Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 1.1e-78 296.6 148 100.0
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 4.1e-46 188.3 149 69.1
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 5.0e-44 181.4 150 69.3
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 6.5e-44 181.0 148 69.6
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 8.6e-44 180.6 148 69.6
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 1.5e-43 179.9 148 70.3
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 1.6e-42 176.4 145 68.3
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 3.6e-42 175.3 148 67.6
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 6.1e-42 174.5 149 69.1
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 1.0e-41 173.7 149 67.8
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 1.4e-41 173.3 150 66.0
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 1.8e-41 172.9 149 67.8
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 3.0e-41 172.2 151 67.5
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 4.0e-41 171.8 151 66.2
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 3.4e-40 168.7 151 64.9
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 3.4e-40 168.7 151 64.9
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 4.4e-40 168.3 150 64.7
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 7.5e-40 167.5 150 65.3
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 1.3e-39 166.8 150 62.7
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 1.7e-39 166.4 145 66.9
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 1.7e-39 166.4 148 63.5
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 1.7e-39 166.4 149 63.1
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 1.7e-39 166.4 149 64.4
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 2.8e-39 165.6 151 62.3
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 2.8e-39 165.6 151 62.3
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 2.8e-39 165.6 154 63.0
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 4.9e-39 164.9 151 64.2
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 8.3e-39 164.1 143 64.3
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 1.1e-38 163.7 154 61.7
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 1.4e-38 163.3 149 63.8
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 2.4e-38 162.5 151 61.6
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 3.1e-38 162.2 148 62.2
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 4.1e-38 161.8 144 64.6
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 9.2e-38 160.6 150 62.0
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 2.0e-37 159.5 153 62.1
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 2.7e-37 159.1 146 62.3
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 3.5e-37 158.7 150 62.7
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 1.0e-36 157.1 142 62.0
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 1.0e-36 157.1 143 62.9
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 1.7e-36 156.4 142 61.3
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 2.3e-36 156.0 143 64.3
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 2.9e-36 155.6 146 62.3
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 3.8e-36 155.2 144 63.2
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 3.8e-36 155.2 146 62.3
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 8.6e-36 154.1 144 61.1
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 1.1e-35 153.7 142 57.7
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 1.5e-35 153.3 145 57.2
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 1.5e-35 153.3 145 62.8
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 3.3e-35 152.1 147 59.9
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 3.3e-35 152.1 147 59.9
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 4.3e-35 151.8 183 53.0
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 4.3e-35 151.8 144 56.9
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 5.6e-35 151.4 131 67.9
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 9.5e-35 150.6 136 61.8
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 9.5e-35 150.6 143 62.2
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 9.5e-35 150.6 147 59.2
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 2.1e-34 149.4 146 61.0
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 3.6e-34 148.7 131 61.1
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 6.1e-34 147.9 142 62.0
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 8.0e-34 147.5 143 60.8
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 8.0e-34 147.5 142 62.0
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 8.0e-34 147.5 144 61.1
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 1.0e-33 147.1 135 61.5
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 1.0e-33 147.1 144 56.2
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 1.4e-33 146.7 142 55.6
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 1.8e-33 146.4 142 55.6
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 1.8e-33 146.4 145 60.7
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 2.3e-33 146.0 145 59.3
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 2.3e-33 146.0 147 59.2
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 3.0e-33 145.6 143 60.1
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 5.2e-33 144.8 143 57.3
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 6.8e-33 144.4 147 57.8
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 8.9e-33 144.1 148 60.8
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 8.9e-33 144.1 145 57.9
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 1.2e-32 143.7 147 59.9
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 1.5e-32 143.3 149 57.7
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 2.0e-32 142.9 142 59.9
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 3.4e-32 142.1 142 56.3
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 4.4e-32 141.7 142 59.9
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 1.7e-31 139.8 135 60.0
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.7e-31 139.8 142 56.3
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 2.9e-31 139.0 132 62.9
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 2.9e-31 139.0 126 62.7
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 3.7e-31 138.7 146 54.1
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 3.7e-31 138.7 145 54.5
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 6.4e-31 137.9 147 56.5
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 8.3e-31 137.5 147 56.5
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 1.1e-30 137.1 139 61.2
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.1e-30 137.1 141 56.0
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 1.4e-30 136.7 146 53.4
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 1.4e-30 136.7 148 55.4
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 2.4e-30 136.0 129 62.8
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 3.2e-30 135.6 127 63.0
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 3.2e-30 135.6 150 57.3
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 4.1e-30 135.2 142 57.0
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 5.4e-30 134.8 146 54.8
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 2.7e-29 132.5 132 59.8
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 3.5e-29 132.1 153 53.6
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 3.5e-29 132.1 131 60.3
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 3.5e-29 132.1 131 60.3
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 3.5e-29 132.1 142 60.6
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 6.6e-28 127.9 138 55.8
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 8.6e-28 127.5 133 59.4
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 8.6e-28 127.5 129 60.5
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 3.3e-27 125.6 145 52.4
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 4.3e-27 125.2 124 59.7
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 9.5e-27 124.0 129 59.7
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 6.2e-26 121.3 132 56.8
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 1.1e-25 120.6 93 74.2
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 2.3e-25 119.4 132 56.8
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 8.9e-25 117.5 117 64.1
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 1.4e-22 110.2 128 58.6
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 1.4e-22 110.2 128 52.3
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 5.4e-22 108.2 148 48.0
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 1.6e-21 106.7 147 44.9
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 6.0e-21 104.8 146 46.6
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 1.7e-20 103.2 149 49.0
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 2.3e-20 102.8 127 52.8
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 1.1e-19 100.5 148 45.9
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 3.3e-19 99.0 92 64.1
TAR626G0711 Trochodendron aralioides HOM05D005924 ORTHO05D007290 7.3e-19 97.8 129 47.3
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 6.8e-17 91.3 108 50.0
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 8.9e-17 90.9 156 44.9
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 4.9e-15 85.1 99 54.5
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 7.1e-14 81.3 97 57.7
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 6.0e-13 78.2 97 55.7
Os03g0412200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 4.7e-10 68.6 91 42.9
PSO210G6050 Papaver somniferum HOM05D000045 ORTHO05D000067 4.4e-08 62.0 88 45.5
AagrBONN_evm.TU.Sc2ySwM_340.252 Anthoceros agrestis HOM05D005924 ORTHO05D007290 2.9e-07 59.3 101 40.6
TAR371G0507 Trochodendron aralioides HOM05D005924 ORTHO05D007290 4.9e-07 58.5 86 41.9
Zm00001eb019850 Zea mays HOM05D005924 ORTHO05D007290 6.4e-07 58.2 113 39.8
arahy.Tifrunner.gnm1.ann1.7WZH36 Arachis hypogaea HOM05D005924 ORTHO05D007290 8.4e-07 57.8 55 52.7


User provided reference genes

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