Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 7.1e-215 750.4 387 100.0
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 4.1e-162 575.1 384 76.8
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 2.7e-158 562.4 387 74.9
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 1.8e-157 559.7 391 74.7
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 2.0e-156 556.2 389 75.1
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 5.7e-156 554.7 388 74.0
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 8.2e-155 550.8 390 74.1
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 1.1e-154 550.4 388 74.0
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.1e-154 548.9 388 73.2
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 7.0e-154 547.7 388 74.5
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 3.5e-153 545.4 388 73.2
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 1.3e-152 543.5 388 72.4
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 1.3e-152 543.5 388 73.2
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 8.5e-152 540.8 388 72.7
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 8.5e-152 540.8 388 72.2
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 8.5e-152 540.8 388 72.4
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 1.1e-151 540.4 388 72.9
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 1.5e-151 540.0 386 73.1
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 1.9e-151 539.7 388 74.2
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 5.5e-151 538.1 388 72.4
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 7.2e-151 537.7 391 71.6
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 9.4e-151 537.3 388 72.4
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 1.6e-150 536.6 383 72.8
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 2.1e-150 536.2 385 71.9
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 3.6e-150 535.4 391 71.4
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 1.4e-149 533.5 388 72.2
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.3e-149 532.7 391 70.8
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 4.0e-149 531.9 388 71.9
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 4.0e-149 531.9 384 71.9
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 5.2e-149 531.6 387 70.8
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 8.8e-149 530.8 387 70.3
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 8.8e-149 530.8 387 70.8
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 1.2e-148 530.4 384 70.3
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 1.5e-148 530.0 389 70.2
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.6e-148 529.3 388 70.4
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 4.4e-148 528.5 388 69.8
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 9.7e-148 527.3 386 71.0
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 9.7e-148 527.3 387 70.5
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 2.8e-147 525.8 389 71.5
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 4.8e-147 525.0 388 72.7
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 4.8e-147 525.0 388 70.1
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 6.3e-147 524.6 391 69.6
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 6.3e-147 524.6 393 71.8
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 4.1e-146 521.9 384 70.8
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 4.1e-146 521.9 391 69.8
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 5.3e-146 521.5 388 70.6
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 9.1e-146 520.8 388 69.3
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 9.1e-146 520.8 406 68.5
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 1.6e-145 520.0 385 71.9
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 2.0e-145 519.6 383 70.0
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.0e-145 519.6 388 70.9
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 3.5e-145 518.8 383 70.0
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 4.5e-145 518.5 389 70.2
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 4.5e-145 518.5 388 70.6
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 5.9e-145 518.1 385 71.4
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 7.7e-145 517.7 387 69.0
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 2.2e-144 516.2 387 69.3
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 8.5e-144 514.2 382 69.6
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 8.5e-144 514.2 384 69.8
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 1.5e-143 513.5 384 70.6
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 1.5e-143 513.5 382 68.1
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.9e-143 513.1 385 70.4
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 2.5e-143 512.7 389 69.4
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 9.4e-143 510.8 391 68.0
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 4.7e-142 508.4 387 68.2
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 1.0e-141 507.3 399 68.2
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.8e-141 506.5 420 65.7
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 5.2e-141 505.0 420 65.2
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 5.2e-141 505.0 389 68.6
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 5.2e-141 505.0 389 68.6
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 1.5e-140 503.4 385 69.9
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.6e-140 502.7 420 65.5
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 3.4e-140 502.3 394 67.8
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 3.4e-140 502.3 377 67.9
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 9.8e-140 500.7 420 65.2
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 6.3e-139 498.0 388 68.0
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 5.4e-138 495.0 388 69.1
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 5.4e-138 495.0 391 66.5
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 4.5e-137 491.9 388 67.8
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 7.7e-137 491.1 418 64.1
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 1.7e-136 490.0 384 67.4
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 1.6e-134 483.4 386 66.3
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 4.7e-134 481.9 388 65.7
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 2.3e-133 479.6 388 66.0
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 2.3e-133 479.6 387 65.9
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 2.3e-133 479.6 356 70.2
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 5.2e-133 478.4 389 65.3
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 6.8e-133 478.0 388 65.5
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 8.9e-133 477.6 384 66.1
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 1.5e-132 476.9 384 66.1
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 1.5e-132 476.9 384 66.1
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 2.6e-132 476.1 349 70.8
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 3.4e-132 475.7 388 65.2
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 4.4e-132 475.3 387 66.1
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 4.4e-132 475.3 385 66.5
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 9.8e-132 474.2 388 66.8
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 1.7e-131 473.4 385 66.2
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 2.2e-131 473.0 385 66.0
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 1.1e-130 470.7 385 66.5
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 1.4e-130 470.3 385 66.2
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 3.1e-130 469.2 385 65.7
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 9.2e-130 467.6 388 66.2
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 5.9e-129 464.9 341 70.4
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 5.9e-129 464.9 349 71.3
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.3e-128 463.8 349 71.6
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 9.5e-127 457.6 387 64.1
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 6.1e-126 454.9 385 64.4
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 6.8e-125 451.4 385 63.9
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 1.3e-123 447.2 385 63.1
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 2.9e-123 446.0 336 67.0
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 3.0e-120 436.0 389 61.2
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 3.3e-119 432.6 385 62.9
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 5.6e-119 431.8 390 60.0
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 3.1e-117 426.0 399 58.9
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 6.8e-117 424.9 393 57.3
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 2.6e-116 422.9 390 57.4
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 2.7e-113 412.9 378 58.2
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 5.1e-112 408.7 391 57.8
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 4.0e-109 399.1 406 55.4
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 1.5e-108 397.1 398 53.8
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 3.7e-107 392.5 289 67.1
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.0e-104 384.4 384 57.0
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 5.4e-98 362.1 384 55.5
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 6.9e-93 345.1 414 49.0
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 4.2e-90 335.9 270 64.4
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 8.1e-86 321.6 440 43.6
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 8.7e-80 301.6 369 46.6
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 9.0e-77 291.6 298 56.4
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 2.0e-76 290.4 264 57.2
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 1.1e-74 284.6 385 43.4
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 5.6e-71 272.3 225 62.7
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 5.3e-61 239.2 463 35.0
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 2.7e-57 226.9 168 70.2
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 3.1e-53 213.4 241 49.4
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.5e-50 203.8 142 73.9
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 4.7e-49 199.5 152 73.0
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 1.6e-41 174.5 128 72.7
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.3e-35 154.8 404 31.2
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.9e-34 151.0 173 52.0
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 1.4e-32 144.8 89 84.3
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 7.0e-29 132.5 79 83.5
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 6.5e-27 125.9 108 61.1
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 8.0e-25 119.0 213 39.0
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 1.8e-24 117.9 167 41.3
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 2.4e-21 107.5 149 49.0
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 6.6e-19 99.4 158 44.9
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 1.0e-16 92.0 141 46.8
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 2.3e-16 90.9 122 50.0
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 6.8e-16 89.4 99 49.5
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 8.3e-14 82.4 98 51.0
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 2.4e-13 80.9 82 52.4
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 2.0e-12 77.8 99 48.5
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 3.5e-12 77.0 52 69.2
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 2.9e-11 73.9 127 46.5
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 3.9e-11 73.6 87 47.1
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 7.3e-10 69.3 41 82.9
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 9.5e-10 68.9 130 43.8
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.2e-09 68.6 51 64.7
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 4.0e-08 63.5 71 43.7
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 1.2e-07 62.0 123 42.3
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 5.8e-07 59.7 36 77.8
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 1.3e-06 58.5 38 76.3
Zm00001eb406200 Zea mays HOM05D004239 ORTHO05D005191 1.7e-06 58.2 80 41.2
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 2.2e-06 57.8 40 75.0


User provided reference genes

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