Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 7.8e-115 417.2 213 100.0
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 6.0e-91 337.8 221 75.6
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 6.7e-90 334.3 219 74.9
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 9.6e-89 330.5 218 75.2
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 1.6e-88 329.7 216 76.4
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.8e-88 328.9 217 75.1
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 3.7e-88 328.6 217 74.7
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 3.7e-88 328.6 217 75.1
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 4.8e-88 328.2 225 72.4
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 1.8e-87 326.2 219 75.3
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 1.8e-87 326.2 217 74.2
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 4.0e-87 325.1 223 73.1
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 9.0e-87 323.9 225 72.9
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 1.5e-86 323.2 213 75.1
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.0e-86 322.8 217 73.7
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 2.6e-86 322.4 217 73.7
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 2.6e-86 322.4 219 72.6
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 2.6e-86 322.4 220 73.2
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 3.4e-86 322.0 218 73.4
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 4.5e-86 321.6 218 75.2
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 5.8e-86 321.2 227 71.8
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 7.6e-86 320.9 219 71.7
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 7.6e-86 320.9 219 71.7
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 7.6e-86 320.9 223 71.7
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 1.0e-85 320.5 215 74.0
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 1.0e-85 320.5 220 72.3
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 3.8e-85 318.5 219 72.6
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 3.8e-85 318.5 213 71.8
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 4.9e-85 318.2 220 71.8
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 8.4e-85 317.4 216 74.5
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 8.4e-85 317.4 223 71.7
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 8.4e-85 317.4 218 73.9
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 8.4e-85 317.4 216 74.5
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 1.1e-84 317.0 223 73.1
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 1.1e-84 317.0 217 71.9
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 1.1e-84 317.0 216 72.2
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 1.1e-84 317.0 217 73.7
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 1.4e-84 316.6 226 71.2
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 1.9e-84 316.2 219 71.7
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 1.9e-84 316.2 220 72.7
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 1.9e-84 316.2 219 71.7
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 1.9e-84 316.2 216 73.6
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 3.2e-84 315.5 248 66.1
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 4.2e-84 315.1 220 70.9
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 4.2e-84 315.1 214 72.9
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 4.2e-84 315.1 218 71.1
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 9.3e-84 313.9 219 70.3
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 1.2e-83 313.5 220 71.4
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 1.6e-83 313.2 219 74.9
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 1.6e-83 313.2 216 72.7
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 2.1e-83 312.8 210 73.3
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 2.7e-83 312.4 219 72.1
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 3.5e-83 312.0 220 70.5
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 1.0e-82 310.5 221 71.0
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 1.3e-82 310.1 220 71.4
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 1.3e-82 310.1 220 70.9
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 1.3e-82 310.1 218 73.4
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 1.8e-82 309.7 217 71.4
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 2.3e-82 309.3 219 70.8
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 3.0e-82 308.9 220 70.9
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 3.0e-82 308.9 226 69.0
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 3.9e-82 308.5 222 68.5
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 3.9e-82 308.5 220 71.4
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 6.7e-82 307.8 220 70.9
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 6.7e-82 307.8 219 70.8
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 6.7e-82 307.8 219 70.8
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 6.7e-82 307.8 220 70.9
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 6.7e-82 307.8 222 68.0
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 8.7e-82 307.4 227 68.3
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 8.7e-82 307.4 222 68.0
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 1.1e-81 307.0 226 68.6
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 3.3e-81 305.4 206 74.8
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 3.3e-81 305.4 218 71.1
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 3.3e-81 305.4 235 67.7
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 4.3e-81 305.1 216 70.8
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 5.7e-81 304.7 226 68.1
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 5.7e-81 304.7 225 68.9
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 7.4e-81 304.3 217 70.5
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 7.4e-81 304.3 215 69.8
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 9.6e-81 303.9 220 69.1
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 1.6e-80 303.1 211 72.5
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 2.1e-80 302.8 216 72.2
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 2.8e-80 302.4 216 69.0
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 2.8e-80 302.4 219 67.1
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 3.7e-80 302.0 231 67.1
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 6.2e-80 301.2 215 70.2
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 6.2e-80 301.2 229 66.4
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 1.4e-79 300.1 216 70.8
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 3.1e-79 298.9 218 68.3
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 3.1e-79 298.9 216 69.4
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 5.3e-79 298.1 215 70.2
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 9.0e-79 297.4 219 67.6
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 5.0e-77 291.6 263 60.1
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 5.0e-77 291.6 259 60.6
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 6.5e-77 291.2 220 67.3
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 2.5e-76 289.3 227 65.6
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 2.5e-76 289.3 220 66.4
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 3.2e-76 288.9 219 67.1
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 4.2e-76 288.5 222 66.7
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 4.2e-76 288.5 245 62.4
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 3.5e-75 285.4 217 64.5
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 6.1e-75 284.6 207 70.5
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.5e-73 280.0 178 75.3
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 2.5e-73 279.3 162 80.2
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 9.7e-73 277.3 220 64.1
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 1.3e-72 276.9 252 57.5
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 2.4e-71 272.7 159 79.9
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 2.4e-71 272.7 208 68.8
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 4.1e-71 271.9 214 64.0
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 2.2e-69 266.2 222 62.2
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 6.5e-69 264.6 207 67.6
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 1.4e-68 263.5 203 64.0
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 7.9e-67 257.7 182 70.3
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 1.3e-61 240.4 195 63.6
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 8.5e-61 237.7 216 57.9
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 7.2e-60 234.6 132 82.6
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 3.3e-57 225.7 217 53.5
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 4.4e-57 225.3 238 53.8
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 1.1e-55 220.7 123 82.9
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 4.7e-51 205.3 245 49.4
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 1.0e-50 204.1 201 53.2
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 3.0e-50 202.6 221 54.3
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 4.0e-50 202.2 116 79.3
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 2.8e-48 196.1 244 45.9
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.8e-39 166.8 171 52.0
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 5.4e-39 165.2 100 77.0
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 1.2e-35 154.1 251 37.5
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 1.7e-32 143.7 178 46.1
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 4.4e-25 119.0 248 35.9
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 2.5e-12 76.6 43 79.1
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.4e-10 70.9 43 76.7
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 2.6e-09 66.6 200 31.0
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 5.8e-09 65.5 38 76.3
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 7.5e-09 65.1 38 76.3
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 4.9e-08 62.4 83 49.4
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 3.2e-07 59.7 67 50.7
QL10p020720 Quercus lobata HOM05D005618 ORTHO05D337099 4.1e-07 59.3 37 83.8
QL10p031514 Quercus lobata HOM05D005618 ORTHO05D337805 9.2e-07 58.2 38 81.6
Cpa.g.sc246.8 Carica papaya HOM05D005618 ORTHO05D118306 2.1e-06 57.0 45 66.7
Medtr5g009930 Medicago truncatula HOM05D001916 ORTHO05D003272 2.7e-06 56.6 162 25.3


User provided reference genes

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