Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 3.1e-200 702.2 539 100.0
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 1.0e-126 458.0 548 69.5
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 9.5e-125 451.4 545 64.4
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 3.4e-122 443.0 548 66.2
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 5.7e-122 442.2 548 62.0
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.7e-121 440.7 552 63.6
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 4.1e-120 436.0 548 63.1
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 1.1e-117 427.9 557 63.2
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 6.8e-115 418.7 556 63.1
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 8.9e-115 418.3 546 61.7
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 2.6e-114 416.8 550 63.6
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 3.4e-114 416.4 544 64.3
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 4.4e-114 416.0 546 60.3
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 5.8e-114 415.6 546 60.4
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 5.8e-114 415.6 550 64.7
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 4.9e-113 412.5 546 62.3
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 6.4e-113 412.1 560 62.0
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 5.4e-112 409.1 553 64.0
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 3.5e-111 406.4 546 61.5
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 4.6e-111 406.0 520 67.5
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 1.0e-110 404.8 547 60.0
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 1.7e-110 404.1 564 64.9
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.7e-110 404.1 552 65.0
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 2.3e-110 403.7 553 58.4
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 3.0e-110 403.3 548 62.0
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 3.9e-110 402.9 562 64.9
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 8.6e-110 401.7 552 64.9
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 3.3e-109 399.8 553 63.8
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 4.3e-109 399.4 569 61.5
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 9.5e-109 398.3 545 60.4
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 1.2e-108 397.9 552 59.6
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 1.2e-108 397.9 541 60.6
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 1.2e-108 397.9 547 59.4
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 2.8e-108 396.7 547 62.9
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 4.7e-108 396.0 564 58.5
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 6.2e-108 395.6 591 60.7
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 6.8e-107 392.1 549 67.2
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.5e-106 391.0 570 57.4
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 2.0e-106 390.6 555 63.2
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.3e-105 387.9 553 60.2
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 4.9e-105 386.0 549 59.0
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 4.9e-105 386.0 553 61.5
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 4.9e-105 386.0 548 62.0
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.2e-104 383.3 546 62.1
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 5.4e-104 382.5 551 58.3
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 7.1e-104 382.1 571 61.3
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 1.2e-103 381.3 558 59.7
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 1.2e-103 381.3 572 58.0
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 2.1e-103 380.6 543 58.9
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 2.1e-103 380.6 543 63.4
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 2.1e-103 380.6 548 62.2
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 4.6e-103 379.4 552 60.9
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 4.6e-103 379.4 554 56.7
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 6.0e-103 379.0 554 56.1
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 3.0e-102 376.7 550 61.1
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 8.6e-102 375.2 550 59.8
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 1.1e-101 374.8 548 53.3
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 1.5e-101 374.4 555 60.0
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 2.5e-101 373.6 557 65.2
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 2.5e-101 373.6 560 59.8
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.2e-100 371.3 546 59.5
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 1.2e-100 371.3 551 66.1
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 2.1e-100 370.5 546 59.7
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 3.6e-100 369.8 550 60.7
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 4.7e-100 369.4 552 61.8
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 6.2e-100 369.0 562 65.8
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 1.8e-99 367.5 589 49.1
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 6.8e-99 365.5 552 62.5
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 6.8e-99 365.5 551 61.3
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 2.6e-98 363.6 544 59.4
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 5.8e-98 362.5 557 58.7
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 5.8e-98 362.5 568 57.2
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 9.9e-98 361.7 549 60.3
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.7e-97 360.9 543 62.8
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.9e-96 357.5 550 64.9
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 2.4e-96 357.1 544 61.4
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 4.3e-93 346.3 545 61.1
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 5.6e-93 345.9 543 58.6
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 1.2e-92 344.7 561 59.2
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.2e-92 344.7 545 57.1
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 3.6e-92 343.2 550 60.4
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.1e-91 341.7 549 63.4
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 1.1e-91 341.7 555 59.6
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 7.6e-90 335.5 568 57.4
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 3.2e-88 330.1 550 64.7
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.1e-85 321.6 576 51.2
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 1.5e-85 321.2 484 59.9
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 5.6e-85 319.3 553 58.0
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 9.6e-85 318.5 542 56.6
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 1.1e-83 315.1 545 59.1
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.2e-82 311.6 551 57.5
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 4.4e-82 309.7 571 55.5
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 5.8e-82 309.3 564 52.5
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 7.6e-82 308.9 597 53.4
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 3.2e-80 303.5 541 62.7
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 1.6e-79 301.2 566 52.3
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 3.0e-78 297.0 561 56.0
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 1.3e-76 291.6 570 50.2
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 2.0e-74 284.3 466 56.2
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.7e-73 281.2 377 63.1
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 2.2e-73 280.8 568 53.0
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 4.9e-73 279.6 569 52.0
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 8.4e-73 278.9 211 76.8
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 4.2e-72 276.6 562 49.3
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 5.4e-72 276.2 579 52.7
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 1.6e-71 274.6 605 48.6
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 4.6e-71 273.1 387 52.2
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 6.0e-71 272.7 565 49.9
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 7.9e-71 272.3 181 80.7
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 1.3e-70 271.6 569 50.3
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 5.1e-70 269.6 161 87.6
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 5.1e-70 269.6 186 81.7
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 6.7e-70 269.2 461 58.4
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 8.7e-70 268.9 557 50.8
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 5.6e-69 266.2 583 49.7
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 5.6e-69 266.2 549 50.5
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 2.4e-67 260.8 591 51.8
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 3.4e-66 256.9 154 87.0
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 3.8e-57 226.9 186 67.7
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 6.7e-54 216.1 159 74.8
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 4.3e-53 213.4 495 47.3
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.9e-48 198.0 497 50.5
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 4.2e-48 196.8 318 53.1
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 3.6e-47 193.7 539 39.3
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 6.7e-38 162.9 122 75.4
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 4.1e-35 153.7 449 46.1
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 7.0e-35 152.9 284 54.2
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 2.8e-28 131.0 271 54.6
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 1.7e-25 121.7 101 71.3
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 8.5e-25 119.4 74 82.4
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 8.5e-25 119.4 80 68.8
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 7.2e-24 116.3 518 40.3
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.1e-23 114.8 105 61.9
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 2.1e-23 114.8 104 69.2
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 6.1e-23 113.2 99 68.7
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.5e-21 108.6 99 68.7
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.8e-20 104.4 64 85.9
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 3.7e-20 104.0 164 42.7
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 4.1e-19 100.5 99 64.6
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 4.5e-18 97.1 103 60.2
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 4.0e-14 84.0 58 84.5
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 4.0e-14 84.0 96 59.4
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 1.5e-13 82.0 86 58.1
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 2.0e-13 81.6 74 64.9
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 2.0e-13 81.6 74 64.9
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 9.8e-13 79.3 46 89.1
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 9.5e-08 62.8 156 31.4
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.1e-07 61.6 115 45.2
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 2.8e-07 61.2 75 54.7


User provided reference genes

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