Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1346 Punica granatum HOM05D007187 ORTHO05D009219 1.6e-189 666.0 352 100.0
Eucgr.H00587 Eucalyptus grandis HOM05D007187 ORTHO05D009219 3.1e-124 449.1 339 72.9
Cfa020663 Carpinus fangiana HOM05D007187 ORTHO05D009219 1.4e-121 440.3 353 71.7
RcHm_v2.0_Chr7g0177701 Rosa chinensis HOM05D007187 ORTHO05D009219 7.8e-120 434.5 349 69.9
GSVIVG01000394001 Vitis vinifera HOM05D007187 ORTHO05D009219 1.3e-119 433.7 335 70.4
Ciclev10020853m.g Citrus clementina HOM05D007187 ORTHO05D009219 3.0e-119 432.6 352 69.0
MD06G1234700 Malus domestica HOM05D007187 ORTHO05D009219 4.3e-118 428.7 352 67.6
QL10p033296 Quercus lobata HOM05D007187 ORTHO05D009219 1.5e-115 420.2 351 68.9
QL93p0156_0017 Quercus lobata HOM05D007187 ORTHO05D009219 1.5e-115 420.2 351 68.9
FAN13G0144 Fragaria x ananassa HOM05D007187 ORTHO05D009219 9.9e-115 417.5 373 64.3
Atru.chr9.1590 Acer truncatum HOM05D007187 ORTHO05D009219 2.2e-114 416.4 351 66.1
TAR629G1287 Trochodendron aralioides HOM05D007187 ORTHO05D009219 4.9e-114 415.2 346 67.9
Hma1.2p1_0471F.1_g159290 Hydrangea macrophylla HOM05D007187 ORTHO05D009219 8.4e-114 414.5 291 72.2
Manes.14G173900 Manihot esculenta HOM05D007187 ORTHO05D009219 9.3e-113 411.0 353 67.1
Thecc.03G067300 Theobroma cacao HOM05D007187 ORTHO05D009219 9.3e-113 411.0 302 70.9
Nn4g24583 Nelumbo nucifera HOM05D007187 ORTHO05D009219 6.0e-112 408.3 346 66.5
ClCG04G010390 Citrullus lanatus HOM05D007187 ORTHO05D009219 1.3e-111 407.1 350 64.0
Gorai.001G069400 Gossypium raimondii HOM05D007187 ORTHO05D009219 2.3e-111 406.4 342 65.8
Gohir.D07G065800 Gossypium hirsutum HOM05D007187 ORTHO05D009219 3.9e-111 405.6 341 66.0
Gohir.A07G061100 Gossypium hirsutum HOM05D007187 ORTHO05D009219 6.6e-111 404.8 342 65.2
Prupe.5G239500 Prunus persica HOM05D007187 ORTHO05D009219 1.5e-110 403.7 351 65.0
MELO3C002156.2 Cucumis melo HOM05D007187 ORTHO05D009219 4.3e-110 402.1 349 63.6
Sabra15G0027300 Salix brachista HOM05D007187 ORTHO05D009219 2.1e-109 399.8 354 63.6
Aa31LG4G3710 Aethionema arabicum HOM05D007187 ORTHO05D009219 2.4e-108 396.4 302 68.9
Peaxi162Scf00171g00732 Petunia axillaris HOM05D007187 ORTHO05D009219 2.4e-108 396.4 307 68.7
Actinidia34651 Actinidia chinensis HOM05D007187 ORTHO05D009219 1.2e-107 394.0 346 64.2
AT1G73470 Arabidopsis thaliana HOM05D007187 ORTHO05D009219 4.4e-107 392.1 293 70.0
Sed0020940 Sechium edule HOM05D007187 ORTHO05D009219 5.8e-107 391.7 347 64.0
CAN.G637.26 Capsicum annuum HOM05D007187 ORTHO05D009219 1.7e-106 390.2 318 67.3
CsaV3_1G007400 Cucumis sativus L. HOM05D007187 ORTHO05D009219 1.7e-106 390.2 347 62.2
Thhalv10018766m.g Eutrema salsugineum HOM05D007187 ORTHO05D009219 3.8e-106 389.0 302 68.2
Lj5C164T17 Lonicera japonica HOM05D007187 ORTHO05D009219 3.8e-106 389.0 322 64.3
Rhsim08G0113600 Rhododendron simsii HOM05D007187 ORTHO05D009219 6.4e-106 388.3 342 63.7
Aqoxy3G04047 Aquilegia oxysepala HOM05D007187 ORTHO05D009219 1.1e-105 387.5 352 62.2
Carub.0002s2020 Capsella rubella HOM05D007187 ORTHO05D009219 1.4e-105 387.1 302 66.9
AL2G33240 Arabidopsis lyrata HOM05D007187 ORTHO05D009219 2.4e-105 386.3 302 66.6
MSTRG.11527 Avicennia marina HOM05D007187 ORTHO05D009219 2.4e-105 386.3 301 70.1
C02p31110 Brassica napus HOM05D007187 ORTHO05D009219 5.4e-105 385.2 300 68.3
Sp5g28650 Schrenkiella parvula HOM05D007187 ORTHO05D009219 7.1e-105 384.8 302 67.5
A02p18740 Brassica napus HOM05D007187 ORTHO05D009219 1.2e-104 384.0 352 61.6
Solyc03g098110.4 Solanum lycopersicum HOM05D007187 ORTHO05D009219 3.5e-104 382.5 318 65.7
Sopen03g028810 Solanum pennellii HOM05D007187 ORTHO05D009219 4.6e-104 382.1 318 65.4
BolC2t09155H Brassica oleracea HOM05D007187 ORTHO05D009219 1.3e-103 380.6 305 67.5
DCAR_014735 Daucus carota HOM05D007187 ORTHO05D009219 1.7e-103 380.2 298 67.4
arahy.Tifrunner.gnm1.ann1.RE1P9T Arachis hypogaea HOM05D007187 ORTHO05D009219 3.0e-103 379.4 293 68.3
ATR0598G346 Amborella trichopoda HOM05D007187 ORTHO05D009219 3.9e-103 379.0 336 61.9
TWI15G0155 Tripterygium wilfordii HOM05D007187 ORTHO05D009219 6.6e-103 378.3 388 57.5
PSO063G6433 Papaver somniferum HOM05D007187 ORTHO05D009219 4.3e-102 375.6 302 65.6
PSO782G3824 Papaver somniferum HOM05D007187 ORTHO05D009219 5.6e-102 375.2 302 65.2
arahy.Tifrunner.gnm1.ann1.ZBK6XN Arachis hypogaea HOM05D007187 ORTHO05D009219 7.4e-102 374.8 296 68.2
PGSC0003DMG400031050 Solanum tuberosum HOM05D007187 ORTHO05D009219 1.6e-101 373.6 318 64.2
ECA238G2937 Erigeron canadensis HOM05D007187 ORTHO05D009219 2.8e-101 372.9 312 65.1
HanXRQChr01g0002671 Helianthus annuus HOM05D007187 ORTHO05D009219 4.8e-101 372.1 346 61.0
Dinv19316 Davidia involucrata HOM05D007187 ORTHO05D009219 6.2e-101 371.7 295 69.2
Migut.O00232 Erythranthe guttata HOM05D007187 ORTHO05D009219 1.1e-100 370.9 305 65.9
Nitab4.5_0000936g0080 Nicotiana tabacum HOM05D007187 ORTHO05D009219 3.1e-100 369.4 311 64.6
Lsat_1_v5_gn_2_15080 Lactuca sativa HOM05D007187 ORTHO05D009219 4.0e-100 369.0 288 68.4
FvH4_5g17910 Fragaria vesca HOM05D007187 ORTHO05D009219 3.4e-99 365.9 313 66.1
Cc04_g09730 Coffea canephora HOM05D007187 ORTHO05D009219 7.6e-99 364.8 339 60.5
Nitab4.5_0004454g0040 Nicotiana tabacum HOM05D007187 ORTHO05D009219 4.9e-98 362.1 310 63.9
BraA02t06916Z Brassica rapa HOM05D007187 ORTHO05D009219 8.4e-98 361.3 306 65.0
HPP92_026739 Vanilla planifolia HOM05D007187 ORTHO05D009219 1.9e-97 360.1 309 63.4
HPP92_016177 Vanilla planifolia HOM05D007187 ORTHO05D009219 3.2e-97 359.4 309 63.1
LjContig00484g0006565 Lotus japonicus HOM05D007187 ORTHO05D009219 7.1e-97 358.2 297 65.3
CiPaw.15G149500 Carya illinoinensis HOM05D007187 ORTHO05D009219 9.3e-97 357.8 313 67.7
SalBow5G2942 Salvia bowleyana HOM05D007187 ORTHO05D009219 4.6e-96 355.5 353 58.4
VMungo0251G3256 Vigna mungo HOM05D007187 ORTHO05D009219 4.6e-96 355.5 344 59.0
TPR.G1397 Trifolium pratense HOM05D007187 ORTHO05D009219 3.0e-95 352.8 303 62.7
MD14G1241900 Malus domestica HOM05D007187 ORTHO05D009219 9.6e-94 347.8 354 59.0
Phvul.002G332600 Phaseolus vulgaris HOM05D007187 ORTHO05D009219 2.8e-93 346.3 347 57.3
Nitab4.5_0000021g0400 Nicotiana tabacum HOM05D007187 ORTHO05D009219 4.0e-92 342.4 294 63.9
SGA_v2.0_scaffold90G27781 Striga asiatica HOM05D007187 ORTHO05D009219 2.5e-86 323.2 309 60.5
Hma1.2p1_0471F.1_g159280 Hydrangea macrophylla HOM05D007187 ORTHO05D009219 1.8e-84 317.0 233 69.5
Lalb_Chr16g0386871 Lupinus albus HOM05D007187 ORTHO05D009219 9.3e-81 304.7 268 63.4
Glyma.08G057000 Glycine max HOM05D007187 ORTHO05D009219 2.7e-80 303.1 260 62.7
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 5.1e-79 298.9 266 60.5
SEGI_30595 Sequoiadendron giganteum HOM05D007187 ORTHO05D009219 7.7e-75 285.0 290 54.5
Sc10g0008990 Simmondsia chinensis HOM05D007187 ORTHO05D009219 2.7e-72 276.6 263 57.4
AagrBONN_evm.TU.Sc2ySwM_228.159 Anthoceros agrestis HOM05D007187 ORTHO05D009219 4.6e-72 275.8 308 50.6
Potri.015G033200 Populus trichocarpa HOM05D007187 ORTHO05D009219 3.9e-71 272.7 276 56.5
Haze_18954 Corylus avellana HOM05D007187 ORTHO05D009219 8.8e-71 271.6 377 49.1
Pp3c24_15180 Physcomitrium patens HOM05D007187 ORTHO05D009219 2.5e-70 270.0 296 52.4
Hund22370 Selenicereus undatus HOM05D007187 ORTHO05D009219 7.4e-70 268.5 319 50.5
SMO137G0317 Selaginella moellendorffii HOM05D007187 ORTHO05D009219 1.2e-67 261.2 359 46.8
vmacro17853 Vaccinium macrocarpon HOM05D007187 ORTHO05D009219 5.5e-65 252.3 286 52.1
Mapoly0047s0078 Marchantia polymorpha HOM05D007187 ORTHO05D009219 3.9e-63 246.1 296 48.6
CBR_g23710 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-62 244.6 300 48.0
Psat7g000640 Pisum sativum HOM05D007187 ORTHO05D009219 1.7e-61 240.7 210 61.0
EL10Ac8g19490 Beta vulgaris HOM05D007187 ORTHO05D009219 8.2e-61 238.4 338 45.6
Cpa.g.sc7.111 Carica papaya HOM05D007187 ORTHO05D009219 2.1e-56 223.8 190 66.3
FAN18G0372 Fragaria x ananassa HOM05D007187 ORTHO05D009219 1.1e-54 218.0 182 67.0
FAN08G2087 Fragaria x ananassa HOM05D007187 ORTHO05D009219 3.3e-54 216.5 184 66.3
SMO134G0127 Selaginella moellendorffii HOM05D007187 ORTHO05D009219 3.3e-54 216.5 244 52.9
FAN08G0101 Fragaria x ananassa HOM05D007187 ORTHO05D009219 3.4e-46 189.9 237 49.8
CARHR066500 Cardamine hirsuta HOM05D007187 ORTHO05D009219 4.8e-45 186.0 135 68.1
Zm00001eb314540 Zea mays HOM05D007187 ORTHO05D009219 1.8e-44 184.1 272 44.9
Os09g0448900 Oryza sativa ssp. japonica HOM05D007187 ORTHO05D009219 4.4e-38 162.9 137 63.5
MSTRG.10865 Avicennia marina HOM05D007187 ORTHO05D009219 7.3e-33 145.6 104 76.0
CDE11G1050 Ceratophyllum demersum HOM05D007187 ORTHO05D009219 1.2e-30 138.3 98 70.4
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 1.7e-29 134.4 289 37.0
MSTRG.10866 Avicennia marina HOM05D007187 ORTHO05D009219 1.6e-27 127.9 103 67.0
Aqoxy3G04295 Aquilegia oxysepala HOM05D007187 ORTHO05D009219 7.5e-22 109.0 95 65.3
Cre09.g407450 Chlamydomonas reinhardtii HOM05D007187 ORTHO05D009219 2.7e-19 100.5 412 25.7
Aqoxy3G04293 Aquilegia oxysepala HOM05D007187 ORTHO05D009219 3.9e-18 96.7 88 62.5
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 1.6e-16 91.3 122 46.7
Cpa.g.sc7.112 Carica papaya HOM05D007187 ORTHO05D009219 2.8e-16 90.5 89 55.1
RcHm_v2.0_Chr6g0283931 Rosa chinensis HOM05D007187 ORTHO05D009219 1.1e-09 68.6 67 59.7
PRCOL_00002241 Prasinoderma coloniale HOM05D007187 ORTHO05D009219 5.6e-09 66.2 289 28.4


User provided reference genes

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