Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 1.3e-193 679.5 333 100.0
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 3.1e-126 455.7 336 66.1
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 4.2e-123 445.3 312 69.9
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 2.1e-122 443.0 310 69.0
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 4.6e-122 441.8 314 69.4
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 4.8e-119 431.8 312 67.6
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 8.2e-119 431.0 311 66.6
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 8.2e-119 431.0 314 66.2
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 4.1e-118 428.7 311 66.2
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 6.9e-118 427.9 315 66.0
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 9.0e-118 427.6 310 66.8
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 9.0e-118 427.6 315 66.3
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 1.2e-117 427.2 312 67.3
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 1.5e-117 426.8 312 67.6
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 2.0e-117 426.4 312 66.0
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 4.5e-117 425.2 312 67.3
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 6.5e-116 421.4 315 65.1
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 1.1e-115 420.6 313 64.5
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 1.4e-115 420.2 319 65.2
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 3.2e-115 419.1 311 66.9
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 9.4e-115 417.5 308 67.2
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 9.4e-115 417.5 308 66.9
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 1.6e-114 416.8 314 65.3
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 7.9e-114 414.5 313 65.2
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 1.8e-113 413.3 315 65.1
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 1.8e-113 413.3 308 65.9
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 2.3e-113 412.9 308 63.3
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 2.3e-113 412.9 308 65.6
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 3.0e-113 412.5 307 63.5
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 3.9e-113 412.1 312 64.7
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 3.9e-113 412.1 362 57.5
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 5.1e-113 411.8 311 63.7
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 1.1e-112 410.6 314 64.3
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 1.1e-112 410.6 307 63.2
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 1.1e-112 410.6 333 62.5
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 2.0e-112 409.8 316 63.9
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 2.5e-112 409.5 315 64.1
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 4.3e-112 408.7 333 61.9
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 4.3e-112 408.7 311 65.3
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 7.4e-112 407.9 314 63.1
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 2.8e-111 406.0 308 63.0
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 2.8e-111 406.0 308 64.6
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 4.8e-111 405.2 316 63.3
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 4.8e-111 405.2 315 63.5
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 6.3e-111 404.8 313 62.9
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 1.1e-110 404.1 317 62.1
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.8e-110 403.3 312 63.5
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.8e-110 403.3 303 64.7
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 3.1e-110 402.5 322 60.6
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 5.9e-109 398.3 312 62.8
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 5.9e-109 398.3 310 63.2
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 5.9e-109 398.3 314 62.7
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 8.5e-108 394.4 280 65.7
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 4.2e-107 392.1 310 62.6
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 7.2e-107 391.3 315 61.6
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 4.7e-106 388.7 316 60.8
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 7.9e-106 387.9 308 62.3
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 1.4e-105 387.1 308 62.3
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 1.5e-104 383.6 280 66.1
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 2.0e-104 383.3 314 60.5
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 3.3e-104 382.5 311 63.0
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 9.7e-104 380.9 294 61.6
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 9.7e-104 380.9 315 60.6
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 9.7e-104 380.9 307 60.6
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 1.3e-103 380.6 306 60.5
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 1.7e-103 380.2 280 63.9
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 6.3e-103 378.3 311 59.8
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 6.3e-103 378.3 311 59.8
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 6.3e-103 378.3 281 60.1
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 5.3e-102 375.2 311 59.5
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 7.0e-102 374.8 313 58.8
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 9.1e-102 374.4 328 57.0
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 1.5e-101 373.6 275 64.7
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 4.5e-101 372.1 282 62.1
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 5.9e-101 371.7 333 56.5
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 2.9e-100 369.4 313 59.7
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 6.5e-100 368.2 295 62.4
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 8.5e-100 367.9 267 67.4
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 1.1e-99 367.5 321 56.7
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 1.1e-99 367.5 308 60.1
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 1.5e-96 357.1 326 56.4
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 3.3e-96 355.9 324 54.3
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 4.4e-96 355.5 276 64.9
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 1.4e-94 350.5 284 58.8
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 2.4e-94 349.7 307 58.0
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 5.3e-94 348.6 307 57.0
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 7.0e-94 348.2 307 56.7
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 9.1e-94 347.8 307 58.0
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 9.1e-94 347.8 311 55.3
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 1.2e-93 347.4 307 56.7
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 1.2e-93 347.4 307 58.0
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 1.2e-93 347.4 307 58.0
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 2.6e-93 346.3 307 57.0
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 3.5e-93 345.9 307 57.7
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 4.5e-93 345.5 307 57.3
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 5.9e-93 345.1 307 57.3
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 5.9e-93 345.1 307 57.7
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 5.9e-93 345.1 307 56.4
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 1.3e-92 344.0 307 57.3
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 1.3e-92 344.0 307 57.0
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 8.5e-92 341.3 241 70.5
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 1.5e-91 340.5 242 70.7
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 1.9e-91 340.1 313 55.3
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 4.2e-91 339.0 307 55.4
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 9.4e-91 337.8 308 55.2
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.6e-90 337.0 311 55.9
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 1.2e-88 330.9 279 59.1
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 1.5e-88 330.5 284 58.1
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 5.7e-88 328.6 311 54.7
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 2.2e-87 326.6 267 61.8
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 2.2e-87 326.6 241 68.0
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 3.7e-87 325.9 247 66.4
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 2.4e-86 323.2 311 57.2
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 1.6e-82 310.5 247 60.3
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 2.7e-82 309.7 293 52.6
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 2.7e-77 293.1 311 53.1
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 3.5e-77 292.7 263 56.3
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 1.4e-70 270.8 317 46.7
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 3.2e-70 269.6 276 48.2
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 4.1e-70 269.2 291 48.5
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 4.3e-67 259.2 317 42.9
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 3.5e-61 239.6 202 58.9
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 6.6e-52 208.8 192 53.1
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 3.6e-50 203.0 195 56.9
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.0e-44 184.9 172 54.7
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 1.5e-43 181.0 171 53.8
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 1.9e-38 164.1 300 37.0
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.5e-35 154.5 109 64.2
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 1.5e-35 154.5 113 65.5
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 9.9e-24 115.2 114 49.1
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 2.7e-13 80.5 68 60.3


User provided reference genes

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