Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 1.1e-72 276.6 143 100.0
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 5.2e-62 241.1 146 85.6
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 1.1e-61 240.0 143 83.9
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 2.8e-60 235.3 144 82.6
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 1.1e-59 233.4 144 83.3
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 3.1e-59 231.9 144 82.6
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 7.0e-59 230.7 143 82.5
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 1.2e-58 229.9 144 82.6
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 1.6e-58 229.6 143 80.4
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.6e-58 229.6 143 81.8
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 1.0e-57 226.9 143 80.4
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 1.0e-57 226.9 144 81.9
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 1.0e-57 226.9 143 81.8
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 1.3e-57 226.5 144 81.9
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 2.2e-57 225.7 144 80.6
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 3.8e-57 224.9 143 79.7
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 5.0e-57 224.6 143 79.0
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 5.0e-57 224.6 143 79.7
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 8.5e-57 223.8 144 80.6
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 1.1e-56 223.4 143 79.7
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.5e-56 223.0 144 81.9
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 1.9e-56 222.6 144 79.2
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 2.5e-56 222.2 143 79.7
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 3.2e-56 221.9 143 79.7
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 3.2e-56 221.9 143 79.7
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 4.2e-56 221.5 143 80.4
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 5.5e-56 221.1 133 85.7
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 9.4e-56 220.3 144 80.6
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 2.1e-55 219.2 143 79.0
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 2.1e-55 219.2 143 77.6
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 2.7e-55 218.8 144 79.2
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 3.6e-55 218.4 150 76.0
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 3.6e-55 218.4 142 78.2
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 4.7e-55 218.0 144 80.6
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 6.1e-55 217.6 144 78.5
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 1.0e-54 216.9 133 86.5
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 1.4e-54 216.5 144 80.6
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 1.8e-54 216.1 141 78.0
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 2.3e-54 215.7 131 84.0
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 5.2e-54 214.5 147 78.2
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 6.7e-54 214.2 144 75.7
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 8.8e-54 213.8 143 79.0
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 8.8e-54 213.8 145 77.9
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 8.8e-54 213.8 143 76.9
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 1.2e-53 213.4 146 74.0
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 1.2e-53 213.4 145 75.9
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 1.2e-53 213.4 144 77.8
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 1.5e-53 213.0 144 76.4
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 1.5e-53 213.0 143 76.9
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 2.6e-53 212.2 144 75.0
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 7.5e-53 210.7 145 75.2
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 7.5e-53 210.7 147 74.8
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 9.7e-53 210.3 143 74.8
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 1.3e-52 209.9 145 74.5
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 1.3e-52 209.9 139 76.3
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 1.7e-52 209.5 145 76.6
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 1.7e-52 209.5 143 77.6
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 1.7e-52 209.5 143 77.6
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 2.2e-52 209.1 143 73.4
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 2.8e-52 208.8 148 74.3
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 2.8e-52 208.8 148 74.3
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 2.8e-52 208.8 148 74.3
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 2.8e-52 208.8 145 73.8
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 3.7e-52 208.4 145 73.8
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 3.7e-52 208.4 144 73.6
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 3.7e-52 208.4 144 76.4
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 4.8e-52 208.0 144 75.0
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 4.8e-52 208.0 144 75.0
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 8.2e-52 207.2 133 78.9
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 8.2e-52 207.2 146 78.1
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 8.2e-52 207.2 146 78.1
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 8.2e-52 207.2 143 74.8
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 1.1e-51 206.8 145 73.8
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 1.1e-51 206.8 144 75.7
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 1.1e-51 206.8 143 76.2
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 1.4e-51 206.5 143 74.1
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 3.1e-51 205.3 143 74.1
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 4.1e-51 204.9 144 76.4
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 4.1e-51 204.9 148 73.0
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 5.3e-51 204.5 143 74.1
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 5.3e-51 204.5 143 75.5
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 5.3e-51 204.5 143 76.2
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 5.3e-51 204.5 147 73.5
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 5.3e-51 204.5 144 75.0
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 5.3e-51 204.5 144 75.0
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 7.0e-51 204.1 145 75.9
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 1.2e-50 203.4 148 74.3
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 1.6e-50 203.0 147 72.8
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.6e-50 203.0 143 74.8
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 2.0e-50 202.6 152 69.7
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 2.0e-50 202.6 143 72.7
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 2.0e-50 202.6 140 76.4
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 2.0e-50 202.6 112 87.5
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 4.5e-50 201.4 165 67.3
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 7.7e-50 200.7 147 73.5
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 7.7e-50 200.7 147 73.5
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 7.7e-50 200.7 143 73.4
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.0e-49 200.3 146 73.3
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 1.0e-49 200.3 147 72.1
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 1.0e-49 200.3 148 70.9
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 1.0e-49 200.3 144 74.3
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 1.0e-49 200.3 136 75.7
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.3e-49 199.9 141 75.2
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 2.9e-49 198.7 171 66.7
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 2.9e-49 198.7 147 70.1
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 2.9e-49 198.7 147 72.8
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 3.8e-49 198.4 114 86.0
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 3.8e-49 198.4 143 72.0
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 5.0e-49 198.0 146 72.6
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 1.5e-48 196.4 220 54.1
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 4.2e-48 194.9 143 72.7
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 9.4e-48 193.7 145 71.0
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 1.6e-47 193.0 146 69.2
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.6e-47 193.0 116 84.5
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 2.1e-47 192.6 174 60.9
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 1.0e-46 190.3 145 70.3
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 2.3e-46 189.1 110 84.5
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 1.5e-45 186.4 112 80.4
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 1.3e-44 183.3 126 75.4
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.7e-44 183.0 116 78.4
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 3.7e-44 181.8 111 82.0
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 2.7e-42 175.6 107 82.2
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 3.8e-41 171.8 109 78.0
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.5e-40 169.9 204 50.5
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 4.2e-40 168.3 91 90.1
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 4.7e-39 164.9 92 88.0
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 8.0e-39 164.1 90 90.0
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 8.9e-38 160.6 88 88.6
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 2.6e-37 159.1 109 74.3
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 1.1e-32 143.7 98 75.5
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 1.2e-31 140.2 123 60.2
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 8.0e-31 137.5 108 63.9
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 3.4e-29 132.1 112 62.5
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 2.9e-28 129.0 145 54.5
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 5.0e-25 118.2 108 57.4
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 4.3e-24 115.2 63 93.7
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 8.9e-22 107.5 60 90.0
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 1.9e-19 99.8 86 54.7
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 4.6e-18 95.1 106 48.1
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 6.0e-18 94.7 89 58.4
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 2.6e-13 79.3 63 63.5
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 9.9e-13 77.4 113 43.4
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 1.7e-12 76.6 143 37.1
CSS0004783 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 2.4e-11 72.8 59 66.1
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 7.1e-11 71.2 112 38.4
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 1.7e-09 66.6 48 68.8
RcHm_v2.0_Chr2g0130991 Rosa chinensis HOM05D004802 ORTHO05D005591 3.0e-09 65.9 66 51.5
Haze_07453 Corylus avellana HOM05D004802 ORTHO05D005591 1.1e-08 63.9 35 88.6
A06p04960 Brassica napus HOM05D005594 ORTHO05D006403 2.1e-07 59.7 58 62.1
SHI01130 Sapria himalayana HOM05D004802 ORTHO05D005591 3.6e-07 58.9 54 51.9
Eucgr.H04858 Eucalyptus grandis HOM05D004802 ORTHO05D005591 3.1e-06 55.8 59 52.5
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 5.2e-06 55.1 43 65.1
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 5.2e-06 55.1 43 65.1


User provided reference genes

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