Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1842 Punica granatum HOM05D008139 ORTHO05D009872 6.8e-75 283.9 140 100.0
Prupe.2G122300 Prunus persica HOM05D008139 ORTHO05D009872 1.5e-18 96.7 90 53.3
Potri.017G037500 Populus trichocarpa HOM05D008139 ORTHO05D009872 2.0e-18 96.3 84 60.7
Atru.chr6.3155 Acer truncatum HOM05D008139 ORTHO05D009872 2.6e-18 95.9 88 52.3
Atru.chr6.3157 Acer truncatum HOM05D008139 ORTHO05D009872 7.6e-18 94.4 88 52.3
Potri.007G122500 Populus trichocarpa HOM05D008139 ORTHO05D009872 1.7e-17 93.2 84 58.3
Cfa014432 Carpinus fangiana HOM05D008139 ORTHO05D009872 2.2e-17 92.8 88 56.8
CiPaw.04G117200 Carya illinoinensis HOM05D008139 ORTHO05D009872 2.2e-17 92.8 90 54.4
MD07G1098300 Malus domestica HOM05D008139 ORTHO05D009872 2.9e-17 92.4 90 53.3
TWI36G0135 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 2.9e-17 92.4 84 52.4
Ciclev10017826m.g Citrus clementina HOM05D008139 ORTHO05D009872 8.4e-17 90.9 89 56.2
Sabra17G0024400 Salix brachista HOM05D008139 ORTHO05D009872 8.4e-17 90.9 91 54.9
Manes.13G103000 Manihot esculenta HOM05D008139 ORTHO05D009872 2.5e-16 89.4 84 56.0
RcHm_v2.0_Chr2g0126901 Rosa chinensis HOM05D008139 ORTHO05D009872 2.1e-15 86.3 84 52.4
TWI75G0563 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 2.1e-15 86.3 88 51.1
Medtr4g046720 Medicago truncatula HOM05D008139 ORTHO05D009872 2.7e-15 85.9 89 47.2
Lj3g0004995 Lotus japonicus HOM05D008139 ORTHO05D009872 3.5e-15 85.5 85 52.9
CSS0007440 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 7.9e-15 84.3 84 53.6
THA.LOC104816105 Tarenaya hassleriana HOM05D011011 ORTHO05D009872 1.0e-14 84.0 92 48.9
Hma1.2p1_0249F.1_g102430 Hydrangea macrophylla HOM05D008139 ORTHO05D009872 1.3e-14 83.6 84 53.6
COL.COLO4_15724 Corchorus olitorius HOM05D008139 ORTHO05D009872 1.8e-14 83.2 80 51.2
Gohir.D11G168166 Gossypium hirsutum HOM05D008139 ORTHO05D009872 3.0e-14 82.4 87 50.6
Gorai.007G179600 Gossypium raimondii HOM05D008139 ORTHO05D009872 3.0e-14 82.4 87 50.6
QL08p033688 Quercus lobata HOM05D008139 ORTHO05D009872 3.0e-14 82.4 84 53.6
Thecc.04G120400 Theobroma cacao HOM05D008139 ORTHO05D009872 3.0e-14 82.4 84 52.4
Gohir.A11G161900 Gossypium hirsutum HOM05D008139 ORTHO05D009872 3.9e-14 82.0 87 51.7
Lalb_Chr03g0028851 Lupinus albus HOM05D008139 ORTHO05D009872 3.9e-14 82.0 84 50.0
Prupe.3G131300 Prunus persica HOM05D008139 ORTHO05D009872 5.1e-14 81.6 88 47.7
Duzib133G0708 Durio zibethinus HOM05D008139 ORTHO05D009872 6.7e-14 81.3 84 52.4
Eucgr.A01721 Eucalyptus grandis HOM05D008139 ORTHO05D009872 6.7e-14 81.3 85 52.9
Phvul.011G105800 Phaseolus vulgaris HOM05D008139 ORTHO05D009872 1.1e-13 80.5 92 47.8
Solyc12g089070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 1.5e-13 80.1 106 47.2
Nitab4.5_0003246g0060 Nicotiana tabacum HOM05D008139 ORTHO05D009872 1.9e-13 79.7 134 37.3
Nitab4.5_0000110g0510 Nicotiana tabacum HOM05D008139 ORTHO05D009872 2.5e-13 79.3 91 48.4
ClCG02G001810 Citrullus lanatus HOM05D008139 ORTHO05D009872 3.3e-13 79.0 84 48.8
SalBow8G2406 Salvia bowleyana HOM05D008139 ORTHO05D009872 3.3e-13 79.0 81 51.9
SalBow8G2479 Salvia bowleyana HOM05D008139 ORTHO05D009872 3.3e-13 79.0 81 51.9
CSS0007820 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 4.3e-13 78.6 90 48.9
FAN02G4280 Fragaria x ananassa HOM05D008139 ORTHO05D009872 4.3e-13 78.6 84 47.6
Glyma.12G100900 Glycine max HOM05D008139 ORTHO05D009872 4.3e-13 78.6 84 52.4
CAN.G1126.30 Capsicum annuum HOM05D008139 ORTHO05D009872 5.7e-13 78.2 95 47.4
Peaxi162Scf00057g00045 Petunia axillaris HOM05D008139 ORTHO05D009872 7.4e-13 77.8 113 44.2
TPR.G19049 Trifolium pratense HOM05D008139 ORTHO05D009872 1.3e-12 77.0 89 46.1
DCAR_019772 Daucus carota HOM05D008139 ORTHO05D009872 2.8e-12 75.9 104 42.3
Nitab4.5_0000790g0110 Nicotiana tabacum HOM05D008139 ORTHO05D009872 8.2e-12 74.3 81 50.6
Cc10_g03180 Coffea canephora HOM05D008139 ORTHO05D009872 1.1e-11 73.9 84 44.0
Nn1g07030 Nelumbo nucifera HOM05D008139 ORTHO05D009872 1.1e-11 73.9 84 46.4
Sed0019249 Sechium edule HOM05D008139 ORTHO05D009872 1.1e-11 73.9 84 42.9
AT2G32360 Arabidopsis thaliana HOM05D011011 ORTHO05D009872 1.4e-11 73.6 96 42.7
PGSC0003DMG400045933 Solanum tuberosum HOM05D008139 ORTHO05D009872 2.4e-11 72.8 81 48.1
Lsat_1_v5_gn_5_103860 Lactuca sativa HOM05D008139 ORTHO05D009872 3.1e-11 72.4 83 50.6
AL4G27740 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 4.1e-11 72.0 88 44.3
A03p18150 Brassica napus HOM05D011011 ORTHO05D009872 5.3e-11 71.6 95 41.1
BraA03t11075Z Brassica rapa HOM05D011011 ORTHO05D009872 5.3e-11 71.6 95 41.1
BcaC02g07938 Brassica carinata HOM05D011011 ORTHO05D009872 6.9e-11 71.2 85 43.5
BolC4t27657H Brassica oleracea HOM05D011011 ORTHO05D009872 6.9e-11 71.2 85 43.5
Lsat_1_v5_gn_8_128280 Lactuca sativa HOM05D008139 ORTHO05D009872 6.9e-11 71.2 80 51.2
Rhsim06G0158900 Rhododendron simsii HOM05D008139 ORTHO05D009872 6.9e-11 71.2 83 44.6
Solyc04g080070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 6.9e-11 71.2 91 45.1
Sopen04g033660 Solanum pennellii HOM05D008139 ORTHO05D009872 6.9e-11 71.2 91 45.1
PGSC0003DMG400005169 Solanum tuberosum HOM05D008139 ORTHO05D009872 6.9e-11 71.2 91 46.2
BolC3t14501H Brassica oleracea HOM05D011011 ORTHO05D009872 1.2e-10 70.5 86 41.9
SGA_v2.0_scaffold374G50235 Striga asiatica HOM05D008139 ORTHO05D009872 1.2e-10 70.5 103 36.9
TAR626G0589 Trochodendron aralioides HOM05D008139 ORTHO05D009872 1.2e-10 70.5 84 45.2
Migut.N00505 Erythranthe guttata HOM05D008139 ORTHO05D009872 1.5e-10 70.1 102 38.2
AL125U10020 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 2.0e-10 69.7 88 43.2
BcaB01g03982 Brassica carinata HOM05D011011 ORTHO05D009872 2.0e-10 69.7 95 40.0
BcaC01g05908 Brassica carinata HOM05D011011 ORTHO05D009872 2.0e-10 69.7 95 40.0
C03p21180 Brassica napus HOM05D011011 ORTHO05D009872 2.0e-10 69.7 95 40.0
CAN.G1139.6 Capsicum annuum HOM05D008139 ORTHO05D009872 2.0e-10 69.7 81 48.1
TAR626G0598 Trochodendron aralioides HOM05D008139 ORTHO05D009872 2.0e-10 69.7 84 47.6
Carub.0004s1371 Capsella rubella HOM05D011011 ORTHO05D009872 2.6e-10 69.3 90 41.1
C04p61740 Brassica napus HOM05D011011 ORTHO05D009872 3.4e-10 68.9 85 42.4
MELO3C018806.2 Cucumis melo HOM05D008139 ORTHO05D009872 3.4e-10 68.9 85 43.5
BcaB01g03981 Brassica carinata HOM05D011011 ORTHO05D009872 4.5e-10 68.6 95 41.1
Dinv02745 Davidia involucrata HOM05D008139 ORTHO05D009872 4.5e-10 68.6 74 50.0
SGA_v2.0_scaffold48G18067 Striga asiatica HOM05D008139 ORTHO05D009872 4.5e-10 68.6 88 42.0
CsaV3_7G003730 Cucumis sativus L. HOM05D008139 ORTHO05D009872 5.9e-10 68.2 86 43.0
Nitab4.5_0002296g0050 Nicotiana tabacum HOM05D008139 ORTHO05D009872 5.9e-10 68.2 72 50.0
Sp4g14730 Schrenkiella parvula HOM05D011011 ORTHO05D009872 5.9e-10 68.2 106 35.8
unitig_46.g17928 Utricularia gibba HOM05D008139 ORTHO05D009872 7.6e-10 67.8 104 40.4
Migut.C00700 Erythranthe guttata HOM05D008139 ORTHO05D009872 1.0e-09 67.4 82 46.3
BcaB06g28588 Brassica carinata HOM05D011011 ORTHO05D009872 2.2e-09 66.2 86 40.7
CARHR126180 Cardamine hirsuta HOM05D011011 ORTHO05D009872 2.2e-09 66.2 87 42.5
Aqoxy4G01991 Aquilegia oxysepala HOM05D008139 ORTHO05D009872 4.2e-08 62.0 94 37.2


User provided reference genes

Program Settings