 184 54.9
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 2.0e-50 203.0 184 54.9
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 2.0e-50 203.0 184 54.9
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 2.0e-50 203.0 184 54.9
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 3.4e-50 202.2 184 55.4
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 3.4e-50 202.2 184 53.8
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 3.4e-50 202.2 186 54.3
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 3.4e-50 202.2 201 50.7
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 4.5e-50 201.8 237 46.4
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 5.8e-50 201.4 184 54.3
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 7.6e-50 201.1 186 53.8
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 1.3e-49 200.3 184 53.3
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 1.3e-49 200.3 185 55.7
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 2.2e-49 199.5 184 51.6
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 3.8e-49 198.7 189 57.1
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 3.8e-49 198.7 184 54.3
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 4.9e-49 198.4 140 68.6
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 1.4e-48 196.8 184 53.3
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 2.4e-48 196.1 184 53.3
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 3.2e-48 195.7 184 52.7
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 3.2e-48 195.7 184 52.7
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 3.2e-48 195.7 184 52.2
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 7.1e-48 194.5 184 52.7
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 9.3e-48 194.1 185 55.1
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 9.3e-48 194.1 185 55.1
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 9.3e-48 194.1 209 47.8
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 9.3e-48 194.1 221 47.5
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 9.3e-48 194.1 169 59.8
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 1.6e-47 193.4 184 53.3
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 1.6e-47 193.4 184 53.8
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 4.6e-47 191.8 184 53.3
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 4.6e-47 191.8 184 52.7
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 7.9e-47 191.0 184 53.3
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 7.9e-47 191.0 184 53.3
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 1.8e-46 189.9 190 52.6
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 2.3e-46 189.5 184 52.2
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 2.3e-46 189.5 205 46.8
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 3.0e-46 189.1 212 46.2
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 3.0e-46 189.1 185 54.6
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 3.0e-46 189.1 185 54.6
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 3.9e-46 188.7 181 51.4
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 1.1e-45 187.2 188 48.9
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 2.5e-45 186.0 185 51.9
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 2.5e-45 186.0 140 67.1
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 2.5e-45 186.0 198 48.5
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 4.3e-45 185.3 184 52.2
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 7.4e-45 184.5 184 51.6
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 1.6e-44 183.3 181 47.5
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 2.8e-44 182.6 184 51.6
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 6.2e-44 181.4 170 50.6
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 2.0e-42 176.4 184 52.7
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 7.6e-42 174.5 184 47.3
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 2.2e-41 172.9 206 43.7
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 4.2e-40 168.7 153 54.2
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 1.6e-39 166.8 150 54.0
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 1.1e-37 160.6 183 48.1
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 5.3e-35 151.8 136 57.4
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 3.4e-34 149.1 141 50.4
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 1.0e-33 147.5 185 42.7
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 5.0e-33 145.2 145 48.3
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 9.3e-32 141.0 184 45.1
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 7.9e-31 137.9 189 41.3
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 1.0e-30 137.5 127 52.8
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 3.7e-28 129.0 185 39.5
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 4.8e-28 128.6 118 55.9
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 4.8e-28 128.6 185 38.9
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 4.1e-27 125.6 202 38.6
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 2.6e-26 122.9 184 39.7
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 7.7e-26 121.3 190 36.8
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 3.8e-25 119.0 93 61.3
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 2.5e-24 116.3 162 41.4
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 3.7e-20 102.4 92 55.4
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 1.4e-19 100.5 107 46.7
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 4.1e-19 99.0 112 52.7
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 5.3e-19 98.6 187 34.2
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 5.3e-19 98.6 187 33.7
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 1.5e-18 97.1 141 38.3
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 4.5e-18 95.5 185 34.1
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 2.7e-15 86.3 185 28.1
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 1.8e-14 83.6 179 30.7
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 9.7e-13 77.8 108 38.0
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 2.2e-12 76.6 86 46.5
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 2.9e-09 66.2 71 47.9


User provided reference genes

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