Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1696 Punica granatum HOM05D006541 ORTHO05D008471 7.6e-231 803.5 415 100.0
Eucgr.B00491 Eucalyptus grandis HOM05D006541 ORTHO05D008471 1.6e-167 593.2 420 73.8
QL10p016702 Quercus lobata HOM05D006541 ORTHO05D008471 8.3e-153 544.3 432 68.3
Dinv38701 Davidia involucrata HOM05D006541 ORTHO05D008471 4.2e-149 531.9 424 67.5
GSVIVG01008019001 Vitis vinifera HOM05D006541 ORTHO05D008471 6.1e-148 528.1 418 67.9
Ca_21826_v3 Cicer arietinum L. HOM05D006541 ORTHO05D008471 1.4e-147 526.9 430 65.6
Psat4g051480 Pisum sativum HOM05D006541 ORTHO05D008471 5.2e-147 525.0 434 65.0
Medtr4g108590 Medicago truncatula HOM05D006541 ORTHO05D008471 8.8e-147 524.2 432 65.3
VMungo1215G1397 Vigna mungo HOM05D006541 ORTHO05D008471 5.7e-146 521.5 432 66.7
TAR629G1448 Trochodendron aralioides HOM05D006541 ORTHO05D008471 2.2e-145 519.6 416 66.1
Prupe.5G192200 Prunus persica HOM05D006541 ORTHO05D008471 4.9e-145 518.5 425 66.8
Duzib205G0457 Durio zibethinus HOM05D006541 ORTHO05D008471 2.4e-144 516.2 402 67.7
Lj4g0004556 Lotus japonicus HOM05D006541 ORTHO05D008471 2.4e-144 516.2 394 68.0
Cfa018953 Carpinus fangiana HOM05D006541 ORTHO05D008471 7.0e-144 514.6 417 68.6
Phvul.003G190700 Phaseolus vulgaris HOM05D006541 ORTHO05D008471 9.2e-144 514.2 429 65.0
Glyma.17G099300 Glycine max HOM05D006541 ORTHO05D008471 1.6e-143 513.5 430 65.1
Lj5A111T86 Lonicera japonica HOM05D006541 ORTHO05D008471 2.7e-143 512.7 383 70.2
CiPaw.11G043400 Carya illinoinensis HOM05D006541 ORTHO05D008471 2.3e-142 509.6 388 70.1
Lalb_Chr07g0178001 Lupinus albus HOM05D006541 ORTHO05D008471 2.3e-142 509.6 387 69.0
TPR.G34732 Trifolium pratense HOM05D006541 ORTHO05D008471 1.5e-141 506.9 439 62.6
arahy.Tifrunner.gnm1.ann1.84ES4F Arachis hypogaea HOM05D006541 ORTHO05D008471 9.5e-141 504.2 428 65.0
TWI60G0844 Tripterygium wilfordii HOM05D006541 ORTHO05D008471 1.2e-140 503.8 401 68.3
MD14G1199100 Malus domestica HOM05D006541 ORTHO05D008471 1.6e-140 503.4 426 64.6
Atru.chr9.2260 Acer truncatum HOM05D006541 ORTHO05D008471 2.8e-140 502.7 404 65.6
arahy.Tifrunner.gnm1.ann1.ZY6HCY Arachis hypogaea HOM05D006541 ORTHO05D008471 2.8e-140 502.7 428 64.7
Thecc.03G085100 Theobroma cacao HOM05D006541 ORTHO05D008471 3.6e-140 502.3 400 67.0
Gohir.A03G066400 Gossypium hirsutum HOM05D006541 ORTHO05D008471 6.1e-140 501.5 398 67.3
Nn4g23149 Nelumbo nucifera HOM05D006541 ORTHO05D008471 8.0e-140 501.1 414 63.5
FAN04G2599 Fragaria x ananassa HOM05D006541 ORTHO05D008471 8.9e-139 497.7 426 64.3
Hund02657 Selenicereus undatus HOM05D006541 ORTHO05D008471 8.9e-139 497.7 410 64.1
THA.LOC104821445 Tarenaya hassleriana HOM05D006541 ORTHO05D008471 8.9e-139 497.7 430 61.9
Gohir.D03G093000 Gossypium hirsutum HOM05D006541 ORTHO05D008471 1.2e-138 497.3 386 67.6
RcHm_v2.0_Chr7g0181151 Rosa chinensis HOM05D006541 ORTHO05D008471 2.0e-138 496.5 427 64.4
FAN18G0374 Fragaria x ananassa HOM05D006541 ORTHO05D008471 5.7e-138 495.0 430 62.8
Cc04_g16740 Coffea canephora HOM05D006541 ORTHO05D008471 1.7e-137 493.4 381 67.7
CAN.G837.10 Capsicum annuum HOM05D006541 ORTHO05D008471 2.2e-137 493.0 436 62.6
Rhsim08G0155500 Rhododendron simsii HOM05D006541 ORTHO05D008471 2.9e-137 492.7 350 72.9
Nitab4.5_0000842g0050 Nicotiana tabacum HOM05D006541 ORTHO05D008471 3.7e-137 492.3 440 62.7
AL5G26900 Arabidopsis lyrata HOM05D006541 ORTHO05D008471 7.0e-136 488.0 412 63.8
Hma1.2p1_0104F.1_g049970 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 7.0e-136 488.0 378 69.3
MD06G1192400 Malus domestica HOM05D006541 ORTHO05D008471 9.2e-136 487.6 456 61.6
AUR62021701 Chenopodium quinoa HOM05D006541 ORTHO05D008471 1.6e-135 486.9 410 62.2
AUR62008395 Chenopodium quinoa HOM05D006541 ORTHO05D008471 2.0e-135 486.5 410 61.7
Nitab4.5_0012137g0020 Nicotiana tabacum HOM05D006541 ORTHO05D008471 2.0e-135 486.5 440 61.6
Gorai.003G096900 Gossypium raimondii HOM05D006541 ORTHO05D008471 2.7e-135 486.1 431 62.4
A06p20010 Brassica napus HOM05D006541 ORTHO05D008471 3.5e-135 485.7 414 64.3
BraA06t25087Z Brassica rapa HOM05D006541 ORTHO05D008471 3.5e-135 485.7 414 64.3
Ciclev10020397m.g Citrus clementina HOM05D006541 ORTHO05D008471 3.5e-135 485.7 411 64.0
Peaxi162Scf00274g00732 Petunia axillaris HOM05D006541 ORTHO05D008471 5.9e-135 485.0 437 61.3
Thhalv10010423m.g Eutrema salsugineum HOM05D006541 ORTHO05D008471 1.3e-134 483.8 415 62.2
BolC3t19470H Brassica oleracea HOM05D006541 ORTHO05D008471 3.9e-134 482.3 414 63.0
CARHR156290 Cardamine hirsuta HOM05D006541 ORTHO05D008471 3.9e-134 482.3 414 62.1
FAN08G2919 Fragaria x ananassa HOM05D006541 ORTHO05D008471 3.9e-134 482.3 426 63.6
FvH4_5g15050 Fragaria vesca HOM05D006541 ORTHO05D008471 5.0e-134 481.9 430 61.6
DCAR_016545 Daucus carota HOM05D006541 ORTHO05D008471 1.1e-133 480.7 380 66.6
Oeu006508.1 Olea europaea HOM05D006541 ORTHO05D008471 1.1e-133 480.7 380 65.8
AT3G47610 Arabidopsis thaliana HOM05D006541 ORTHO05D008471 2.5e-133 479.6 414 62.6
TAR371G1054 Trochodendron aralioides HOM05D006541 ORTHO05D008471 2.5e-133 479.6 384 65.6
Carub.0005s1374 Capsella rubella HOM05D006541 ORTHO05D008471 3.3e-133 479.2 412 61.9
Aqoxy3G03367 Aquilegia oxysepala HOM05D006541 ORTHO05D008471 4.3e-133 478.8 416 62.7
BcaB01g00902 Brassica carinata HOM05D006541 ORTHO05D008471 9.5e-133 477.6 409 64.1
CANSAT25G3319 Cannabis sativa HOM05D006541 ORTHO05D008471 4.7e-132 475.3 432 59.5
BcaC01g01798 Brassica carinata HOM05D006541 ORTHO05D008471 1.4e-131 473.8 414 62.3
C03p71820 Brassica napus HOM05D006541 ORTHO05D008471 1.4e-131 473.8 414 62.3
MSTRG.11386 Avicennia marina HOM05D006541 ORTHO05D008471 5.2e-131 471.9 379 65.2
Sp5g14300 Schrenkiella parvula HOM05D006541 ORTHO05D008471 5.2e-131 471.9 414 62.6
PSO063G0566 Papaver somniferum HOM05D006541 ORTHO05D008471 6.8e-131 471.5 412 59.7
Lsat_1_v5_gn_1_13281 Lactuca sativa HOM05D006541 ORTHO05D008471 1.2e-130 470.7 378 66.1
MBI05_g08285_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 2.0e-130 469.9 423 59.6
Ah.11g048540 Amaranthus hybridus HOM05D006541 ORTHO05D008471 1.7e-129 466.8 410 61.5
Sc12g0006320 Simmondsia chinensis HOM05D006541 ORTHO05D008471 2.2e-129 466.5 412 62.1
HanXRQChr02g0041061 Helianthus annuus HOM05D006541 ORTHO05D008471 2.9e-129 466.1 393 64.9
Actinidia37633 Actinidia chinensis HOM05D006541 ORTHO05D008471 7.0e-128 461.5 391 63.9
Haze_07335 Corylus avellana HOM05D006541 ORTHO05D008471 1.2e-127 460.7 384 67.2
Sopen03g035110 Solanum pennellii HOM05D006541 ORTHO05D008471 4.6e-127 458.8 402 63.4
Solyc03g116140.3 Solanum lycopersicum HOM05D006541 ORTHO05D008471 6.6e-126 454.9 403 63.0
ECA247G0129 Erigeron canadensis HOM05D006541 ORTHO05D008471 8.6e-126 454.5 378 64.0
SGA_v2.0_scaffold25G10913 Striga asiatica HOM05D006541 ORTHO05D008471 4.3e-125 452.2 384 62.2
CSS0004518 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 1.6e-124 450.3 418 59.6
CDE06G2127 Ceratophyllum demersum HOM05D006541 ORTHO05D008471 2.1e-124 449.9 425 58.1
PGSC0003DMG400019513 Solanum tuberosum HOM05D006541 ORTHO05D008471 2.1e-124 449.9 402 61.7
Migut.I00173 Erythranthe guttata HOM05D006541 ORTHO05D008471 6.8e-123 444.9 375 61.9
CSS0042048 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 1.2e-122 444.1 397 62.5
Sabra12G0049100 Salix brachista HOM05D006541 ORTHO05D008471 2.6e-122 443.0 471 54.6
BcaB05g23063 Brassica carinata HOM05D006541 ORTHO05D008471 2.9e-121 439.5 409 59.9
Potri.012G068900 Populus trichocarpa HOM05D006541 ORTHO05D008471 2.9e-121 439.5 388 62.1
EL10Ac5g10987 Beta vulgaris HOM05D006541 ORTHO05D008471 5.4e-120 435.3 376 61.2
HPP92_016797 Vanilla planifolia HOM05D006541 ORTHO05D008471 1.2e-119 434.1 413 58.6
ClCG04G012330 Citrullus lanatus HOM05D006541 ORTHO05D008471 1.6e-119 433.7 375 64.3
HPP92_016827 Vanilla planifolia HOM05D006541 ORTHO05D008471 6.0e-119 431.8 413 58.4
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 1.1e-117 427.6 362 64.4
CsaV3_1G005390 Cucumis sativus L. HOM05D006541 ORTHO05D008471 1.1e-117 427.6 392 62.2
unitig_0.g2528 Utricularia gibba HOM05D006541 ORTHO05D008471 4.7e-116 422.2 373 59.2
Sed0004898 Sechium edule HOM05D006541 ORTHO05D008471 1.1e-115 421.0 341 66.6
Cpa.g.c35819 Carica papaya HOM05D006541 ORTHO05D008471 1.8e-115 420.2 365 63.0
COL.COLO4_24520 Corchorus olitorius HOM05D000087 ORTHO05D008471 5.2e-115 418.7 387 60.2
Manes.06G093400 Manihot esculenta HOM05D006541 ORTHO05D008471 1.5e-114 417.2 358 65.1
ATR0598G034 Amborella trichopoda HOM05D006541 ORTHO05D008471 1.4e-112 410.6 379 58.8
Hma1.2p1_0104F.1_g049980 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 1.1e-107 394.4 334 66.5
vmacro17549 Vaccinium macrocarpon HOM05D006541 ORTHO05D008471 2.0e-106 390.2 405 55.3
Aa31LG4G16360 Aethionema arabicum HOM05D006541 ORTHO05D008471 7.1e-104 381.7 451 50.1
Actinidia04898 Actinidia chinensis HOM05D006541 ORTHO05D008471 1.6e-87 327.4 248 69.0
Zm00001eb312480 Zea mays HOM05D006541 ORTHO05D008471 3.7e-84 316.2 296 57.4
Pp3c16_180 Physcomitrium patens HOM05D006541 ORTHO05D003603 2.5e-80 303.5 393 46.1
Pp3c16_188 Physcomitrium patens HOM05D006541 ORTHO05D003603 2.5e-80 303.5 393 46.1
SEGI_30902 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 1.1e-77 294.7 335 49.3
Mapoly0060s0059 Marchantia polymorpha HOM05D006541 ORTHO05D003603 3.3e-77 293.1 429 42.7
AagrBONN_evm.TU.Sc2ySwM_228.4960 Anthoceros agrestis HOM05D006541 ORTHO05D008471 1.3e-76 291.2 408 43.6
Potri.003G168100 Populus trichocarpa HOM05D006541 ORTHO05D008471 1.8e-67 260.8 157 82.8
CBR_g8828 Chara braunii HOM05D003341 ORTHO05D003603 1.7e-41 174.5 401 32.9
Cpa.g.sc111.3 Carica papaya HOM05D006541 ORTHO05D008471 3.6e-39 166.8 123 65.9
Actinidia04899 Actinidia chinensis HOM05D006541 ORTHO05D008471 3.5e-34 150.2 120 63.3
Os09g0413100 Oryza sativa ssp. japonica HOM05D006541 ORTHO05D008471 1.3e-33 148.3 180 43.9
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 2.6e-29 134.0 308 33.1
Sed0007979 Sechium edule HOM05D006541 ORTHO05D008471 2.3e-25 120.9 87 64.4
Cre09.g412350 Chlamydomonas reinhardtii HOM05D003341 ORTHO05D003603 3.5e-18 97.1 187 35.8
PRCOL_00002459 Prasinoderma coloniale HOM05D006541 ORTHO05D008471 3.0e-17 94.0 151 41.1
CsaV3_1G005410 Cucumis sativus L. HOM05D006541 ORTHO05D008471 5.2e-14 83.2 56 69.6
MELO3C035773.2 Cucumis melo HOM05D006541 ORTHO05D008471 8.9e-14 82.4 50 74.0
vmacro17551 Vaccinium macrocarpon HOM05D006541 ORTHO05D000277 8.9e-14 82.4 50 72.0
Haze_07334 Corylus avellana HOM05D006541 ORTHO05D008471 7.5e-13 79.3 52 71.2
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 4.3e-08 63.5 158 38.6
SEGI_20393 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 5.6e-08 63.2 45 62.2
Cfa027053 Carpinus fangiana HOM05D006541 ORTHO05D124901 7.3e-08 62.8 317 23.7
FAN14G0637 Fragaria x ananassa HOM05D006541 ORTHO05D008471 1.8e-06 58.2 95 43.2
Sed0011433 Sechium edule HOM05D000001 ORTHO05D372967 5.2e-06 56.6 38 73.7


User provided reference genes

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