Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1582 Punica granatum HOM05D006599 ORTHO05D008304 2.3e-153 545.4 260 100.0
Thecc.04G093300 Theobroma cacao HOM05D006599 ORTHO05D008304 2.7e-117 425.6 250 77.6
QL02p067958 Quercus lobata HOM05D006599 ORTHO05D008304 1.0e-116 423.7 249 78.3
COL.COLO4_21402 Corchorus olitorius HOM05D006599 ORTHO05D008304 1.5e-115 419.9 250 77.2
Duzib147G0316 Durio zibethinus HOM05D006599 ORTHO05D008304 6.2e-114 414.5 250 76.0
TAR629G1530 Trochodendron aralioides HOM05D006599 ORTHO05D008304 8.1e-114 414.1 248 74.6
Gohir.A11G072300 Gossypium hirsutum HOM05D006599 ORTHO05D008304 2.0e-112 409.5 250 75.6
CSS0025230 Camellia sinensis var. sinensis HOM05D006599 ORTHO05D008304 2.6e-112 409.1 250 74.0
Gohir.D11G076400 Gossypium hirsutum HOM05D006599 ORTHO05D008304 3.4e-112 408.7 250 75.6
Gorai.007G082000 Gossypium raimondii HOM05D006599 ORTHO05D008304 3.4e-112 408.7 250 75.6
TWI34G0408 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 3.4e-112 408.7 250 74.4
FvH4_6g47020 Fragaria vesca HOM05D006599 ORTHO05D008304 2.9e-111 405.6 250 72.8
FAN14G4927 Fragaria x ananassa HOM05D006599 ORTHO05D008304 2.9e-111 405.6 250 72.8
Manes.02G054000 Manihot esculenta HOM05D006599 ORTHO05D008304 3.8e-111 405.2 250 74.8
Cfa007654 Carpinus fangiana HOM05D006599 ORTHO05D008304 4.9e-111 404.8 250 73.6
FAN02G1129 Fragaria x ananassa HOM05D006599 ORTHO05D008304 3.2e-110 402.1 250 72.4
TWI32G0394 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 4.1e-110 401.7 250 74.0
Atru.chr8.423 Acer truncatum HOM05D006599 ORTHO05D008304 7.1e-110 401.0 250 74.0
FAN09G1977 Fragaria x ananassa HOM05D006599 ORTHO05D008304 1.6e-109 399.8 250 71.6
Nn3g17418 Nelumbo nucifera HOM05D006599 ORTHO05D008304 1.6e-109 399.8 250 71.6
RcHm_v2.0_Chr2g0166081 Rosa chinensis HOM05D006599 ORTHO05D008304 3.5e-109 398.7 250 73.2
GSVIVG01032932001 Vitis vinifera HOM05D006599 ORTHO05D008304 1.3e-108 396.7 250 73.2
Nn4g23391 Nelumbo nucifera HOM05D006599 ORTHO05D008304 2.3e-108 396.0 250 71.2
Hma1.2p1_0481F.1_g162060 Hydrangea macrophylla HOM05D006599 ORTHO05D008304 3.0e-108 395.6 251 71.7
Prupe.3G256500 Prunus persica HOM05D006599 ORTHO05D008304 5.1e-108 394.8 250 72.4
Eucgr.J01379 Eucalyptus grandis HOM05D006599 ORTHO05D008304 2.5e-107 392.5 252 73.0
Potri.004G119500 Populus trichocarpa HOM05D006599 ORTHO05D008304 5.6e-107 391.3 250 71.2
Lsat_1_v5_gn_3_98261 Lactuca sativa HOM05D006599 ORTHO05D008304 2.8e-106 389.0 248 67.3
Cc07_g04100 Coffea canephora HOM05D006599 ORTHO05D008304 8.1e-106 387.5 251 71.3
Sabra04G0069000 Salix brachista HOM05D006599 ORTHO05D008304 1.4e-105 386.7 250 70.8
Gohir.D09G009200 Gossypium hirsutum HOM05D006599 ORTHO05D008304 1.2e-104 383.6 250 70.0
Gorai.006G010900 Gossypium raimondii HOM05D006599 ORTHO05D008304 1.2e-104 383.6 250 70.0
Gohir.A09G010100 Gossypium hirsutum HOM05D006599 ORTHO05D008304 2.0e-104 382.9 250 70.4
Nitab4.5_0000565g0260 Nicotiana tabacum HOM05D006599 ORTHO05D008304 2.0e-104 382.9 251 69.3
Potri.017G092800 Populus trichocarpa HOM05D006599 ORTHO05D008304 2.6e-104 382.5 250 69.6
ClCG07G007400 Citrullus lanatus HOM05D006599 ORTHO05D008304 3.4e-104 382.1 250 70.4
Nitab4.5_0010051g0050 Nicotiana tabacum HOM05D006599 ORTHO05D008304 3.4e-104 382.1 251 68.9
Ca_04338_v3 Cicer arietinum L. HOM05D006599 ORTHO05D008304 5.8e-104 381.3 252 69.8
Peaxi162Scf00166g00058 Petunia axillaris HOM05D006599 ORTHO05D008304 5.8e-104 381.3 251 68.1
HanXRQChr17g0546571 Helianthus annuus HOM05D006599 ORTHO05D008304 9.9e-104 380.6 249 68.3
arahy.Tifrunner.gnm1.ann1.CT2P3Y Arachis hypogaea HOM05D006599 ORTHO05D008304 2.2e-103 379.4 252 70.2
Sc14g0006220 Simmondsia chinensis HOM05D006599 ORTHO05D008304 2.2e-103 379.4 250 70.4
DCAR_025424 Daucus carota HOM05D006599 ORTHO05D008304 2.9e-103 379.0 250 69.6
MD09G1064500 Malus domestica HOM05D006599 ORTHO05D008304 2.9e-103 379.0 250 70.8
arahy.Tifrunner.gnm1.ann1.24WTBT Arachis hypogaea HOM05D006599 ORTHO05D008304 3.8e-103 378.6 252 69.8
Sabra17G0081900 Salix brachista HOM05D006599 ORTHO05D008304 6.4e-103 377.9 250 69.6
CAN.G206.218 Capsicum annuum HOM05D006599 ORTHO05D008304 8.4e-103 377.5 251 67.7
Medtr7g013160 Medicago truncatula HOM05D006599 ORTHO05D008304 3.2e-102 375.6 252 68.3
Sed0027615 Sechium edule HOM05D006599 ORTHO05D008304 4.2e-102 375.2 250 68.8
Lalb_Chr17g0337021 Lupinus albus HOM05D006599 ORTHO05D008304 5.4e-102 374.8 252 69.8
CANSAT64G1926 Cannabis sativa HOM05D006599 ORTHO05D008304 7.1e-102 374.4 254 66.9
MSTRG.23889 Avicennia marina HOM05D006599 ORTHO05D008304 9.3e-102 374.0 249 66.3
Psat3g201440 Pisum sativum HOM05D006599 ORTHO05D008304 1.2e-101 373.6 252 67.9
Solyc02g088730.2 Solanum lycopersicum HOM05D006599 ORTHO05D008304 1.2e-101 373.6 251 66.9
PGSC0003DMG400001449 Solanum tuberosum HOM05D006599 ORTHO05D008304 1.2e-101 373.6 251 66.5
Sopen02g033440 Solanum pennellii HOM05D006599 ORTHO05D008304 1.6e-101 373.2 251 66.9
Glyma.18G265500 Glycine max HOM05D006599 ORTHO05D008304 2.1e-101 372.9 252 69.8
MELO3C013909.2 Cucumis melo HOM05D006599 ORTHO05D008304 4.6e-101 371.7 250 67.6
Oeu047780.1 Olea europaea HOM05D006599 ORTHO05D008304 4.6e-101 371.7 250 68.4
Lj1g0001712 Lotus japonicus HOM05D006599 ORTHO05D008304 6.0e-101 371.3 252 68.3
CiPaw.03G089500 Carya illinoinensis HOM05D006599 ORTHO05D008304 1.3e-100 370.2 250 69.6
Rhsim08G0074600 Rhododendron simsii HOM05D006599 ORTHO05D008304 1.7e-100 369.8 250 68.8
Phvul.008G034600 Phaseolus vulgaris HOM05D006599 ORTHO05D008304 2.3e-100 369.4 252 67.9
Migut.H00636 Erythranthe guttata HOM05D006599 ORTHO05D008304 8.7e-100 367.5 250 66.8
VMungo1383G0637 Vigna mungo HOM05D006599 ORTHO05D008304 8.7e-100 367.5 252 67.5
Ciclev10012597m.g Citrus clementina HOM05D006599 ORTHO05D008304 1.5e-99 366.7 250 70.0
Thecc.04G093200 Theobroma cacao HOM05D006599 ORTHO05D008304 7.3e-99 364.4 250 68.8
CsaV3_3G002390 Cucumis sativus L. HOM05D006599 ORTHO05D008304 3.6e-98 362.1 250 66.0
TPR.G33427 Trifolium pratense HOM05D006599 ORTHO05D008304 6.2e-98 361.3 252 67.1
Oeu035439.1 Olea europaea HOM05D006599 ORTHO05D008304 8.1e-98 360.9 250 66.4
HanXRQChr17g0551751 Helianthus annuus HOM05D006599 ORTHO05D008304 1.8e-97 359.8 249 63.5
Manes.01G097300 Manihot esculenta HOM05D006599 ORTHO05D008304 1.5e-96 356.7 228 72.4
ECA232G1145 Erigeron canadensis HOM05D006599 ORTHO05D008304 3.4e-96 355.5 249 63.1
Aqoxy3G00501 Aquilegia oxysepala HOM05D006599 ORTHO05D008304 4.5e-96 355.1 250 64.4
PSO017G0459 Papaver somniferum HOM05D006599 ORTHO05D008304 3.8e-95 352.1 250 66.0
PSO478G2235 Papaver somniferum HOM05D006599 ORTHO05D008304 1.4e-94 350.1 251 64.9
THA.LOC104823890 Tarenaya hassleriana HOM05D006599 ORTHO05D008304 2.4e-94 349.4 253 65.2
Thhalv10027896m.g Eutrema salsugineum HOM05D006599 ORTHO05D008304 7.9e-93 344.4 252 63.5
Glyma.08G243300 Glycine max HOM05D006599 ORTHO05D008304 1.3e-92 343.6 262 63.4
Aa31LG9G16680 Aethionema arabicum HOM05D006599 ORTHO05D008304 8.7e-92 340.9 252 63.1
AUR62029230 Chenopodium quinoa HOM05D006599 ORTHO05D008304 2.5e-91 339.3 245 65.7
AT5G39250 Arabidopsis thaliana HOM05D006599 ORTHO05D008304 3.3e-91 339.0 253 63.6
A04p11970 Brassica napus HOM05D006599 ORTHO05D008304 9.6e-91 337.4 252 61.9
C04p45620 Brassica napus HOM05D006599 ORTHO05D008304 9.6e-91 337.4 252 61.9
BolC4t26144H Brassica oleracea HOM05D006599 ORTHO05D008304 9.6e-91 337.4 252 61.9
BraA04t16862Z Brassica rapa HOM05D006599 ORTHO05D008304 9.6e-91 337.4 252 61.9
AUR62022778 Chenopodium quinoa HOM05D006599 ORTHO05D008304 2.8e-90 335.9 245 64.1
BcaC02g09687 Brassica carinata HOM05D006599 ORTHO05D008304 3.7e-90 335.5 252 61.5
ATR0064G081 Amborella trichopoda HOM05D006599 ORTHO05D008304 8.1e-90 334.3 249 61.4
AL7G51210 Arabidopsis lyrata HOM05D006599 ORTHO05D008304 1.4e-89 333.6 252 63.1
CARHR263160 Cardamine hirsuta HOM05D006599 ORTHO05D008304 2.4e-89 332.8 252 62.3
BcaB06g27283 Brassica carinata HOM05D006599 ORTHO05D008304 3.1e-89 332.4 252 61.5
Carub.0007s3667 Capsella rubella HOM05D006599 ORTHO05D008304 5.3e-89 331.6 252 62.7
Sp7g02740 Schrenkiella parvula HOM05D006599 ORTHO05D008304 3.4e-88 328.9 252 61.1
SGA_v2.0_scaffold52G19170 Striga asiatica HOM05D006599 ORTHO05D008304 1.1e-86 323.9 251 60.6
CDE10G0620 Ceratophyllum demersum HOM05D006599 ORTHO05D008304 1.9e-86 323.2 240 60.0
Haze_14439 Corylus avellana HOM05D006599 ORTHO05D008304 1.3e-84 317.0 202 71.8
unitig_744.g23984 Utricularia gibba HOM05D006599 ORTHO05D008304 5.1e-84 315.1 250 56.8
Peaxi162Scf00451g00012 Petunia axillaris HOM05D006599 ORTHO05D008304 3.4e-80 302.4 239 58.2
Os03g0423000 Oryza sativa ssp. japonica HOM05D006599 ORTHO05D008304 1.0e-79 300.8 247 58.3
Zm00001eb020180 Zea mays HOM05D006599 ORTHO05D008304 2.2e-79 299.7 247 56.3
HPP92_009527 Vanilla planifolia HOM05D006599 ORTHO05D008304 3.9e-76 288.9 246 56.1
HPP92_009554 Vanilla planifolia HOM05D006599 ORTHO05D008304 5.1e-76 288.5 249 55.4
SHI25645 Sapria himalayana HOM05D006599 ORTHO05D008304 4.8e-74 282.0 249 56.2
Pp3c13_10960 Physcomitrium patens HOM05D006599 ORTHO05D008304 1.2e-69 267.3 250 50.4
FAN05G2816 Fragaria x ananassa HOM05D006599 ORTHO05D008304 5.9e-64 248.4 154 72.1
Mapoly0038s0100 Marchantia polymorpha HOM05D006599 ORTHO05D008304 4.2e-62 242.3 250 46.0
SMO347G0158 Selaginella moellendorffii HOM05D006599 ORTHO05D008304 6.7e-60 235.0 267 43.8
Dinv34953 Davidia involucrata HOM05D006599 ORTHO05D008304 4.2e-54 215.7 139 70.5
Lsat_1_v5_gn_7_2780 Lactuca sativa HOM05D006599 ORTHO05D008304 1.8e-52 210.3 270 44.8
Lj4E117T1 Lonicera japonica HOM05D006599 ORTHO05D008304 2.9e-47 193.0 110 78.2
Peaxi162Scf00451g00005 Petunia axillaris HOM05D006599 ORTHO05D008304 3.8e-47 192.6 285 41.4
Dinv33823 Davidia involucrata HOM05D006599 ORTHO05D008304 2.2e-39 166.8 98 78.6
Lalb_Chr10g0093051 Lupinus albus HOM05D006599 ORTHO05D008304 8.6e-31 138.3 91 67.0
EL10Ac9g22551 Beta vulgaris HOM05D006599 ORTHO05D008304 3.1e-25 119.8 76 67.1
PGSC0003DMG400031200 Solanum tuberosum HOM05D006599 ORTHO05D008304 2.8e-21 106.7 90 54.4
Lalb_Chr10g0093041 Lupinus albus HOM05D006599 ORTHO05D008304 2.0e-19 100.5 54 79.6
MD17G1057800 Malus domestica HOM05D006599 ORTHO05D008304 1.8e-17 94.0 52 76.9
Peaxi162Scf00270g00422 Petunia axillaris HOM05D006599 ORTHO05D008304 1.6e-16 90.9 153 38.6
TPR.G10380 Trifolium pratense HOM05D006599 ORTHO05D008304 1.5e-11 74.3 45 71.1
FAN07G2804 Fragaria x ananassa HOM05D007529 ORTHO05D007451 2.1e-08 63.9 111 35.1
Eucgr.K01581 Eucalyptus grandis HOM05D007529 ORTHO05D007451 2.7e-08 63.5 118 35.6
FvH4_4g15570 Fragaria vesca HOM05D007529 ORTHO05D007451 4.6e-08 62.8 111 35.1
FAN17G0712 Fragaria x ananassa HOM05D007529 ORTHO05D007451 7.8e-08 62.0 111 33.3
Manes.09G016732 Manihot esculenta HOM05D007529 ORTHO05D007451 3.0e-07 60.1 109 35.8
Manes.09G016600 Manihot esculenta HOM05D007529 ORTHO05D007451 5.0e-07 59.3 109 35.8
MD14G1081300 Malus domestica HOM05D007529 ORTHO05D007451 1.1e-06 58.2 97 40.2


User provided reference genes

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